PDB Short entry for 1UZJ HEADER MATRIX PROTEIN 12-MAR-04 1UZJ TITLE INTEGRIN BINDING CBEGF22-TB4-CBEGF33 FRAGMENT OF HUMAN TITLE 2 FIBRILLIN-1, HOLO FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRILLIN-1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: BEGF22-TB4-CBEGF23, RESIDUES 1486-1647; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: EXTRA-ELLULAR MATRIX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NM554 KEYWDS MATRIX PROTEIN, EXTRA-CELLULAR MATRIX, FIBRILLIN-1, CBEGF KEYWDS 2 DOMAIN, TB DOMAIN MATRIX PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.S.J.LEE,V.KNOTT,K.HARLOS,P.A.HANDFORD,D.I.STUART REVDAT 2 24-FEB-09 1UZJ 1 VERSN REVDAT 1 08-APR-04 1UZJ 0 JRNL AUTH S.S.J.LEE,V.KNOTT,J.JOVANOVI,K.HARLOS,J.GRIMES, JRNL AUTH 2 L.CHOULIER,H.MARDON,D.I.STUART,P.A.HANDFORD JRNL TITL STRUCTURE OF THE INTEGRIN BINDING FRAGMENT FROM JRNL TITL 2 FIBRILLIN-1 GIVES NEW INSIGHTS INTO MICROFIBRIL JRNL TITL 3 ORGANIZATION JRNL REF STRUCTURE V. 12 717 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15062093 JRNL DOI 10.1016/J.STR.2004.02.023 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 25736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.6 REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 24 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 969 REMARK 3 BIN R VALUE (WORKING SET) : 0.288 REMARK 3 BIN FREE R VALUE : 0.329 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 40 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.1 REMARK 3 B22 (A**2) : 7.7 REMARK 3 B33 (A**2) : -8.8 REMARK 3 B12 (A**2) : 0.0 REMARK 3 B13 (A**2) : -2.9 REMARK 3 B23 (A**2) : 0.0 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.54 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.5 ; 4.0 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.8 ; 5.0 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.1 ; 5.0 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.2 ; 8.0 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 69 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1UZJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-04. REMARK 100 THE PDBE ID CODE IS EBI-14777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS/MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.780 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PBD FIBRILLIN I222 FORM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MG/ML PROTEIN IN 10MM REMARK 280 MES 10MM CACL2 PH6. REMARK 280 DEHYDRATED AGAINST: 15% PEG 8000, 10MM MES PH 6 REMARK 280 10MM CACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.80000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A1497 84.88 66.99 REMARK 500 SER A1508 -130.42 -138.26 REMARK 500 ASP A1516 -5.58 83.37 REMARK 500 ILE A1538 -82.39 -142.58 REMARK 500 ARG A1539 149.87 56.67 REMARK 500 ASP A1543 -139.56 83.38 REMARK 500 THR A1547 166.07 86.49 REMARK 500 ALA A1548 -52.50 -165.12 REMARK 500 ASN A1551 60.24 62.56 REMARK 500 SER A1565 -135.77 -113.59 REMARK 500 VAL A1580 -9.03 -57.77 REMARK 500 CYS A1589 68.72 -115.46 REMARK 500 VAL A1602 -2.83 70.75 REMARK 500 SER A1628 -148.24 -166.89 REMARK 500 CYS A1646 91.30 -56.96 REMARK 500 SER B2508 -119.31 -103.78 REMARK 500 ASP B2516 -6.27 85.89 REMARK 500 ILE B2538 -20.94 -155.27 REMARK 500 PRO B2540 -9.80 -58.40 REMARK 500 ASN B2551 81.98 38.88 REMARK 500 SER B2565 -133.09 -112.34 REMARK 500 CYS B2617 54.57 -153.58 REMARK 500 SER B2628 -134.20 -154.60 REMARK 500 PHE B2629 168.42 175.37 REMARK 500 CYS B2646 93.14 -68.15 REMARK 500 CYS C3497 76.48 62.67 REMARK 500 SER C3508 -141.75 -168.67 REMARK 500 ASP C3516 -20.05 86.52 REMARK 500 ILE C3538 16.96 -161.31 REMARK 500 ASP C3543 150.85 55.24 REMARK 500 ASP C3546 73.56 -157.65 REMARK 500 ALA C3548 39.42 178.32 REMARK 500 ASN C3551 80.32 63.90 REMARK 500 SER C3565 -135.69 -125.75 REMARK 500 PRO C3573 166.57 -47.76 REMARK 500 GLU C3575 102.73 -174.66 REMARK 500 ASN C3581 -48.28 172.14 REMARK 500 CYS C3589 59.60 -113.34 REMARK 500 SER C3628 -145.15 -163.64 REMARK 500 CYS C3646 92.90 -62.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1648 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1490 OE1 REMARK 620 2 SER A1508 O 75.2 REMARK 620 3 ASP A1487 OD1 137.2 136.6 REMARK 620 4 ASP A1487 OD2 138.1 137.0 44.2 REMARK 620 5 VAL A1488 O 78.5 151.0 62.1 71.8 REMARK 620 6 ASN A1504 OD1 84.3 84.0 74.6 118.8 81.7 REMARK 620 7 THR A1505 O 140.0 66.9 72.4 81.1 134.0 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1649 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1624 OD1 REMARK 620 2 THR A1625 O 86.2 REMARK 620 3 SER A1628 O 78.3 63.3 REMARK 620 4 GLU A1609 OE2 75.2 141.7 80.2 REMARK 620 5 ASP A1606 OD1 120.9 62.5 120.0 155.0 REMARK 620 6 ASP A1606 OD2 83.4 84.9 143.9 124.6 47.6 REMARK 620 7 HOH A2068 O 165.5 100.8 93.4 91.8 73.6 109.8 REMARK 620 8 ILE A1607 O 95.7 146.9 149.5 69.4 88.9 62.6 85.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2648 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B2504 OD1 REMARK 620 2 VAL B2488 O 71.2 REMARK 620 3 ASP B2487 OD1 78.9 63.4 REMARK 620 4 ASP B2487 OD2 124.4 91.3 47.2 REMARK 620 5 THR B2505 O 90.3 140.0 78.7 69.9 REMARK 620 6 SER B2508 O 94.7 145.1 147.0 122.0 68.9 REMARK 620 7 GLU B2490 OE1 80.2 70.3 133.1 143.5 142.7 76.0 REMARK 620 8 GLY B2507 O 168.6 114.6 112.5 66.4 90.5 74.9 92.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2649 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B2609 OE2 REMARK 620 2 SER B2628 O 71.0 REMARK 620 3 HOH B2067 O 85.0 104.1 REMARK 620 4 ASP B2606 OD1 147.7 127.4 65.7 REMARK 620 5 THR B2625 O 137.9 70.1 119.5 72.3 REMARK 620 6 ILE B2607 O 78.0 148.4 78.7 82.9 136.5 REMARK 620 7 ASP B2606 OD2 133.7 146.7 100.5 47.1 78.5 58.7 REMARK 620 8 ASN B2624 OD1 87.5 79.1 170.4 119.8 70.1 93.8 80.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C3648 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C3505 O REMARK 620 2 ASP C3487 OD1 83.5 REMARK 620 3 ASP C3487 OD2 72.0 42.1 REMARK 620 4 VAL C3488 O 147.1 65.3 90.1 REMARK 620 5 ASN C3504 OD1 82.8 90.0 126.7 86.6 REMARK 620 6 SER C3508 O 63.9 145.8 126.9 142.5 76.1 REMARK 620 7 GLU C3490 OE1 136.8 128.3 151.1 66.1 70.5 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C3649 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C3628 N REMARK 620 2 ILE C3607 O 141.7 REMARK 620 3 GLU C3609 OE2 111.2 59.2 REMARK 620 4 ASP C3606 OD1 82.5 90.7 146.5 REMARK 620 5 ASP C3606 OD2 119.5 79.3 129.3 47.0 REMARK 620 6 THR C3625 O 61.7 151.5 138.9 74.7 72.8 REMARK 620 7 ASN C3624 OD1 129.3 86.5 75.5 120.4 74.2 80.4 REMARK 620 8 SER C3628 O 62.0 131.9 73.4 137.2 132.3 68.0 73.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1648 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1649 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B2648 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B2649 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C3648 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C3649 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1APJ RELATED DB: PDB REMARK 900 NMR STUDY OF THE TRANSFORMING GROWTH FACTOR REMARK 900 BETA BINDINGPROTEIN-LIKE DOMAIN (TB MODULE/ REMARK 900 8-CYS DOMAIN), NMR,21 STRUCTURES REMARK 900 RELATED ID: 1EMN RELATED DB: PDB REMARK 900 NMR STUDY OF A PAIR OF FIBRILLIN CA==2 REMARK 900 +== BINDING EPIDERMAL GROWTH FACTOR-LIKE REMARK 900 DOMAINS, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1EMO RELATED DB: PDB REMARK 900 NMR STUDY OF A PAIR OF FIBRILLIN CA==2 REMARK 900 +== BINDING EPIDERMAL GROWTH FACTOR-LIKE REMARK 900 DOMAINS, 22 STRUCTURES REMARK 900 RELATED ID: 1LMJ RELATED DB: PDB REMARK 900 NMR STUDY OF THE FIBRILLIN-1 CBEGF12-13 REMARK 900 PAIR OF CA2+BINDING EPIDERMAL GROWTH FACTOR REMARK 900 -LIKE DOMAINS REMARK 900 RELATED ID: 1UZK RELATED DB: PDB REMARK 900 X_RAY STRUCTURE OF THE INTEGRIN BINDING REMARK 900 CBEGF22-TB4-CBEGF33 FRAGMENT OF HUMAN REMARK 900 FIBRILLIN-1, HOLO FORM REMARK 900 RELATED ID: 1UZP RELATED DB: PDB REMARK 900 X_RAY STRUCTURE OF THE INTEGRIN BINDING REMARK 900 CBEGF22-TB4-CBEGF33 FRAGMENT OF HUMAN REMARK 900 FIBRILLIN-1, SM BOUND FORM CBEGF23 REMARK 900 RELATED ID: 1UZQ RELATED DB: PDB REMARK 900 X_RAY STRUCTURE OF THE INTEGRIN BINDING REMARK 900 CBEGF22-TB4-CBEGF33 FRAGMENT OF HUMAN REMARK 900 FIBRILLIN-1, APO FORM CBEGF23 DBREF 1UZJ A 1486 1647 UNP P35555 FBN1_HUMAN 1486 1647 DBREF 1UZJ B 2486 2647 UNP P35555 FBN1_HUMAN 1486 1647 DBREF 1UZJ C 3486 3647 UNP P35555 FBN1_HUMAN 1486 1647 SEQRES 1 A 162 THR ASP VAL ASN GLU CYS LEU ASP PRO THR THR CYS ILE SEQRES 2 A 162 SER GLY ASN CYS VAL ASN THR PRO GLY SER TYR ILE CYS SEQRES 3 A 162 ASP CYS PRO PRO ASP PHE GLU LEU ASN PRO THR ARG VAL SEQRES 4 A 162 GLY CYS VAL ASP THR ARG SER GLY ASN CYS TYR LEU ASP SEQRES 5 A 162 ILE ARG PRO ARG GLY ASP ASN GLY ASP THR ALA CYS SER SEQRES 6 A 162 ASN GLU ILE GLY VAL GLY VAL SER LYS ALA SER CYS CYS SEQRES 7 A 162 CYS SER LEU GLY LYS ALA TRP GLY THR PRO CYS GLU MET SEQRES 8 A 162 CYS PRO ALA VAL ASN THR SER GLU TYR LYS ILE LEU CYS SEQRES 9 A 162 PRO GLY GLY GLU GLY PHE ARG PRO ASN PRO ILE THR VAL SEQRES 10 A 162 ILE LEU GLU ASP ILE ASP GLU CYS GLN GLU LEU PRO GLY SEQRES 11 A 162 LEU CYS GLN GLY GLY LYS CYS ILE ASN THR PHE GLY SER SEQRES 12 A 162 PHE GLN CYS ARG CYS PRO THR GLY TYR TYR LEU ASN GLU SEQRES 13 A 162 ASP THR ARG VAL CYS ASP SEQRES 1 B 162 THR ASP VAL ASN GLU CYS LEU ASP PRO THR THR CYS ILE SEQRES 2 B 162 SER GLY ASN CYS VAL ASN THR PRO GLY SER TYR ILE CYS SEQRES 3 B 162 ASP CYS PRO PRO ASP PHE GLU LEU ASN PRO THR ARG VAL SEQRES 4 B 162 GLY CYS VAL ASP THR ARG SER GLY ASN CYS TYR LEU ASP SEQRES 5 B 162 ILE ARG PRO ARG GLY ASP ASN GLY ASP THR ALA CYS SER SEQRES 6 B 162 ASN GLU ILE GLY VAL GLY VAL SER LYS ALA SER CYS CYS SEQRES 7 B 162 CYS SER LEU GLY LYS ALA TRP GLY THR PRO CYS GLU MET SEQRES 8 B 162 CYS PRO ALA VAL ASN THR SER GLU TYR LYS ILE LEU CYS SEQRES 9 B 162 PRO GLY GLY GLU GLY PHE ARG PRO ASN PRO ILE THR VAL SEQRES 10 B 162 ILE LEU GLU ASP ILE ASP GLU CYS GLN GLU LEU PRO GLY SEQRES 11 B 162 LEU CYS GLN GLY GLY LYS CYS ILE ASN THR PHE GLY SER SEQRES 12 B 162 PHE GLN CYS ARG CYS PRO THR GLY TYR TYR LEU ASN GLU SEQRES 13 B 162 ASP THR ARG VAL CYS ASP SEQRES 1 C 162 THR ASP VAL ASN GLU CYS LEU ASP PRO THR THR CYS ILE SEQRES 2 C 162 SER GLY ASN CYS VAL ASN THR PRO GLY SER TYR ILE CYS SEQRES 3 C 162 ASP CYS PRO PRO ASP PHE GLU LEU ASN PRO THR ARG VAL SEQRES 4 C 162 GLY CYS VAL ASP THR ARG SER GLY ASN CYS TYR LEU ASP SEQRES 5 C 162 ILE ARG PRO ARG GLY ASP ASN GLY ASP THR ALA CYS SER SEQRES 6 C 162 ASN GLU ILE GLY VAL GLY VAL SER LYS ALA SER CYS CYS SEQRES 7 C 162 CYS SER LEU GLY LYS ALA TRP GLY THR PRO CYS GLU MET SEQRES 8 C 162 CYS PRO ALA VAL ASN THR SER GLU TYR LYS ILE LEU CYS SEQRES 9 C 162 PRO GLY GLY GLU GLY PHE ARG PRO ASN PRO ILE THR VAL SEQRES 10 C 162 ILE LEU GLU ASP ILE ASP GLU CYS GLN GLU LEU PRO GLY SEQRES 11 C 162 LEU CYS GLN GLY GLY LYS CYS ILE ASN THR PHE GLY SER SEQRES 12 C 162 PHE GLN CYS ARG CYS PRO THR GLY TYR TYR LEU ASN GLU SEQRES 13 C 162 ASP THR ARG VAL CYS ASP HET CA A1648 1 HET CA A1649 1 HET CA B2648 1 HET CA B2649 1 HET CA C3648 1 HET CA C3649 1 HETNAM CA CALCIUM ION FORMUL 4 CA 6(CA 2+) FORMUL 10 HOH *215(H2 O1) HELIX 1 1 ASN A 1489 ASP A 1493 5 5 HELIX 2 2 SER A 1558 CYS A 1564 1 7 HELIX 3 3 THR A 1582 CYS A 1589 1 8 HELIX 4 4 ASP A 1608 LEU A 1613 1 6 HELIX 5 5 PRO A 1614 CYS A 1617 5 4 HELIX 6 6 ASN B 2489 ASP B 2493 5 5 HELIX 7 7 SER B 2558 CYS B 2564 1 7 HELIX 8 8 THR B 2582 CYS B 2589 1 8 HELIX 9 9 ASP B 2608 LEU B 2613 1 6 HELIX 10 10 PRO B 2614 CYS B 2617 5 4 HELIX 11 11 ASN C 3489 ASP C 3493 5 5 HELIX 12 12 SER C 3558 CYS C 3564 1 7 HELIX 13 13 THR C 3582 CYS C 3589 1 8 HELIX 14 14 ASP C 3608 LEU C 3613 1 6 HELIX 15 15 PRO C 3614 CYS C 3617 5 4 SHEET 1 AA 2 ASN A1501 ASN A1504 0 SHEET 2 AA 2 TYR A1509 ASP A1512 -1 O ILE A1510 N VAL A1503 SHEET 1 AB 2 GLU A1518 LEU A1519 0 SHEET 2 AB 2 CYS A1526 VAL A1527 -1 O VAL A1527 N GLU A1518 SHEET 1 AC 4 SER A1550 VAL A1557 0 SHEET 2 AC 4 GLY A1532 ASP A1537 -1 O GLY A1532 N VAL A1557 SHEET 3 AC 4 ALA A1569 TRP A1570 -1 O ALA A1569 N TYR A1535 SHEET 4 AC 4 GLU A1575 MET A1576 -1 O GLU A1575 N TRP A1570 SHEET 1 AD 2 PHE A1595 PRO A1597 0 SHEET 2 AD 2 LEU A1604 ASP A1606 -1 O GLU A1605 N ARG A1596 SHEET 1 AE 2 LYS A1621 THR A1625 0 SHEET 2 AE 2 SER A1628 ARG A1632 -1 O SER A1628 N THR A1625 SHEET 1 AF 2 LEU A1639 ASN A1640 0 SHEET 2 AF 2 VAL A1645 CYS A1646 -1 O VAL A1645 N ASN A1640 SHEET 1 BA 2 ASN B2501 ASN B2504 0 SHEET 2 BA 2 TYR B2509 ASP B2512 -1 O ILE B2510 N VAL B2503 SHEET 1 BB 2 GLU B2518 LEU B2519 0 SHEET 2 BB 2 CYS B2526 VAL B2527 -1 O VAL B2527 N GLU B2518 SHEET 1 BC 4 SER B2550 VAL B2557 0 SHEET 2 BC 4 GLY B2532 ASP B2537 -1 O GLY B2532 N VAL B2557 SHEET 3 BC 4 ALA B2569 TRP B2570 -1 O ALA B2569 N TYR B2535 SHEET 4 BC 4 GLU B2575 MET B2576 -1 O GLU B2575 N TRP B2570 SHEET 1 BD 2 PHE B2595 PRO B2597 0 SHEET 2 BD 2 LEU B2604 ASP B2606 -1 O GLU B2605 N ARG B2596 SHEET 1 BE 2 LYS B2621 THR B2625 0 SHEET 2 BE 2 SER B2628 ARG B2632 -1 O SER B2628 N THR B2625 SHEET 1 BF 2 LEU B2639 ASN B2640 0 SHEET 2 BF 2 VAL B2645 CYS B2646 -1 O VAL B2645 N ASN B2640 SHEET 1 CA 2 ASN C3501 THR C3505 0 SHEET 2 CA 2 SER C3508 ASP C3512 -1 O SER C3508 N THR C3505 SHEET 1 CB 2 GLU C3518 LEU C3519 0 SHEET 2 CB 2 CYS C3526 VAL C3527 -1 O VAL C3527 N GLU C3518 SHEET 1 CC 3 SER C3550 VAL C3557 0 SHEET 2 CC 3 GLY C3532 ASP C3537 -1 O GLY C3532 N VAL C3557 SHEET 3 CC 3 ALA C3569 TRP C3570 -1 O ALA C3569 N TYR C3535 SHEET 1 CD 2 PHE C3595 PRO C3597 0 SHEET 2 CD 2 LEU C3604 ASP C3606 -1 O GLU C3605 N ARG C3596 SHEET 1 CE 2 LYS C3621 THR C3625 0 SHEET 2 CE 2 SER C3628 ARG C3632 -1 O SER C3628 N THR C3625 SHEET 1 CF 2 LEU C3639 ASN C3640 0 SHEET 2 CF 2 VAL C3645 CYS C3646 -1 O VAL C3645 N ASN C3640 SSBOND 1 CYS A 1491 CYS A 1502 1555 1555 2.05 SSBOND 2 CYS A 1497 CYS A 1511 1555 1555 2.03 SSBOND 3 CYS A 1513 CYS A 1526 1555 1555 2.04 SSBOND 4 CYS A 1534 CYS A 1562 1555 1555 2.04 SSBOND 5 CYS A 1549 CYS A 1574 1555 1555 2.04 SSBOND 6 CYS A 1563 CYS A 1577 1555 1555 2.04 SSBOND 7 CYS A 1564 CYS A 1589 1555 1555 2.03 SSBOND 8 CYS A 1610 CYS A 1622 1555 1555 2.02 SSBOND 9 CYS A 1617 CYS A 1631 1555 1555 2.03 SSBOND 10 CYS A 1633 CYS A 1646 1555 1555 2.04 SSBOND 11 CYS B 2491 CYS B 2502 1555 1555 2.04 SSBOND 12 CYS B 2497 CYS B 2511 1555 1555 2.04 SSBOND 13 CYS B 2513 CYS B 2526 1555 1555 2.04 SSBOND 14 CYS B 2534 CYS B 2562 1555 1555 2.05 SSBOND 15 CYS B 2549 CYS B 2574 1555 1555 2.03 SSBOND 16 CYS B 2563 CYS B 2577 1555 1555 2.05 SSBOND 17 CYS B 2564 CYS B 2589 1555 1555 2.04 SSBOND 18 CYS B 2610 CYS B 2622 1555 1555 2.04 SSBOND 19 CYS B 2617 CYS B 2631 1555 1555 2.04 SSBOND 20 CYS B 2633 CYS B 2646 1555 1555 2.04 SSBOND 21 CYS C 3491 CYS C 3502 1555 1555 2.03 SSBOND 22 CYS C 3497 CYS C 3511 1555 1555 2.04 SSBOND 23 CYS C 3513 CYS C 3526 1555 1555 2.04 SSBOND 24 CYS C 3534 CYS C 3562 1555 1555 2.04 SSBOND 25 CYS C 3549 CYS C 3574 1555 1555 2.03 SSBOND 26 CYS C 3563 CYS C 3577 1555 1555 2.03 SSBOND 27 CYS C 3564 CYS C 3589 1555 1555 2.03 SSBOND 28 CYS C 3610 CYS C 3622 1555 1555 2.03 SSBOND 29 CYS C 3617 CYS C 3631 1555 1555 2.03 SSBOND 30 CYS C 3633 CYS C 3646 1555 1555 2.04 LINK CA CA A1648 OE1 GLU A1490 1555 1555 2.55 LINK CA CA A1648 O SER A1508 1555 1555 2.51 LINK CA CA A1648 OD1 ASP A1487 1555 1555 3.13 LINK CA CA A1648 OD2 ASP A1487 1555 1555 2.54 LINK CA CA A1648 O VAL A1488 1555 1555 2.47 LINK CA CA A1648 OD1 ASN A1504 1555 1555 2.20 LINK CA CA A1648 O THR A1505 1555 1555 2.63 LINK CA CA A1649 OD1 ASN A1624 1555 1555 2.34 LINK CA CA A1649 O THR A1625 1555 1555 2.57 LINK CA CA A1649 O SER A1628 1555 1555 2.33 LINK CA CA A1649 OE2 GLU A1609 1555 1555 2.42 LINK CA CA A1649 OD1 ASP A1606 1555 1555 2.54 LINK CA CA A1649 OD2 ASP A1606 1555 1555 2.88 LINK CA CA A1649 O HOH A2068 1555 1555 2.40 LINK CA CA A1649 O ILE A1607 1555 1555 2.26 LINK CA CA B2648 OD1 ASN B2504 1555 1555 2.62 LINK CA CA B2648 O VAL B2488 1555 1555 2.23 LINK CA CA B2648 OD1 ASP B2487 1555 1555 2.57 LINK CA CA B2648 OD2 ASP B2487 1555 1555 2.85 LINK CA CA B2648 O THR B2505 1555 1555 2.52 LINK CA CA B2648 O SER B2508 1555 1555 2.50 LINK CA CA B2648 OE1 GLU B2490 1555 1555 2.46 LINK CA CA B2648 O GLY B2507 1555 1555 3.24 LINK CA CA B2649 O SER B2628 1555 1555 2.26 LINK CA CA B2649 O HOH B2067 1555 1555 2.51 LINK CA CA B2649 OD1 ASP B2606 1555 1555 2.68 LINK CA CA B2649 O THR B2625 1555 1555 2.47 LINK CA CA B2649 O ILE B2607 1555 1555 2.37 LINK CA CA B2649 OD2 ASP B2606 1555 1555 2.85 LINK CA CA B2649 OD1 ASN B2624 1555 1555 2.30 LINK CA CA B2649 OE2 GLU B2609 1555 1555 2.40 LINK CA CA C3648 OD1 ASP C3487 1555 1555 3.07 LINK CA CA C3648 OD2 ASP C3487 1555 1555 2.97 LINK CA CA C3648 O VAL C3488 1555 1555 2.36 LINK CA CA C3648 OD1 ASN C3504 1555 1555 2.26 LINK CA CA C3648 O SER C3508 1555 1555 2.63 LINK CA CA C3648 OE1 GLU C3490 1555 1555 2.87 LINK CA CA C3648 O THR C3505 1555 1555 2.52 LINK CA CA C3649 O ILE C3607 1555 1555 2.61 LINK CA CA C3649 OE2 GLU C3609 1555 1555 2.58 LINK CA CA C3649 OD1 ASP C3606 1555 1555 2.46 LINK CA CA C3649 OD2 ASP C3606 1555 1555 2.97 LINK CA CA C3649 O THR C3625 1555 1555 2.40 LINK CA CA C3649 OD1 ASN C3624 1555 1555 2.68 LINK CA CA C3649 O SER C3628 1555 1555 2.14 LINK CA CA C3649 N SER C3628 1555 1555 3.09 CISPEP 1 THR A 1572 PRO A 1573 0 -0.06 CISPEP 2 THR B 2572 PRO B 2573 0 0.07 CISPEP 3 THR C 3572 PRO C 3573 0 -0.27 SITE 1 AC1 6 ASP A1487 VAL A1488 GLU A1490 ASN A1504 SITE 2 AC1 6 THR A1505 SER A1508 SITE 1 AC2 7 ASP A1606 ILE A1607 GLU A1609 ASN A1624 SITE 2 AC2 7 THR A1625 SER A1628 HOH A2068 SITE 1 AC3 7 ASP B2487 VAL B2488 GLU B2490 ASN B2504 SITE 2 AC3 7 THR B2505 GLY B2507 SER B2508 SITE 1 AC4 7 HOH B2067 ASP B2606 ILE B2607 GLU B2609 SITE 2 AC4 7 ASN B2624 THR B2625 SER B2628 SITE 1 AC5 6 ASP C3487 VAL C3488 GLU C3490 ASN C3504 SITE 2 AC5 6 THR C3505 SER C3508 SITE 1 AC6 6 ASP C3606 ILE C3607 GLU C3609 ASN C3624 SITE 2 AC6 6 THR C3625 SER C3628 CRYST1 43.100 105.600 65.000 90.00 104.20 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023202 0.000000 0.005871 0.00000 SCALE2 0.000000 0.009470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015869 0.00000