PDB Short entry for 1V1A
HEADER    TRANSFERASE                             12-APR-04   1V1A              
TITLE     2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND 2-
TITLE    2 KETO-3-DEOXYGLUCONATE AND ADP                                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 2-KETO-3-DEOXYGLUCONATE KINASE;                            
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS;                           
SOURCE   3 ORGANISM_TAXID: 300852;                                              
SOURCE   4 STRAIN: HB8;                                                         
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PET11A                                    
KEYWDS    2-KETO-3-DEOXYGLUCONATE KINASE, ATP, THERMUS THERMOPHILUS, STRUCTURAL 
KEYWDS   2 GENOMICS, TRANSFERASE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS          
KEYWDS   3 INITIATIVE, RSGI                                                     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    T.H.TAHIROV,E.INAGAKI                                                 
REVDAT   5   27-FEB-19 1V1A    1       JRNL   REMARK                            
REVDAT   4   15-APR-15 1V1A    1       REMARK VERSN  FORMUL                     
REVDAT   3   24-FEB-09 1V1A    1       VERSN                                    
REVDAT   2   01-JUL-04 1V1A    1       JRNL                                     
REVDAT   1   14-APR-04 1V1A    0                                                
JRNL        AUTH   N.OHSHIMA,E.INAGAKI,K.YASUIKE,K.TAKIO,T.H.TAHIROV            
JRNL        TITL   STRUCTURE OF THERMUS THERMOPHILUS 2-KETO-3-DEOXYGLUCONATE    
JRNL        TITL 2 KINASE: EVIDENCE FOR RECOGNITION OF AN OPEN CHAIN SUBSTRATE. 
JRNL        REF    J. MOL. BIOL.                 V. 340   477 2004              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   15210349                                                     
JRNL        DOI    10.1016/J.JMB.2004.04.074                                    
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   E.INAGAKI,Y.UKITA,M.KUMEI,Y.KAJIHARA,T.H.TAHIROV             
REMARK   1  TITL   CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF 
REMARK   1  TITL 2 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS.    
REMARK   1  REF    ACTA CRYSTALLOGR.,SECT.D      V.  60   761 2004              
REMARK   1  REFN                   ISSN 0907-4449                               
REMARK   1  PMID   15039578                                                     
REMARK   1  DOI    10.1107/S0907444904002665                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.10 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 29.82                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 1289180.400                    
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 95.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 37822                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.180                           
REMARK   3   FREE R VALUE                     : 0.268                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.700                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1852                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.008                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 10                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.10                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.18                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 91.00                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 3387                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2938                       
REMARK   3   BIN FREE R VALUE                    : 0.3657                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 5.36                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 212                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.023                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4594                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 78                                      
REMARK   3   SOLVENT ATOMS            : 211                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 13.10                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 51.40                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -3.70900                                             
REMARK   3    B22 (A**2) : -3.70900                                             
REMARK   3    B33 (A**2) : 7.41700                                              
REMARK   3    B12 (A**2) : -3.06400                                             
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.25                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.42                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.35                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.53                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.008                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.300                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 23.00                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.850                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 5.940 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 8.460 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 8.640 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 11.510; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.36                                                 
REMARK   3   BSOL        : 85.77                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  3  : DHA.PAR                                        
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : WATER_REP.TOP                                  
REMARK   3  TOPOLOGY FILE  3   : DHA.TOP                                        
REMARK   3  TOPOLOGY FILE  4   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: CRYSTAL IS WITH HEMIHEDRAL TWINNING,      
REMARK   3  TWINNING OPERATOR IS "H, -H-K, -L", TWINNING FRACTION IS 0.5        
REMARK   4                                                                      
REMARK   4 1V1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-04.                  
REMARK 100 THE DEPOSITION ID IS D_1290014976.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 15-MAR-03                          
REMARK 200  TEMPERATURE           (KELVIN) : 100.0                              
REMARK 200  PH                             : 8.50                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL26B1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.00                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU IMAGE PLATE R-AXISV         
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 38730                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.100                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -0.400                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.9                               
REMARK 200  DATA REDUNDANCY                : 4.580                              
REMARK 200  R MERGE                    (I) : 0.05600                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 19.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.18                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 96.2                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.35500                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.680                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY V19                                        
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 52.50                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR-DIFFUSION SITTING DROP AT 298     
REMARK 280  K. 10.0 MG/ML OF PROTEIN SOLUTION CONTAINING 5 MM KDG AND 5 MM      
REMARK 280  AMP-PNP WAS MIXED WITH RESERVOIR SOLUTION CONTAINING 0.35 M         
REMARK 280  AMMONIUM SULFATE AND 0.1 M TRIS-HCL BUFFER, PH 8.5. BEFORE THE      
REMARK 280  DATA COLLECTION THE CRYSTAL WAS SOAKED IN SOLUTION CONTAINING       
REMARK 280  0.35 M MAGNESIUM CHLORIDE INSTEAD OF AMMONIUM SULFATE. THE          
REMARK 280  CRYOPROTECTANT CONTAINED 33% OF ETHYLENE GLYCOL IN ADDITION TO      
REMARK 280  MAGNESIUM CHLORIDE, BUFFER AND LIGANDS, PH 8.50, VAPOR DIFFUSION,   
REMARK 280  SITTING DROP                                                        
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   -X,-Y,Z+1/2                                             
REMARK 290       5555   Y,-X+Y,Z+1/2                                            
REMARK 290       6555   X-Y,X,Z+1/2                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       84.35050            
REMARK 290   SMTRY1   5  0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   5 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000  1.000000       84.35050            
REMARK 290   SMTRY1   6  0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000  1.000000       84.35050            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -0.500000  0.866025  0.000000       42.16050            
REMARK 350   BIOMT2   2 -0.866025 -0.500000  0.000000       73.02413            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   3 -0.500000 -0.866025  0.000000       84.32100            
REMARK 350   BIOMT2   3  0.866025 -0.500000  0.000000        0.00000            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ALA A   303                                                      
REMARK 465     THR A   304                                                      
REMARK 465     GLN A   305                                                      
REMARK 465     THR A   306                                                      
REMARK 465     PHE A   307                                                      
REMARK 465     MET A   308                                                      
REMARK 465     ARG A   309                                                      
REMARK 465     ALA B   303                                                      
REMARK 465     THR B   304                                                      
REMARK 465     GLN B   305                                                      
REMARK 465     THR B   306                                                      
REMARK 465     PHE B   307                                                      
REMARK 465     MET B   308                                                      
REMARK 465     ARG B   309                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 302    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS A 302    NZ                                                  
REMARK 470     LYS B 302    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS B 302    NZ                                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    PRO A  83      149.10    -32.34                                   
REMARK 500    LEU A  96       34.63    -94.20                                   
REMARK 500    LEU A 113       98.52      2.08                                   
REMARK 500    ASP A 121      -14.88    -49.85                                   
REMARK 500    SER A 139      156.27    177.46                                   
REMARK 500    ASN A 165       63.65     32.02                                   
REMARK 500    GLU A 194      -54.12    -23.24                                   
REMARK 500    LEU A 211       52.59    -91.43                                   
REMARK 500    ALA A 225      140.56    169.24                                   
REMARK 500    ASP A 230       73.29     49.01                                   
REMARK 500    ALA A 243       90.34    -54.66                                   
REMARK 500    VAL A 244      -85.33    -72.73                                   
REMARK 500    HIS A 288       20.26   -148.57                                   
REMARK 500    GLU A 298      -31.06    -34.28                                   
REMARK 500    LEU A 301      -49.81    109.98                                   
REMARK 500    GLU B  92      118.46   -165.96                                   
REMARK 500    SER B 108      159.33    -49.13                                   
REMARK 500    LEU B 113      101.11    -23.38                                   
REMARK 500    PHE B 118      171.77    174.96                                   
REMARK 500    ALA B 149      -74.56    -47.51                                   
REMARK 500    TRP B 171      165.52    179.30                                   
REMARK 500    LYS B 223       25.76    -75.60                                   
REMARK 500    VAL B 244      -72.58    -67.06                                   
REMARK 500    HIS B 288       16.63   -151.91                                   
REMARK 500    LEU B 301      -67.80     -8.48                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDG A 1302                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1303                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDG B 1302                
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1303                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1J5V   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF 2-KETO-3-DEOXYGLUCONATE KINASE (TM0067)FROM     
REMARK 900 THERMOTOGA MARITIMA AT 2.3 A RESOLUTION                              
REMARK 900 RELATED ID: 1V19   RELATED DB: PDB                                   
REMARK 900 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS             
REMARK 900 RELATED ID: 1V1B   RELATED DB: PDB                                   
REMARK 900 2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND  
REMARK 900 ATP                                                                  
DBREF  1V1A A    1   309  PDB    1V1A     1V1A             1    309             
DBREF  1V1A B    1   309  PDB    1V1A     1V1A             1    309             
SEQRES   1 A  309  MET LEU GLU VAL VAL THR ALA GLY GLU PRO LEU VAL ALA          
SEQRES   2 A  309  LEU VAL PRO GLN GLU PRO GLY HIS LEU ARG GLY LYS ARG          
SEQRES   3 A  309  LEU LEU GLU VAL TYR VAL GLY GLY ALA GLU VAL ASN VAL          
SEQRES   4 A  309  ALA VAL ALA LEU ALA ARG LEU GLY VAL LYS VAL GLY PHE          
SEQRES   5 A  309  VAL GLY ARG VAL GLY GLU ASP GLU LEU GLY ALA MET VAL          
SEQRES   6 A  309  GLU GLU ARG LEU ARG ALA GLU GLY VAL ASP LEU THR HIS          
SEQRES   7 A  309  PHE ARG ARG ALA PRO GLY PHE THR GLY LEU TYR LEU ARG          
SEQRES   8 A  309  GLU TYR LEU PRO LEU GLY GLN GLY ARG VAL PHE TYR TYR          
SEQRES   9 A  309  ARG LYS GLY SER ALA GLY SER ALA LEU ALA PRO GLY ALA          
SEQRES  10 A  309  PHE ASP PRO ASP TYR LEU GLU GLY VAL ARG PHE LEU HIS          
SEQRES  11 A  309  LEU SER GLY ILE THR PRO ALA LEU SER PRO GLU ALA ARG          
SEQRES  12 A  309  ALA PHE SER LEU TRP ALA MET GLU GLU ALA LYS ARG ARG          
SEQRES  13 A  309  GLY VAL ARG VAL SER LEU ASP VAL ASN TYR ARG GLN THR          
SEQRES  14 A  309  LEU TRP SER PRO GLU GLU ALA ARG GLY PHE LEU GLU ARG          
SEQRES  15 A  309  ALA LEU PRO GLY VAL ASP LEU LEU PHE LEU SER GLU GLU          
SEQRES  16 A  309  GLU ALA GLU LEU LEU PHE GLY ARG VAL GLU GLU ALA LEU          
SEQRES  17 A  309  ARG ALA LEU SER ALA PRO GLU VAL VAL LEU LYS ARG GLY          
SEQRES  18 A  309  ALA LYS GLY ALA TRP ALA PHE VAL ASP GLY ARG ARG VAL          
SEQRES  19 A  309  GLU GLY SER ALA PHE ALA VAL GLU ALA VAL ASP PRO VAL          
SEQRES  20 A  309  GLY ALA GLY ASP ALA PHE ALA ALA GLY TYR LEU ALA GLY          
SEQRES  21 A  309  ALA VAL TRP GLY LEU PRO VAL GLU GLU ARG LEU ARG LEU          
SEQRES  22 A  309  ALA ASN LEU LEU GLY ALA SER VAL ALA ALA SER ARG GLY          
SEQRES  23 A  309  ASP HIS GLU GLY ALA PRO TYR ARG GLU ASP LEU GLU VAL          
SEQRES  24 A  309  LEU LEU LYS ALA THR GLN THR PHE MET ARG                      
SEQRES   1 B  309  MET LEU GLU VAL VAL THR ALA GLY GLU PRO LEU VAL ALA          
SEQRES   2 B  309  LEU VAL PRO GLN GLU PRO GLY HIS LEU ARG GLY LYS ARG          
SEQRES   3 B  309  LEU LEU GLU VAL TYR VAL GLY GLY ALA GLU VAL ASN VAL          
SEQRES   4 B  309  ALA VAL ALA LEU ALA ARG LEU GLY VAL LYS VAL GLY PHE          
SEQRES   5 B  309  VAL GLY ARG VAL GLY GLU ASP GLU LEU GLY ALA MET VAL          
SEQRES   6 B  309  GLU GLU ARG LEU ARG ALA GLU GLY VAL ASP LEU THR HIS          
SEQRES   7 B  309  PHE ARG ARG ALA PRO GLY PHE THR GLY LEU TYR LEU ARG          
SEQRES   8 B  309  GLU TYR LEU PRO LEU GLY GLN GLY ARG VAL PHE TYR TYR          
SEQRES   9 B  309  ARG LYS GLY SER ALA GLY SER ALA LEU ALA PRO GLY ALA          
SEQRES  10 B  309  PHE ASP PRO ASP TYR LEU GLU GLY VAL ARG PHE LEU HIS          
SEQRES  11 B  309  LEU SER GLY ILE THR PRO ALA LEU SER PRO GLU ALA ARG          
SEQRES  12 B  309  ALA PHE SER LEU TRP ALA MET GLU GLU ALA LYS ARG ARG          
SEQRES  13 B  309  GLY VAL ARG VAL SER LEU ASP VAL ASN TYR ARG GLN THR          
SEQRES  14 B  309  LEU TRP SER PRO GLU GLU ALA ARG GLY PHE LEU GLU ARG          
SEQRES  15 B  309  ALA LEU PRO GLY VAL ASP LEU LEU PHE LEU SER GLU GLU          
SEQRES  16 B  309  GLU ALA GLU LEU LEU PHE GLY ARG VAL GLU GLU ALA LEU          
SEQRES  17 B  309  ARG ALA LEU SER ALA PRO GLU VAL VAL LEU LYS ARG GLY          
SEQRES  18 B  309  ALA LYS GLY ALA TRP ALA PHE VAL ASP GLY ARG ARG VAL          
SEQRES  19 B  309  GLU GLY SER ALA PHE ALA VAL GLU ALA VAL ASP PRO VAL          
SEQRES  20 B  309  GLY ALA GLY ASP ALA PHE ALA ALA GLY TYR LEU ALA GLY          
SEQRES  21 B  309  ALA VAL TRP GLY LEU PRO VAL GLU GLU ARG LEU ARG LEU          
SEQRES  22 B  309  ALA ASN LEU LEU GLY ALA SER VAL ALA ALA SER ARG GLY          
SEQRES  23 B  309  ASP HIS GLU GLY ALA PRO TYR ARG GLU ASP LEU GLU VAL          
SEQRES  24 B  309  LEU LEU LYS ALA THR GLN THR PHE MET ARG                      
HET    KDG  A1302      12                                                       
HET    ADP  A1303      27                                                       
HET    KDG  B1302      12                                                       
HET    ADP  B1303      27                                                       
HETNAM     KDG 2-KETO-3-DEOXYGLUCONATE                                          
HETNAM     ADP ADENOSINE-5'-DIPHOSPHATE                                         
FORMUL   3  KDG    2(C6 H10 O6)                                                 
FORMUL   4  ADP    2(C10 H15 N5 O10 P2)                                         
FORMUL   7  HOH   *211(H2 O)                                                    
HELIX    1   1 HIS A   21  LYS A   25  5                                   5    
HELIX    2   2 GLY A   34  LEU A   46  1                                  13    
HELIX    3   3 ASP A   59  GLY A   73  1                                  15    
HELIX    4   4 ALA A  109  LEU A  113  5                                   5    
HELIX    5   5 ASP A  119  GLU A  124  5                                   6    
HELIX    6   6 ILE A  134  LEU A  138  5                                   5    
HELIX    7   7 SER A  139  ARG A  155  1                                  17    
HELIX    8   8 SER A  172  LEU A  184  1                                  13    
HELIX    9   9 PRO A  185  VAL A  187  5                                   3    
HELIX   10  10 GLU A  194  GLY A  202  1                                   9    
HELIX   11  11 ARG A  203  LEU A  211  1                                   9    
HELIX   12  12 GLY A  221  LYS A  223  5                                   3    
HELIX   13  13 GLY A  248  TRP A  263  1                                  16    
HELIX   14  14 PRO A  266  ALA A  283  1                                  18    
HELIX   15  15 TYR A  293  GLU A  298  1                                   6    
HELIX   16  16 HIS B   21  LYS B   25  5                                   5    
HELIX   17  17 GLY B   34  LEU B   46  1                                  13    
HELIX   18  18 ASP B   59  GLU B   72  1                                  14    
HELIX   19  19 SER B  108  ALA B  112  5                                   5    
HELIX   20  20 ASP B  119  LEU B  123  5                                   5    
HELIX   21  21 ILE B  134  LEU B  138  5                                   5    
HELIX   22  22 SER B  139  ARG B  155  1                                  17    
HELIX   23  23 SER B  172  LEU B  184  1                                  13    
HELIX   24  24 PRO B  185  VAL B  187  5                                   3    
HELIX   25  25 GLU B  194  LEU B  200  1                                   7    
HELIX   26  26 ARG B  203  LEU B  211  1                                   9    
HELIX   27  27 GLY B  221  LYS B  223  5                                   3    
HELIX   28  28 GLY B  248  TRP B  263  1                                  16    
HELIX   29  29 PRO B  266  ALA B  283  1                                  18    
HELIX   30  30 TYR B  293  GLU B  298  1                                   6    
SHEET    1  AA 9 PHE A  79  ARG A  81  0                                        
SHEET    2  AA 9 VAL A  50  VAL A  56  1  O  GLY A  54   N  ARG A  80           
SHEET    3  AA 9 VAL A   4  ALA A   7  1  O  VAL A   4   N  GLY A  51           
SHEET    4  AA 9 PHE A 128  SER A 132  1  O  PHE A 128   N  VAL A   5           
SHEET    5  AA 9 ARG A 159  ASP A 163  1  O  ARG A 159   N  LEU A 129           
SHEET    6  AA 9 LEU A 189  SER A 193  1  O  LEU A 189   N  LEU A 162           
SHEET    7  AA 9 GLU A 215  LYS A 219  1  O  GLU A 215   N  LEU A 190           
SHEET    8  AA 9 ALA A 225  VAL A 229 -1  O  TRP A 226   N  LEU A 218           
SHEET    9  AA 9 ARG A 232  GLU A 235 -1  O  ARG A 232   N  VAL A 229           
SHEET    1  AB 8 GLY A  99  TYR A 104  0                                        
SHEET    2  AB 8 LEU A  88  TYR A  93 -1  O  LEU A  88   N  TYR A 104           
SHEET    3  AB 8 LEU A  11  VAL A  15  1  O  VAL A  12   N  TYR A  89           
SHEET    4  AB 8 LEU A  27  GLY A  33 -1  O  GLU A  29   N  VAL A  15           
SHEET    5  AB 8 LEU B  27  GLY B  33 -1  O  LEU B  28   N  LEU A  28           
SHEET    6  AB 8 LEU B  11  PRO B  16 -1  O  LEU B  11   N  GLY B  33           
SHEET    7  AB 8 LEU B  88  TYR B  93  1  O  TYR B  89   N  LEU B  14           
SHEET    8  AB 8 GLY B  99  TYR B 104 -1  O  ARG B 100   N  GLU B  92           
SHEET    1  BA 3 VAL B   4  ALA B   7  0                                        
SHEET    2  BA 3 VAL B  50  VAL B  56  1  O  GLY B  51   N  THR B   6           
SHEET    3  BA 3 PHE B  79  ARG B  81  1  O  ARG B  80   N  VAL B  56           
SHEET    1  BB 6 LEU B 131  SER B 132  0                                        
SHEET    2  BB 6 SER B 161  ASP B 163  1  O  SER B 161   N  LEU B 131           
SHEET    3  BB 6 LEU B 189  SER B 193  1  O  LEU B 189   N  LEU B 162           
SHEET    4  BB 6 GLU B 215  LYS B 219  1  O  GLU B 215   N  LEU B 190           
SHEET    5  BB 6 ALA B 225  VAL B 229 -1  O  TRP B 226   N  LEU B 218           
SHEET    6  BB 6 ARG B 232  GLY B 236 -1  O  ARG B 232   N  VAL B 229           
SITE     1 AC1 14 LEU A  11  GLY A  34  ALA A  35  ASN A  38                    
SITE     2 AC1 14 TYR A  89  TYR A 103  ARG A 105  ILE A 134                    
SITE     3 AC1 14 ARG A 167  GLY A 248  ASP A 251  ASP A 287                    
SITE     4 AC1 14 HOH A2050  HOH A2117                                          
SITE     1 AC2 14 LYS A 219  GLY A 221  GLY A 224  PHE A 239                    
SITE     2 AC2 14 ALA A 249  GLY A 250  ASN A 275  ALA A 279                    
SITE     3 AC2 14 HOH A2073  HOH A2074  HOH A2117  HOH A2118                    
SITE     4 AC2 14 HOH A2119  HOH A2120                                          
SITE     1 AC3 11 GLY B  34  ALA B  35  ASN B  38  TYR B  89                    
SITE     2 AC3 11 TYR B 103  ARG B 105  ILE B 134  ARG B 167                    
SITE     3 AC3 11 ASP B 251  ASP B 287  HOH B2040                               
SITE     1 AC4 11 LYS B 219  GLY B 221  GLY B 224  PHE B 239                    
SITE     2 AC4 11 ALA B 243  GLY B 250  PHE B 253  ASN B 275                    
SITE     3 AC4 11 HOH B2058  HOH B2089  HOH B2091                               
CRYST1   84.321   84.321  168.701  90.00  90.00 120.00 P 63         12          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.011859  0.006847  0.000000        0.00000                         
SCALE2      0.000000  0.013694  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.005928        0.00000