PDB Short entry for 1UMW HEADER TRANSFERASE 29-AUG-03 1UMW TITLE STRUCTURE OF A HUMAN PLK1 POLO-BOX DOMAIN/PHOSPHOPEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: POLO-BOX DOMAIN, RESIDUES 367-603; COMPND 5 SYNONYM: PLK1, SERINE THREONINE PROTEIN KINASE 13, STKP13; COMPND 6 EC: 2.7.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P1-LIC; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS KINASE, PHOSPHOPEPTIDE-BINDING DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RELLOS,A.ELIA,M.B.YAFFE,S.J.SMERDON REVDAT 3 08-FEB-17 1UMW 1 HEADER TITLE SOURCE REMARK REVDAT 3 2 VERSN FORMUL REVDAT 2 24-FEB-09 1UMW 1 VERSN REVDAT 1 16-OCT-03 1UMW 0 JRNL AUTH A.ELIA,P.RELLOS,L.HAIRE,J.CHAO,F.IVINS,K.HOEPKER, JRNL AUTH 2 D.MOHAMMAD,L.CANTLEY,S.J.SMERDON,M.B.YAFFE JRNL TITL THE MOLECULAR BASIS FOR PHOSPHODEPENDENT SUBSTRATE JRNL TITL 2 TARGETING AND REGULATION OF PLKS BY THE POLO-BOX JRNL TITL 3 DOMAIN JRNL REF CELL(CAMBRIDGE,MASS.) V. 115 83 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 14532005 JRNL DOI 10.1016/S0092-8674(03)00725-6 REMARK 2 REMARK 2 RESOLUTION. 1.9 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 44210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2352 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3278 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.660 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3759 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5069 ; 1.176 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 3.310 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 701 ;17.837 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2781 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1778 ; 0.262 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 387 ; 0.181 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.216 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.265 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2273 ; 0.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3650 ; 1.211 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.543 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1419 ; 2.561 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 52 REMARK 3 RESIDUE RANGE : A 155 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0060 10.6415 10.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0870 REMARK 3 T33: 0.0697 T12: -0.0173 REMARK 3 T13: 0.0135 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0924 L22: 0.7790 REMARK 3 L33: 0.5890 L12: -0.0743 REMARK 3 L13: 0.0913 L23: 0.3080 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.0129 S13: -0.0054 REMARK 3 S21: 0.0356 S22: -0.0427 S23: 0.0298 REMARK 3 S31: -0.0268 S32: 0.0321 S33: 0.0401 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2894 -2.2549 -9.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.0761 REMARK 3 T33: 0.0819 T12: 0.0112 REMARK 3 T13: -0.0087 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.2902 L22: 0.4473 REMARK 3 L33: 0.6825 L12: -0.1226 REMARK 3 L13: -0.2699 L23: 0.4066 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: 0.0411 S13: -0.0368 REMARK 3 S21: -0.0572 S22: -0.0749 S23: 0.0592 REMARK 3 S31: -0.0106 S32: -0.0714 S33: 0.0684 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2075 15.7888 -11.6201 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1406 REMARK 3 T33: 0.1883 T12: -0.0809 REMARK 3 T13: -0.0010 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 2.6482 L22: -2.8633 REMARK 3 L33: 23.2865 L12: -3.4026 REMARK 3 L13: -7.7728 L23: -6.9806 REMARK 3 S TENSOR REMARK 3 S11: 0.4419 S12: 0.6344 S13: 0.5081 REMARK 3 S21: -0.8781 S22: -0.3704 S23: -0.5249 REMARK 3 S31: -0.4815 S32: -0.3607 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 52 REMARK 3 RESIDUE RANGE : B 155 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2965 -3.5070 -31.8055 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0601 REMARK 3 T33: 0.0768 T12: 0.0139 REMARK 3 T13: -0.0081 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.8533 L22: 0.3556 REMARK 3 L33: 0.9997 L12: 0.1328 REMARK 3 L13: 0.2718 L23: 0.4472 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0427 S13: 0.0474 REMARK 3 S21: 0.0316 S22: 0.0462 S23: -0.0668 REMARK 3 S31: 0.0593 S32: 0.0022 S33: -0.0378 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4493 4.8280 -26.0810 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.1227 REMARK 3 T33: 0.1257 T12: -0.0009 REMARK 3 T13: -0.0186 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 0.9540 L22: 1.2176 REMARK 3 L33: 1.1722 L12: 0.7559 REMARK 3 L13: 0.7405 L23: 0.5507 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: 0.0798 S13: -0.0265 REMARK 3 S21: -0.0030 S22: 0.1229 S23: -0.1348 REMARK 3 S31: -0.0952 S32: 0.2446 S33: -0.0943 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1027 8.1634 -44.6438 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.0903 REMARK 3 T33: 0.0904 T12: 0.0012 REMARK 3 T13: -0.0014 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 44.0812 L22: 42.2758 REMARK 3 L33: 29.6575 L12: 36.3444 REMARK 3 L13: 7.2698 L23: 0.3682 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: 1.2835 S13: 0.6461 REMARK 3 S21: -1.0429 S22: 1.0736 S23: 0.0736 REMARK 3 S31: -1.2980 S32: 1.3473 S33: -0.9788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-SEP-03. REMARK 100 THE PDBE ID CODE IS EBI-13396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.244 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.75900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 MAY BE REQUIRED FOR CELL DIVISION AND MAY HAVE A ROLE REMARK 400 DURING G1 OR S PHASE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 367 REMARK 465 GLU A 368 REMARK 465 VAL A 369 REMARK 465 VAL A 370 REMARK 465 ASP A 371 REMARK 465 CYS A 372 REMARK 465 ALA A 596 REMARK 465 SER A 597 REMARK 465 ASN A 598 REMARK 465 ARG A 599 REMARK 465 LEU A 600 REMARK 465 LYS A 601 REMARK 465 ALA A 602 REMARK 465 SER A 603 REMARK 465 GLY B 367 REMARK 465 GLU B 368 REMARK 465 VAL B 369 REMARK 465 VAL B 370 REMARK 465 ASP B 371 REMARK 465 CYS B 372 REMARK 465 ALA B 596 REMARK 465 SER B 597 REMARK 465 ASN B 598 REMARK 465 ARG B 599 REMARK 465 LEU B 600 REMARK 465 LYS B 601 REMARK 465 ALA B 602 REMARK 465 SER B 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 373 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 594 CG CD NE CZ NH1 NH2 REMARK 470 SER A 595 CA C O CB OG REMARK 470 HIS B 373 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 594 CG CD NE CZ NH1 NH2 REMARK 470 SER B 595 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ASP A 447 - O HOH A 2054 1.77 REMARK 500 OD1 ASP A 447 - O HOH A 2054 1.62 REMARK 500 O ALA A 493 - O HOH A 2089 2.19 REMARK 500 O ASP B 447 - N ASP B 449 1.86 REMARK 500 NH1 ARG B 557 - O HOH B 2068 2.15 REMARK 500 O HOH A 2045 - O HOH A 2122 1.97 REMARK 500 O HOH A 2062 - O HOH A 2128 2.12 REMARK 500 O HOH B 2003 - O HOH B 2045 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 402 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 SER F 4 O - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 PRO F 6 C - N - CA ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 391 40.57 -104.63 REMARK 500 LYS A 420 -34.10 -138.16 REMARK 500 ASN A 430 -2.01 82.39 REMARK 500 ASP A 449 -36.39 -138.05 REMARK 500 ASP A 503 -125.12 63.92 REMARK 500 GLU A 504 -18.37 137.47 REMARK 500 ALA A 506 98.35 -172.79 REMARK 500 ARG A 507 12.60 -165.19 REMARK 500 GLU A 575 -69.36 100.01 REMARK 500 GLU B 391 58.02 -98.56 REMARK 500 ALA B 404 0.11 -67.62 REMARK 500 CYS B 428 -7.79 -49.71 REMARK 500 ASN B 430 -10.51 86.68 REMARK 500 SER B 439 -4.79 76.17 REMARK 500 ASN B 446 16.95 -62.03 REMARK 500 ASP B 449 -65.72 -136.30 REMARK 500 SER B 461 120.72 -175.70 REMARK 500 LEU B 463 -155.77 -124.68 REMARK 500 SER B 467 34.05 -96.57 REMARK 500 HIS B 468 69.05 -0.56 REMARK 500 PRO B 499 -178.33 -57.13 REMARK 500 ARG B 500 -161.18 -112.02 REMARK 500 GLU B 504 -37.11 -23.43 REMARK 500 ALA B 506 76.74 -177.27 REMARK 500 LEU B 508 109.21 169.50 REMARK 500 SER B 593 57.42 -106.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER F 4 21.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 1UMW A 367 603 UNP P53350 PLK_HUMAN 367 603 DBREF 1UMW B 367 603 UNP P53350 PLK_HUMAN 367 603 DBREF 1UMW E 1 7 PDB 1UMW 1UMW 1 7 DBREF 1UMW F 1 7 PDB 1UMW 1UMW 1 7 SEQRES 1 A 237 GLY GLU VAL VAL ASP CYS HIS LEU SER ASP MET LEU GLN SEQRES 2 A 237 GLN LEU HIS SER VAL ASN ALA SER LYS PRO SER GLU ARG SEQRES 3 A 237 GLY LEU VAL ARG GLN GLU GLU ALA GLU ASP PRO ALA CYS SEQRES 4 A 237 ILE PRO ILE PHE TRP VAL SER LYS TRP VAL ASP TYR SER SEQRES 5 A 237 ASP LYS TYR GLY LEU GLY TYR GLN LEU CYS ASP ASN SER SEQRES 6 A 237 VAL GLY VAL LEU PHE ASN ASP SER THR ARG LEU ILE LEU SEQRES 7 A 237 TYR ASN ASP GLY ASP SER LEU GLN TYR ILE GLU ARG ASP SEQRES 8 A 237 GLY THR GLU SER TYR LEU THR VAL SER SER HIS PRO ASN SEQRES 9 A 237 SER LEU MET LYS LYS ILE THR LEU LEU LYS TYR PHE ARG SEQRES 10 A 237 ASN TYR MET SER GLU HIS LEU LEU LYS ALA GLY ALA ASN SEQRES 11 A 237 ILE THR PRO ARG GLU GLY ASP GLU LEU ALA ARG LEU PRO SEQRES 12 A 237 TYR LEU ARG THR TRP PHE ARG THR ARG SER ALA ILE ILE SEQRES 13 A 237 LEU HIS LEU SER ASN GLY SER VAL GLN ILE ASN PHE PHE SEQRES 14 A 237 GLN ASP HIS THR LYS LEU ILE LEU CYS PRO LEU MET ALA SEQRES 15 A 237 ALA VAL THR TYR ILE ASP GLU LYS ARG ASP PHE ARG THR SEQRES 16 A 237 TYR ARG LEU SER LEU LEU GLU GLU TYR GLY CYS CYS LYS SEQRES 17 A 237 GLU LEU ALA SER ARG LEU ARG TYR ALA ARG THR MET VAL SEQRES 18 A 237 ASP LYS LEU LEU SER SER ARG SER ALA SER ASN ARG LEU SEQRES 19 A 237 LYS ALA SER SEQRES 1 B 237 GLY GLU VAL VAL ASP CYS HIS LEU SER ASP MET LEU GLN SEQRES 2 B 237 GLN LEU HIS SER VAL ASN ALA SER LYS PRO SER GLU ARG SEQRES 3 B 237 GLY LEU VAL ARG GLN GLU GLU ALA GLU ASP PRO ALA CYS SEQRES 4 B 237 ILE PRO ILE PHE TRP VAL SER LYS TRP VAL ASP TYR SER SEQRES 5 B 237 ASP LYS TYR GLY LEU GLY TYR GLN LEU CYS ASP ASN SER SEQRES 6 B 237 VAL GLY VAL LEU PHE ASN ASP SER THR ARG LEU ILE LEU SEQRES 7 B 237 TYR ASN ASP GLY ASP SER LEU GLN TYR ILE GLU ARG ASP SEQRES 8 B 237 GLY THR GLU SER TYR LEU THR VAL SER SER HIS PRO ASN SEQRES 9 B 237 SER LEU MET LYS LYS ILE THR LEU LEU LYS TYR PHE ARG SEQRES 10 B 237 ASN TYR MET SER GLU HIS LEU LEU LYS ALA GLY ALA ASN SEQRES 11 B 237 ILE THR PRO ARG GLU GLY ASP GLU LEU ALA ARG LEU PRO SEQRES 12 B 237 TYR LEU ARG THR TRP PHE ARG THR ARG SER ALA ILE ILE SEQRES 13 B 237 LEU HIS LEU SER ASN GLY SER VAL GLN ILE ASN PHE PHE SEQRES 14 B 237 GLN ASP HIS THR LYS LEU ILE LEU CYS PRO LEU MET ALA SEQRES 15 B 237 ALA VAL THR TYR ILE ASP GLU LYS ARG ASP PHE ARG THR SEQRES 16 B 237 TYR ARG LEU SER LEU LEU GLU GLU TYR GLY CYS CYS LYS SEQRES 17 B 237 GLU LEU ALA SER ARG LEU ARG TYR ALA ARG THR MET VAL SEQRES 18 B 237 ASP LYS LEU LEU SER SER ARG SER ALA SER ASN ARG LEU SEQRES 19 B 237 LYS ALA SER SEQRES 1 E 7 PRO MET GLN SER TPO PRO LEU SEQRES 1 F 7 PRO MET GLN SER TPO PRO LEU MODRES 1UMW TPO E 5 THR PHOSPHOTHREONINE MODRES 1UMW TPO F 5 THR PHOSPHOTHREONINE HET TPO E 5 11 HET TPO F 5 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 HOH *275(H2 O) HELIX 1 1 HIS A 373 SER A 387 1 15 HELIX 2 2 ARG A 396 ALA A 400 5 5 HELIX 3 3 ASP A 402 ILE A 406 5 5 HELIX 4 4 PRO A 469 SER A 471 5 3 HELIX 5 5 LEU A 472 LEU A 490 1 19 HELIX 6 6 LEU A 564 GLY A 571 1 8 HELIX 7 7 GLU A 575 SER A 593 1 19 HELIX 8 8 HIS B 373 SER B 387 1 15 HELIX 9 9 ARG B 396 ALA B 400 5 5 HELIX 10 10 ASP B 402 ILE B 406 5 5 HELIX 11 11 LEU B 472 LEU B 490 1 19 HELIX 12 12 LEU B 564 GLY B 571 1 8 HELIX 13 13 CYS B 573 SER B 593 1 21 SHEET 1 AA 6 VAL A 411 ASP A 416 0 SHEET 2 AA 6 GLY A 422 LEU A 427 -1 O GLY A 424 N VAL A 415 SHEET 3 AA 6 VAL A 432 PHE A 436 -1 O GLY A 433 N TYR A 425 SHEET 4 AA 6 ARG A 441 LEU A 444 -1 O LEU A 442 N VAL A 434 SHEET 5 AA 6 SER A 450 ILE A 454 -1 O GLN A 452 N ILE A 443 SHEET 6 AA 6 GLU A 460 THR A 464 -1 O SER A 461 N TYR A 453 SHEET 1 AB 6 LEU A 511 ARG A 516 0 SHEET 2 AB 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 AB 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 AB 6 LYS A 540 CYS A 544 -1 O LEU A 541 N ILE A 532 SHEET 5 AB 6 ALA A 549 ILE A 553 -1 O ALA A 549 N CYS A 544 SHEET 6 AB 6 PHE A 559 ARG A 563 -1 O ARG A 560 N TYR A 552 SHEET 1 BA 6 VAL B 411 ASP B 416 0 SHEET 2 BA 6 GLY B 422 LEU B 427 -1 O GLY B 424 N VAL B 415 SHEET 3 BA 6 VAL B 432 PHE B 436 -1 O GLY B 433 N TYR B 425 SHEET 4 BA 6 ARG B 441 LEU B 444 -1 O LEU B 442 N VAL B 434 SHEET 5 BA 6 SER B 450 ILE B 454 -1 O GLN B 452 N ILE B 443 SHEET 6 BA 6 TYR B 462 THR B 464 -1 O LEU B 463 N LEU B 451 SHEET 1 BB 6 LEU B 511 ARG B 516 0 SHEET 2 BB 6 ALA B 520 LEU B 525 -1 O ILE B 522 N PHE B 515 SHEET 3 BB 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 BB 6 LYS B 540 CYS B 544 -1 O LEU B 541 N ILE B 532 SHEET 5 BB 6 ALA B 549 ILE B 553 -1 O ALA B 549 N CYS B 544 SHEET 6 BB 6 PHE B 559 ARG B 563 -1 O ARG B 560 N TYR B 552 LINK C SER E 4 N TPO E 5 1555 1555 1.33 LINK C TPO E 5 N PRO E 6 1555 1555 1.33 LINK C SER F 4 N TPO F 5 1555 1555 1.33 LINK C TPO F 5 N PRO F 6 1555 1555 1.33 CRYST1 62.352 79.518 61.993 90.00 93.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016038 0.000000 0.000913 0.00000 SCALE2 0.000000 0.012576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016157 0.00000