PDB Short entry for 1UO1 HEADER FOUR HELIX BUNDLE 15-SEP-03 1UO1 TITLE STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES TITLE 2 OF FOUR HELIX BUNDLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GCN4 LEUCINE ZIPPER, AMINO ACID BIOSYNTHESIS COMPND 5 REGULATORY PROTEIN, PLI; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: DIMER ASYMMETRIC UNIT OF FOUR HELIX BUNDLE COMPND 8 MUTATION ILE26THR SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 4932; SOURCE 6 OTHER_DETAILS: BASED ON SEQUENCE FROM SACCHAROMYCES SOURCE 7 CEREVISIAE (BAKER'S YEAST) KEYWDS FOUR HELIX BUNDLE, CAVITY EXPDTA X-RAY DIFFRACTION AUTHOR M.K.YADAV,J.E.REDMAN,J.M.ALVAREZ-GUTIERREZ,Y.ZHANG, AUTHOR 2 C.D.STOUT,M.R.GHADIRI REVDAT 3 24-FEB-09 1UO1 1 VERSN REVDAT 2 20-JUL-05 1UO1 1 AUTHOR JRNL REVDAT 1 13-OCT-04 1UO1 0 JRNL AUTH M.K.YADAV,J.E.REDMAN,L.J.LEMAN, JRNL AUTH 2 J.M.ALVAREZ-GUTIERREZ,Y.ZHANG,C.D.STOUT,M.R.GHADIRI JRNL TITL STRUCTURE-BASED ENGINEERING OF INTERNAL CAVITIES JRNL TITL 2 IN COILED-COIL PEPTIDES JRNL REF BIOCHEMISTRY V. 44 9723 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16008357 JRNL DOI 10.1021/BI050742A REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.83 REMARK 3 NUMBER OF REFLECTIONS : 3118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.23470 REMARK 3 R VALUE (WORKING SET) : 0.23145 REMARK 3 FREE R VALUE : 0.30246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.3 REMARK 3 FREE R VALUE TEST SET COUNT : 141 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.769 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.420 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.354 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UO1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-03. REMARK 100 THE PDBE ID CODE IS EBI-13505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 114.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3283 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.218 REMARK 200 RESOLUTION RANGE LOW (A) : 35.578 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.200 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M NACL, 100 MM NAAC, REMARK 280 200 MM LI2SO4, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.69550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.69550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.69550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.69550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.69550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.69550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 39.69550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 39.69550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 39.69550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 39.69550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 39.69550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 39.69550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 39.69550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 39.69550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 39.69550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 39.69550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 39.69550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 39.69550 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 59.54325 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 19.84775 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 19.84775 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 59.54325 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 59.54325 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.54325 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 19.84775 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 19.84775 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 59.54325 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 19.84775 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 59.54325 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 19.84775 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 59.54325 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 19.84775 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 19.84775 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 19.84775 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 59.54325 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 19.84775 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 59.54325 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 59.54325 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 59.54325 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 19.84775 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 19.84775 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 59.54325 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 59.54325 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 19.84775 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 19.84775 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 19.84775 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 19.84775 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 59.54325 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 19.84775 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 59.54325 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 19.84775 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 59.54325 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 59.54325 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 59.54325 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 138.93425 REMARK 350 BIOMT2 2 0.000000 0.000000 -1.000000 59.54325 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 59.54325 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE LEU 274 THR, CHAINS A AND B REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE A -1 REMARK 465 GLU A 32 REMARK 465 ARG A 33 REMARK 465 ACE B -1 REMARK 465 ARG B 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 32 CA C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 4 CD GLN A 4 OE1 0.151 REMARK 500 GLU A 6 CD GLU A 6 OE2 0.164 REMARK 500 ASP A 7 CB ASP A 7 CG 0.131 REMARK 500 LYS A 8 CD LYS A 8 CE 0.234 REMARK 500 GLU A 10 CD GLU A 10 OE2 0.132 REMARK 500 SER A 14 CB SER A 14 OG -0.112 REMARK 500 TYR A 17 CD2 TYR A 17 CE2 0.108 REMARK 500 TYR A 17 CG TYR A 17 CD2 -0.081 REMARK 500 GLU A 20 CD GLU A 20 OE1 0.126 REMARK 500 GLU A 20 CD GLU A 20 OE2 0.213 REMARK 500 GLU A 22 CD GLU A 22 OE2 -0.079 REMARK 500 ALA A 24 CA ALA A 24 CB 0.127 REMARK 500 ARG A 25 CB ARG A 25 CG -0.180 REMARK 500 LYS A 28 CD LYS A 28 CE 0.263 REMARK 500 LYS A 28 CE LYS A 28 NZ 0.155 REMARK 500 LYS A 28 CG LYS A 28 CD 0.231 REMARK 500 GLU B 6 CD GLU B 6 OE2 0.126 REMARK 500 GLU B 6 CG GLU B 6 CD 0.104 REMARK 500 ASP B 7 C ASP B 7 O 0.120 REMARK 500 LYS B 8 CD LYS B 8 CE 0.191 REMARK 500 LYS B 8 CG LYS B 8 CD 0.216 REMARK 500 GLU B 10 CD GLU B 10 OE1 0.105 REMARK 500 GLU B 11 CD GLU B 11 OE1 0.210 REMARK 500 LEU B 16 C LEU B 16 O -0.163 REMARK 500 TYR B 17 CB TYR B 17 CG -0.118 REMARK 500 TYR B 17 CE1 TYR B 17 CZ -0.140 REMARK 500 TYR B 17 CG TYR B 17 CD2 -0.113 REMARK 500 TYR B 17 CZ TYR B 17 OH 0.111 REMARK 500 GLU B 20 CD GLU B 20 OE1 0.087 REMARK 500 GLU B 20 CD GLU B 20 OE2 -0.079 REMARK 500 GLU B 22 CD GLU B 22 OE1 0.158 REMARK 500 GLU B 22 CD GLU B 22 OE2 -0.086 REMARK 500 LEU B 23 CG LEU B 23 CD2 -0.253 REMARK 500 LEU B 23 C LEU B 23 O 0.122 REMARK 500 ARG B 25 CD ARG B 25 NE 0.110 REMARK 500 ARG B 25 CG ARG B 25 CD 0.181 REMARK 500 ARG B 25 NE ARG B 25 CZ 0.119 REMARK 500 THR B 26 CA THR B 26 CB -0.191 REMARK 500 THR B 26 CA THR B 26 C -0.183 REMARK 500 LYS B 28 CD LYS B 28 CE 0.152 REMARK 500 LYS B 28 CE LYS B 28 NZ 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 10 CG - CD - OE1 ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU A 16 CB - CG - CD2 ANGL. DEV. = -15.0 DEGREES REMARK 500 TYR A 17 CG - CD1 - CE1 ANGL. DEV. = 5.1 DEGREES REMARK 500 GLU A 22 OE1 - CD - OE2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 25 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 LYS A 27 CD - CE - NZ ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP B 7 CB - CG - OD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU B 9 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 GLU B 10 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 GLU B 11 CG - CD - OE2 ANGL. DEV. = -17.1 DEGREES REMARK 500 LEU B 13 CB - CG - CD2 ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU B 16 CB - CG - CD2 ANGL. DEV. = -14.4 DEGREES REMARK 500 GLU B 22 CG - CD - OE1 ANGL. DEV. = 21.2 DEGREES REMARK 500 GLU B 22 CG - CD - OE2 ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 25 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 LEU B 30 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 6 -30.99 -36.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 4 10.42 REMARK 500 THR B 26 -11.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 9 24.5 L L OUTSIDE RANGE REMARK 500 GLU B 6 21.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GCL RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1GCM RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1UNT RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UNV RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UNW RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UNX RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UNU RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UNY RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UNZ RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UO0 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UO2 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UO3 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UO4 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1UO5 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL REMARK 900 MOLECULAR SURFACES OF FOUR HELIX BUNDLES REMARK 900 RELATED ID: 1CE9 RELATED DB: PDB REMARK 900 HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER REMARK 900 RELATED ID: 1DGC RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC REMARK 900 ATF/CREB SITE DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1ENV RELATED DB: PDB REMARK 900 ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV REMARK 900 -1 GP41 REMARK 900 RELATED ID: 1FAV RELATED DB: PDB REMARK 900 THE STRUCTURE OF AN HIV-1 SPECIFIC CELL REMARK 900 ENTRY INHIBITOR INCOMPLEX WITH THE HIV-1 REMARK 900 GP41 TRIMERIC CORE REMARK 900 RELATED ID: 1GK6 RELATED DB: PDB REMARK 900 HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO REMARK 900 GCN4 LEUCINE ZIPPER (Z2B) REMARK 900 RELATED ID: 1GZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A REMARK 900 CROSS-LINKED INHIBITOR OF HIV-1 ENTRY REMARK 900 BOUND TO THE GP41 HYDROPHOBIC POCKET REMARK 900 RELATED ID: 1IHQ RELATED DB: PDB REMARK 900 GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE REMARK 900 N-TERMINUS OF ARAT SHORT ALPHA TROPOMYOSIN REMARK 900 WITH THE N-TERMINUS ENCODED BYEXON 1B REMARK 900 RELATED ID: 1IJ0 RELATED DB: PDB REMARK 900 COILED COIL TRIMER GCN4-PVLS SER AT BURIED REMARK 900 D POSITION REMARK 900 RELATED ID: 1IJ1 RELATED DB: PDB REMARK 900 GCN4-PVLT COILED-COIL TRIMER WITH THREONINE REMARK 900 AT THE D(12)POSITION REMARK 900 RELATED ID: 1IJ2 RELATED DB: PDB REMARK 900 GCN4-PVTL COILED-COIL TRIMER WITH THREONINE REMARK 900 AT THE A(16)POSITION REMARK 900 RELATED ID: 1IJ3 RELATED DB: PDB REMARK 900 GCN4-PVSL COILED-COIL TRIMER WITH SERINE REMARK 900 AT THE A(16)POSITION REMARK 900 RELATED ID: 1KQL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL REGION REMARK 900 OF STRIATEDMUSCLE ALPHA-TROPOMYOSIN AT 2.7 REMARK 900 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1LD4 RELATED DB: PDB REMARK 900 PLACEMENT OF THE STRUCTURAL PROTEINS IN REMARK 900 SINDBIS VIRUS REMARK 900 RELATED ID: 1LLM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA REMARK 900 BOUND TO DNA REMARK 900 RELATED ID: 1NKN RELATED DB: PDB REMARK 900 VISUALIZING AN UNSTABLE COILED COIL: THE REMARK 900 CRYSTAL STRUCTUREOF AN N-TERMINAL SEGMENT OF REMARK 900 THE SCALLOP MYOSIN ROD REMARK 900 RELATED ID: 1PIQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC REMARK 900 COILED COIL WITH BURIED POLAR RESIDUES REMARK 900 RELATED ID: 1RB1 RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A REMARK 900 TRIGONAL AUTOMATICSOLUTION REMARK 900 RELATED ID: 1RB4 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER REMARK 900 CORE MUTANT ASN16A TETRAGONAL AUTOMATIC REMARK 900 SOLUTION REMARK 900 RELATED ID: 1RB5 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER REMARK 900 CORE MUTANT ASN16A TRIGONAL FORM REMARK 900 RELATED ID: 1RB6 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER REMARK 900 CORE MUTANT ASN16A TETRAGONAL FORM REMARK 900 RELATED ID: 1SWI RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A REMARK 900 COMPLEXED WITH BENZENE REMARK 900 RELATED ID: 1TMZ RELATED DB: PDB REMARK 900 TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- REMARK 900 TERMINUS OF ALPHA TROPOMYOSIN, NMR, 15 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1W5G RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE ( REMARK 900 ACETIMIDE MODIFICATION). REMARK 900 RELATED ID: 1W5H RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE. REMARK 900 RELATED ID: 1W5I RELATED DB: PDB REMARK 900 ABA DOES NOT AFFECT TOPOLOGY OF PLI. REMARK 900 RELATED ID: 1W5J RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1W5K RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1W5L RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL TO PARALLEL SWITCH. REMARK 900 RELATED ID: 1YSA RELATED DB: PDB REMARK 900 GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX REMARK 900 WITH AP-1 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1ZII RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN REMARK 900 THE DIMERIC STATE REMARK 900 RELATED ID: 1ZIJ RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN REMARK 900 THE TRIMERIC STATE REMARK 900 RELATED ID: 1ZIK RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN REMARK 900 THE DIMERIC STATE REMARK 900 RELATED ID: 1ZIL RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN REMARK 900 THE DIMERIC STATE REMARK 900 RELATED ID: 1ZIM RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN REMARK 900 THE TRIMERIC STATE REMARK 900 RELATED ID: 1ZTA RELATED DB: PDB REMARK 900 LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 2DGC RELATED DB: PDB REMARK 900 GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED REMARK 900 WITH ATF/CREB SITE DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER DBREF 1UO1 A -1 -1 PDB 1UO1 1UO1 -1 -1 DBREF 1UO1 A 1 33 UNP P03069 GCN4_YEAST 249 281 DBREF 1UO1 B -1 -1 PDB 1UO1 1UO1 -1 -1 DBREF 1UO1 B 1 33 UNP P03069 GCN4_YEAST 249 281 SEQADV 1UO1 ILE A 5 UNP P03069 LEU 253 CONFLICT SEQADV 1UO1 LEU A 9 UNP P03069 VAL 257 CONFLICT SEQADV 1UO1 ILE A 12 UNP P03069 LEU 260 CONFLICT SEQADV 1UO1 LEU A 16 UNP P03069 ASN 264 CONFLICT SEQADV 1UO1 ILE A 19 UNP P03069 LEU 267 CONFLICT SEQADV 1UO1 LEU A 23 UNP P03069 VAL 271 CONFLICT SEQADV 1UO1 THR A 26 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 1UO1 LEU A 30 UNP P03069 VAL 278 CONFLICT SEQADV 1UO1 ILE B 5 UNP P03069 LEU 253 CONFLICT SEQADV 1UO1 LEU B 9 UNP P03069 VAL 257 CONFLICT SEQADV 1UO1 ILE B 12 UNP P03069 LEU 260 CONFLICT SEQADV 1UO1 LEU B 16 UNP P03069 ASN 264 CONFLICT SEQADV 1UO1 ILE B 19 UNP P03069 LEU 267 CONFLICT SEQADV 1UO1 LEU B 23 UNP P03069 VAL 271 CONFLICT SEQADV 1UO1 THR B 26 UNP P03069 LEU 274 ENGINEERED MUTATION SEQADV 1UO1 LEU B 30 UNP P03069 VAL 278 CONFLICT SEQRES 1 A 34 ACE ARG MET LYS GLN ILE GLU ASP LYS LEU GLU GLU ILE SEQRES 2 A 34 LEU SER LYS LEU TYR HIS ILE GLU ASN GLU LEU ALA ARG SEQRES 3 A 34 THR LYS LYS LEU LEU GLY GLU ARG SEQRES 1 B 34 ACE ARG MET LYS GLN ILE GLU ASP LYS LEU GLU GLU ILE SEQRES 2 B 34 LEU SER LYS LEU TYR HIS ILE GLU ASN GLU LEU ALA ARG SEQRES 3 B 34 THR LYS LYS LEU LEU GLY GLU ARG HELIX 1 1 MET A 2 LEU A 30 1 29 HELIX 2 2 ARG B 1 GLY B 31 1 31 CRYST1 79.391 79.391 79.391 90.00 90.00 90.00 P 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012596 0.00000