PDB Short entry for 1UOA HEADER HYDROLASE 16-SEP-03 1UOA TITLE MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA 1-42 (PDB: TITLE 2 1IYT) IN WATER AFTER 3NANO-SECONDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMYLOID BETA, RESIDUES 597-628; COMPND 5 SYNONYM: AMYLOID BETA 1-42, APP, ABPP; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SIMULATED STRUCTURE OF AMYLOID BATE 1-42 COMPND 8 AFTER 3NANOSECOND SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: FROM PDB ID 1IYT KEYWDS AMYLOID, BETA, GROMACS, ALZHEIMER'S DISEASE EXPDTA THEORETICAL MODEL AUTHOR A.S.N.SESHASAYEE,A.SHARIFF REVDAT 1 25-SEP-03 1UOA 0 JRNL AUTH A.S.N.SESHASAYEE,A.SHARIFF JRNL TITL MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA IN JRNL TITL 2 WATER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UOA COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-SEP-2003. REMARK 100 THE EBI ID CODE IS EBI-13539. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 28 124.71 70.09 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AAP RELATED DB: PDB REMARK 900 RELATED ID: 1AMB RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE REMARK 900 (RESIDUES 1 - 28) (NMR, MINIMIZED AVERAGE REMARK 900 STRUCTURE) REMARK 900 RELATED ID: 1AMC RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE REMARK 900 (RESIDUES 1 - 28) (NMR, 5 STRUCTURES) REMARK 900 RELATED ID: 1AML RELATED DB: PDB REMARK 900 THE ALZHEIMER`S DISEASE AMYLOID A4 PEPTIDE REMARK 900 (RESIDUES 1-40) REMARK 900 RELATED ID: 1BA4 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF AMYLOID BETA- REMARK 900 PEPTIDE (1-40) IN A WATER-MICELLE REMARK 900 ENVIRONMENT. IS THE MEMBRANE-SPANNING DOMAIN REMARK 900 WHERE WE THINK IT IS? NMR, 10 STRUCTURES REMARK 900 RELATED ID: 1BA6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE METHIONINE-OXIDIZED REMARK 900 AMYLOID BETA-PEPTIDE (1-40). DOES REMARK 900 OXIDATION AFFECT CONFORMATIONAL SWITCHING? REMARK 900 NMR, 10 STRUCTURES REMARK 900 RELATED ID: 1BJB RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA[E16], REMARK 900 RESIDUES 1-28, 14 STRUCTURES REMARK 900 RELATED ID: 1BJC RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA[F16], REMARK 900 RESIDUES 1-28, 15 STRUCTURES REMARK 900 RELATED ID: 1BRC RELATED DB: PDB REMARK 900 RELATED ID: 1CA0 RELATED DB: PDB REMARK 900 BOVINE CHYMOTRYPSIN COMPLEXED TO APPI REMARK 900 RELATED ID: 1HZ3 RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE REMARK 900 (RESIDUES 10-35) REMARK 900 RELATED ID: 1IYT RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ALZHEIMER'S REMARK 900 DISEASE AMYLOID BETA-PEPTIDE (1-42) REMARK 900 RELATED ID: 1MWP RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE AMYLOID PRECURSOR REMARK 900 PROTEIN REMARK 900 RELATED ID: 1O6N RELATED DB: PDB REMARK 900 ABETA(1-16) FRAGMENT OF THE AMYLOID REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1OWT RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID REMARK 900 PRECURSORPROTEIN COPPER BINDING DOMAIN REMARK 900 RELATED ID: 1QCM RELATED DB: PDB REMARK 900 AMYLOID BETA PEPTIDE (25-35), NMR, 20 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1TAW RELATED DB: PDB REMARK 900 BOVINE TRYPSIN COMPLEXED TO APPI REMARK 900 RELATED ID: 1UO7 RELATED DB: PDB REMARK 900 MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA REMARK 900 1-42 (PDB: 1IYT) IN WATER REMARK 900 RELATED ID: 1UO8 RELATED DB: PDB REMARK 900 AFTER 2NS REMARK 900 RELATED ID: 1UOI RELATED DB: PDB REMARK 900 AFTER 4NS DBREF 1UOA A 1 42 UNP P05067 A4_HUMAN 597 638 SEQRES 1 A 42 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 A 42 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 A 42 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 A 42 VAL ILE ALA HELIX 1 1 HIS A 14 PHE A 19 1 6 HELIX 2 2 PHE A 20 GLU A 22 5 3 HELIX 3 3 ASP A 23 LYS A 28 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000