PDB Short entry for 1UMZ HEADER TRANSFERASE 03-SEP-03 1UMZ TITLE XYLOGLUCAN ENDOTRANSGLYCOSYLASE IN COMPLEX WITH THE XYLOGLUCAN TITLE 2 NONASACCHARIDE XLLG. COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOGLUCAN ENDOTRANSGLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.207; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TREMULA; SOURCE 3 ORGANISM_COMMON: EUROPEAN ASPEN; SOURCE 4 ORGANISM_TAXID: 113636; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PPIC9 KEYWDS GLYCOSIDE HYDROLASE, XET, XTH, XEH, TRANSGLYCOSYLATION, XYLOGLUCAN, KEYWDS 2 TRANSFERASE, GLYCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.JOHANSSON,H.BRUMER,A.M.KALLAS,H.HENRIKSSON,S.E.DENMAN,T.T.TEERI, AUTHOR 2 T.A.JONES REVDAT 5 13-DEC-23 1UMZ 1 REMARK HETSYN REVDAT 4 29-JUL-20 1UMZ 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 1UMZ 1 VERSN REVDAT 2 17-MAR-05 1UMZ 1 AUTHOR JRNL REVDAT 1 18-MAR-04 1UMZ 0 JRNL AUTH P.JOHANSSON,H.BRUMER,M.J.BAUMANN,A.M.KALLAS,H.HENRIKSSON, JRNL AUTH 2 S.E.DENMAN,T.T.TEERI,T.A.JONES JRNL TITL CRYSTAL STRUCTURES OF A POPLAR XYLOGLUCAN JRNL TITL 2 ENDOTRANSGLYCOSYLASE REVEAL DETAILS OF TRANSGLYCOSYLATION JRNL TITL 3 ACCEPTOR BINDING JRNL REF PLANT CELL V. 16 874 2004 JRNL REFN ISSN 1040-4651 JRNL PMID 15020748 JRNL DOI 10.1105/TPC.020065 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 79649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 202 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4769 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3955 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6489 ; 1.562 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9145 ; 4.163 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 6.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5163 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1092 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 831 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4437 ; 0.288 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2290 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 248 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.269 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2639 ; 1.038 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4246 ; 1.935 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2130 ; 2.478 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 3.918 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1UMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1290013424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE (220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.610 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1UN1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG ML-1 PROTEIN SOLUTION 1:1 WITH REMARK 280 1.0 M NAOAC AND 0.2 M IMIDAZOLE PH 6.5, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.94800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.94800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 UNK A -6 REMARK 465 GLU A -5 REMARK 465 THR A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 UNK B -6 REMARK 465 GLU B -5 REMARK 465 THR B -4 REMARK 465 ALA B -3 REMARK 465 ALA B -2 REMARK 465 PHE B -1 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 VAL B 7 REMARK 465 ASP B 8 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 214 CD CE NZ REMARK 480 LYS A 227 CG CD CE NZ REMARK 480 LYS A 246 CG CD CE NZ REMARK 480 LYS A 267 CG CD CE NZ REMARK 480 LYS B 125 CG CD CE NZ REMARK 480 GLU B 212 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 80 N GLU B 82 1.88 REMARK 500 O PRO A 260 O HOH A 2103 1.98 REMARK 500 O HOH A 2098 O HOH B 2005 2.08 REMARK 500 NE2 GLN B 79 O HOH B 2033 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 94 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 233 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 271 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 53 152.37 75.97 REMARK 500 ASP A 144 -120.31 52.39 REMARK 500 TRP A 179 -14.36 -153.73 REMARK 500 SER A 201 -61.96 84.78 REMARK 500 PHE B 53 152.00 77.81 REMARK 500 ASP B 144 -120.69 47.50 REMARK 500 TRP B 179 -17.14 -147.98 REMARK 500 SER B 201 -61.66 80.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BGC D 1 REMARK 610 BGC F 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UN1 RELATED DB: PDB REMARK 900 XYLOGLUCAN ENDOTRANSGLYCOSYLASE NATIVE STRUCTURE DBREF 1UMZ A -6 -1 PDB 1UMZ 1UMZ -6 -1 DBREF 1UMZ A 1 272 UNP Q8GZD5 Q8GZD5 23 294 DBREF 1UMZ B -6 -1 PDB 1UMZ 1UMZ -6 -1 DBREF 1UMZ B 1 272 UNP Q8GZD5 Q8GZD5 23 294 SEQRES 1 A 278 UNK GLU THR ALA ALA PHE ALA ALA LEU ARG LYS PRO VAL SEQRES 2 A 278 ASP VAL ALA PHE GLY ARG ASN TYR VAL PRO THR TRP ALA SEQRES 3 A 278 PHE ASP HIS ILE LYS TYR PHE ASN GLY GLY ASN GLU ILE SEQRES 4 A 278 GLN LEU HIS LEU ASP LYS TYR THR GLY THR GLY PHE GLN SEQRES 5 A 278 SER LYS GLY SER TYR LEU PHE GLY HIS PHE SER MET GLN SEQRES 6 A 278 MET LYS LEU VAL PRO GLY ASP SER ALA GLY THR VAL THR SEQRES 7 A 278 ALA PHE TYR LEU SER SER GLN ASN SER GLU HIS ASP GLU SEQRES 8 A 278 ILE ASP PHE GLU PHE LEU GLY ASN ARG THR GLY GLN PRO SEQRES 9 A 278 TYR ILE LEU GLN THR ASN VAL PHE THR GLY GLY LYS GLY SEQRES 10 A 278 ASP ARG GLU GLN ARG ILE TYR LEU TRP PHE ASP PRO THR SEQRES 11 A 278 LYS GLU PHE HIS TYR TYR SER VAL LEU TRP ASN MET TYR SEQRES 12 A 278 MET ILE VAL PHE LEU VAL ASP ASP VAL PRO ILE ARG VAL SEQRES 13 A 278 PHE LYS ASN CYS LYS ASP LEU GLY VAL LYS PHE PRO PHE SEQRES 14 A 278 ASN GLN PRO MET LYS ILE TYR SER SER LEU TRP ASN ALA SEQRES 15 A 278 ASP ASP TRP ALA THR ARG GLY GLY LEU GLU LYS THR ASP SEQRES 16 A 278 TRP SER LYS ALA PRO PHE ILE ALA SER TYR ARG SER PHE SEQRES 17 A 278 HIS ILE ASP GLY CYS GLU ALA SER VAL GLU ALA LYS PHE SEQRES 18 A 278 CYS ALA THR GLN GLY ALA ARG TRP TRP ASP GLN LYS GLU SEQRES 19 A 278 PHE GLN ASP LEU ASP ALA PHE GLN TYR ARG ARG LEU SER SEQRES 20 A 278 TRP VAL ARG GLN LYS TYR THR ILE TYR ASN TYR CYS THR SEQRES 21 A 278 ASP ARG SER ARG TYR PRO SER MET PRO PRO GLU CYS LYS SEQRES 22 A 278 ARG ASP ARG ASP ILE SEQRES 1 B 278 UNK GLU THR ALA ALA PHE ALA ALA LEU ARG LYS PRO VAL SEQRES 2 B 278 ASP VAL ALA PHE GLY ARG ASN TYR VAL PRO THR TRP ALA SEQRES 3 B 278 PHE ASP HIS ILE LYS TYR PHE ASN GLY GLY ASN GLU ILE SEQRES 4 B 278 GLN LEU HIS LEU ASP LYS TYR THR GLY THR GLY PHE GLN SEQRES 5 B 278 SER LYS GLY SER TYR LEU PHE GLY HIS PHE SER MET GLN SEQRES 6 B 278 MET LYS LEU VAL PRO GLY ASP SER ALA GLY THR VAL THR SEQRES 7 B 278 ALA PHE TYR LEU SER SER GLN ASN SER GLU HIS ASP GLU SEQRES 8 B 278 ILE ASP PHE GLU PHE LEU GLY ASN ARG THR GLY GLN PRO SEQRES 9 B 278 TYR ILE LEU GLN THR ASN VAL PHE THR GLY GLY LYS GLY SEQRES 10 B 278 ASP ARG GLU GLN ARG ILE TYR LEU TRP PHE ASP PRO THR SEQRES 11 B 278 LYS GLU PHE HIS TYR TYR SER VAL LEU TRP ASN MET TYR SEQRES 12 B 278 MET ILE VAL PHE LEU VAL ASP ASP VAL PRO ILE ARG VAL SEQRES 13 B 278 PHE LYS ASN CYS LYS ASP LEU GLY VAL LYS PHE PRO PHE SEQRES 14 B 278 ASN GLN PRO MET LYS ILE TYR SER SER LEU TRP ASN ALA SEQRES 15 B 278 ASP ASP TRP ALA THR ARG GLY GLY LEU GLU LYS THR ASP SEQRES 16 B 278 TRP SER LYS ALA PRO PHE ILE ALA SER TYR ARG SER PHE SEQRES 17 B 278 HIS ILE ASP GLY CYS GLU ALA SER VAL GLU ALA LYS PHE SEQRES 18 B 278 CYS ALA THR GLN GLY ALA ARG TRP TRP ASP GLN LYS GLU SEQRES 19 B 278 PHE GLN ASP LEU ASP ALA PHE GLN TYR ARG ARG LEU SER SEQRES 20 B 278 TRP VAL ARG GLN LYS TYR THR ILE TYR ASN TYR CYS THR SEQRES 21 B 278 ASP ARG SER ARG TYR PRO SER MET PRO PRO GLU CYS LYS SEQRES 22 B 278 ARG ASP ARG ASP ILE MODRES 1UMZ ASN A 93 ASN GLYCOSYLATION SITE MODRES 1UMZ ASN B 93 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET BGC D 1 11 HET BGC D 2 11 HET BGC D 3 11 HET XYS D 4 9 HET XYS D 5 9 HET GAL D 6 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET BGC F 1 11 HET BGC F 2 11 HET BGC F 3 11 HET XYS F 4 9 HET XYS F 5 9 HET GAL F 6 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 4 BGC 6(C6 H12 O6) FORMUL 4 XYS 4(C5 H10 O5) FORMUL 4 GAL 2(C6 H12 O6) FORMUL 7 HOH *245(H2 O) HELIX 1 1 ALA A 10 ASN A 14 1 5 HELIX 2 2 ALA A 20 ASP A 22 5 3 HELIX 3 3 ASN A 28 GLY A 30 5 3 HELIX 4 4 CYS A 154 GLY A 158 5 5 HELIX 5 5 THR A 181 LEU A 185 5 5 HELIX 6 6 ASP A 189 ALA A 193 5 5 HELIX 7 7 ARG A 222 GLN A 226 5 5 HELIX 8 8 GLN A 226 GLN A 230 5 5 HELIX 9 9 ASP A 233 TYR A 247 1 15 HELIX 10 10 CYS A 253 ASP A 255 5 3 HELIX 11 11 PRO A 264 ARG A 270 1 7 HELIX 12 12 ALA B 10 ASN B 14 1 5 HELIX 13 13 ALA B 20 ASP B 22 5 3 HELIX 14 14 CYS B 154 GLY B 158 5 5 HELIX 15 15 THR B 181 LEU B 185 5 5 HELIX 16 16 ASP B 189 ALA B 193 5 5 HELIX 17 17 ARG B 222 GLN B 226 5 5 HELIX 18 18 GLN B 226 GLN B 230 5 5 HELIX 19 19 ASP B 233 TYR B 247 1 15 HELIX 20 20 CYS B 253 ASP B 255 5 3 SHEET 1 AA 8 TYR A 15 TRP A 19 0 SHEET 2 AA 8 THR A 43 SER A 47 -1 O GLY A 44 N THR A 18 SHEET 3 AA 8 LYS A 168 ASN A 175 -1 O ILE A 169 N SER A 47 SHEET 4 AA 8 THR A 70 SER A 77 -1 O VAL A 71 N TRP A 174 SHEET 5 AA 8 GLU A 85 LEU A 91 -1 O ILE A 86 N LEU A 76 SHEET 6 AA 8 ILE A 100 PHE A 106 -1 O ILE A 100 N LEU A 91 SHEET 7 AA 8 GLN A 115 ILE A 117 -1 O GLN A 115 N THR A 103 SHEET 8 AA 8 THR A 248 ASN A 251 -1 N ILE A 249 O ARG A 116 SHEET 1 AB 7 ILE A 24 PHE A 27 0 SHEET 2 AB 7 GLU A 32 LEU A 37 -1 O GLU A 32 N PHE A 27 SHEET 3 AB 7 PHE A 195 GLU A 208 -1 O PHE A 195 N LEU A 37 SHEET 4 AB 7 TYR A 51 LYS A 61 -1 N LEU A 52 O CYS A 207 SHEET 5 AB 7 HIS A 128 TRP A 134 -1 O HIS A 128 N MET A 60 SHEET 6 AB 7 MET A 138 VAL A 143 -1 O VAL A 140 N LEU A 133 SHEET 7 AB 7 VAL A 146 LYS A 152 -1 O VAL A 146 N VAL A 143 SHEET 1 BA 8 TYR B 15 TRP B 19 0 SHEET 2 BA 8 THR B 43 SER B 47 -1 O GLY B 44 N THR B 18 SHEET 3 BA 8 LYS B 168 ASN B 175 -1 O ILE B 169 N SER B 47 SHEET 4 BA 8 THR B 70 SER B 77 -1 O VAL B 71 N TRP B 174 SHEET 5 BA 8 GLU B 85 LEU B 91 -1 O ILE B 86 N LEU B 76 SHEET 6 BA 8 ILE B 100 PHE B 106 -1 O ILE B 100 N LEU B 91 SHEET 7 BA 8 GLN B 115 ILE B 117 -1 O GLN B 115 N THR B 103 SHEET 8 BA 8 THR B 248 ASN B 251 -1 N ILE B 249 O ARG B 116 SHEET 1 BB 7 ILE B 24 PHE B 27 0 SHEET 2 BB 7 GLU B 32 LEU B 37 -1 O GLU B 32 N PHE B 27 SHEET 3 BB 7 PHE B 195 GLU B 208 -1 O PHE B 195 N LEU B 37 SHEET 4 BB 7 TYR B 51 LYS B 61 -1 N LEU B 52 O CYS B 207 SHEET 5 BB 7 HIS B 128 TRP B 134 -1 O HIS B 128 N MET B 60 SHEET 6 BB 7 MET B 138 VAL B 143 -1 O VAL B 140 N LEU B 133 SHEET 7 BB 7 VAL B 146 LYS B 152 -1 O VAL B 146 N VAL B 143 SSBOND 1 CYS A 207 CYS A 216 1555 1555 2.19 SSBOND 2 CYS A 253 CYS A 266 1555 1555 2.06 SSBOND 3 CYS B 207 CYS B 216 1555 1555 2.66 SSBOND 4 CYS B 253 CYS B 266 1555 1555 2.08 LINK ND2 ASN A 93 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 93 C1 NAG E 1 1555 1555 1.43 LINK NE2 GLN B 97 O6 NAG E 1 1555 1555 1.92 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O4 BGC D 1 C1 BGC D 2 1555 1555 1.44 LINK O4 BGC D 2 C1 BGC D 3 1555 1555 1.45 LINK O6 BGC D 2 C1 XYS D 5 1555 1555 1.76 LINK O6 BGC D 3 C1 XYS D 4 1555 1555 1.44 LINK O2 XYS D 5 C1 GAL D 6 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.43 LINK O4 BGC F 1 C1 BGC F 2 1555 1555 1.44 LINK O4 BGC F 2 C1 BGC F 3 1555 1555 1.44 LINK O6 BGC F 2 C1 XYS F 5 1555 1555 1.64 LINK O6 BGC F 3 C1 XYS F 4 1555 1555 1.45 LINK O2 XYS F 5 C1 GAL F 6 1555 1555 1.44 CISPEP 1 ALA A 193 PRO A 194 0 3.01 CISPEP 2 ALA B 193 PRO B 194 0 10.12 CRYST1 188.162 188.162 45.896 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005314 0.003068 0.000000 0.00000 SCALE2 0.000000 0.006137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021788 0.00000 MTRIX1 1 0.844600 0.533500 0.045600 -1.29480 1 MTRIX2 1 -0.528600 0.844300 -0.087500 1.23610 1 MTRIX3 1 -0.085200 0.049800 0.995100 10.36060 1