PDB Short entry for 1VAS HEADER HYDROLASE/DNA 08-SEP-95 1VAS TITLE ATOMIC MODEL OF A PYRIMIDINE DIMER SPECIFIC EXCISION REPAIR ENZYME TITLE 2 COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED DNA TITLE 3 RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*TP*CP*GP*CP*GP*TP*TP*GP*CP*GP*CP*T)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*AP*GP*CP*GP*CP*AP*AP*CP*GP*CP*GP*A)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (T4 ENDONUCLEASE V (E.C.3.1.25.1)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 7 ORGANISM_TAXID: 10665; SOURCE 8 GENE: DENV; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_GENE: DENV KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.G.VASSYLYEV,T.KASHIWAGI,Y.MIKAMI,M.ARIYOSHI,S.IWAI,E.OHTSUKA, AUTHOR 2 K.MORIKAWA REVDAT 6 14-FEB-24 1VAS 1 REMARK REVDAT 5 03-NOV-21 1VAS 1 SEQADV LINK REVDAT 4 01-MAY-13 1VAS 1 LINK REVDAT REMARK REVDAT 3 24-FEB-09 1VAS 1 VERSN REVDAT 2 01-APR-03 1VAS 1 JRNL REVDAT 1 31-JAN-96 1VAS 0 JRNL AUTH D.G.VASSYLYEV,T.KASHIWAGI,Y.MIKAMI,M.ARIYOSHI,S.IWAI, JRNL AUTH 2 E.OHTSUKA,K.MORIKAWA JRNL TITL ATOMIC MODEL OF A PYRIMIDINE DIMER EXCISION REPAIR ENZYME JRNL TITL 2 COMPLEXED WITH A DNA SUBSTRATE: STRUCTURAL BASIS FOR DAMAGED JRNL TITL 3 DNA RECOGNITION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 83 773 1995 JRNL REFN ISSN 0092-8674 JRNL PMID 8521494 JRNL DOI 10.1016/0092-8674(95)90190-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.MORIKAWA,M.ARIYOSHI,D.G.VASSYLYEV,O.MATSUMOTO, REMARK 1 AUTH 2 K.KATAYANAGI,E.OHTSUKA REMARK 1 TITL CRYSTAL STRUCTURE OF A PYRIMIDINE DIMER-SPECIFIC EXCISION REMARK 1 TITL 2 REPAIR ENZYME FROM BACTERIOPHAGE T4: REFINEMENT AT 1.45 REMARK 1 TITL 3 ANGSTROMS AND X-RAY ANALYSIS OF THE THREE ACTIVE SITE REMARK 1 TITL 4 MUTANTS REMARK 1 REF J.MOL.BIOL. V. 249 360 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.MORIKAWA REMARK 1 TITL DNA REPAIR ENZYMES REMARK 1 REF CURR.OPIN.STRUCT.BIOL. V. 3 17 1993 REMARK 1 REFN ISSN 0959-440X REMARK 1 REFERENCE 3 REMARK 1 AUTH T.DOI,A.RECKTENWALD,Y.KARAKI,M.KIKUCHI,K.MORIKAWA,M.IKEHARA, REMARK 1 AUTH 2 T.INAOKA,N.HORI,E.OHTSUKA REMARK 1 TITL ROLE OF THE BASIC AMINO ACID CLUSTER AND GLU-23 IN REMARK 1 TITL 2 PYRIMIDINE DIMER GLYCOSYLASE ACTIVITY OF T4 ENDONUCLEASE V REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 89 9420 1992 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH K.MORIKAWA,O.MATSUMOTO,M.TSUJIMOTO,K.KATAYANAGI,M.ARIYOSHI, REMARK 1 AUTH 2 T.DOI,M.IKEHARA,T.INAOKA,E.OHTSUKA REMARK 1 TITL X-RAY STRUCTURE OF T4 ENDONUCLEASE V: AN EXCISION REPAIR REMARK 1 TITL 2 ENZYME SPECIFIC FOR A PYRIMIDINE DIMER REMARK 1 REF SCIENCE V. 256 523 1992 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 5 REMARK 1 AUTH K.MORIKAWA,M.TSUJIMOTO,M.IKEHARA,T.INAOKA,E.OHTSUKA REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC STUDY OF PYRIMIDINE REMARK 1 TITL 2 DIMER-SPECIFIC EXCISION REPAIR ENZYME FROM BACTERIOPHAGE T4 REMARK 1 REF J.MOL.BIOL. V. 202 683 1988 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 72.0 REMARK 3 NUMBER OF REFLECTIONS : 5447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1129 REMARK 3 NUCLEIC ACID ATOMS : 527 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000177008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-94 REMARK 200 TEMPERATURE (KELVIN) : 293.00 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE DIP100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ELMS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 72.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.18667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 12.09333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.14000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.04667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.23333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA B 201 C3' DA B 201 C2' -0.051 REMARK 500 DG B 206 C3' DG B 206 C2' -0.075 REMARK 500 DG B 206 O3' DG B 206 C3' -0.037 REMARK 500 DT B 207 O3' DT B 207 C3' -0.039 REMARK 500 DT B 207 C4 DT B 207 C5 0.100 REMARK 500 DT B 207 C5 DT B 207 C6 0.214 REMARK 500 DT B 207 C6 DT B 207 N1 0.082 REMARK 500 DT B 207 C5 DT B 207 C7 0.043 REMARK 500 DT B 208 P DT B 208 O5' -0.061 REMARK 500 DT B 208 C4 DT B 208 C5 0.078 REMARK 500 DT B 208 C5 DT B 208 C6 0.230 REMARK 500 DT B 208 C6 DT B 208 N1 0.096 REMARK 500 DT B 208 O3' DG B 209 P -0.074 REMARK 500 DG B 209 O3' DG B 209 C3' -0.036 REMARK 500 DG B 209 O3' DC B 210 P -0.075 REMARK 500 DT C 214 N1 DT C 214 C2 0.057 REMARK 500 DA C 221 C5' DA C 221 C4' 0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA B 201 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT B 202 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC B 203 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC B 205 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 206 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 207 C5' - C4' - O4' ANGL. DEV. = 9.2 DEGREES REMARK 500 DT B 207 O4' - C1' - N1 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT B 207 C6 - N1 - C2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT B 207 C5 - C6 - N1 ANGL. DEV. = -7.5 DEGREES REMARK 500 DT B 207 C4 - C5 - C7 ANGL. DEV. = -10.4 DEGREES REMARK 500 DT B 207 C6 - C5 - C7 ANGL. DEV. = -9.5 DEGREES REMARK 500 DT B 208 O4' - C4' - C3' ANGL. DEV. = 3.6 DEGREES REMARK 500 DT B 208 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT B 208 C6 - N1 - C2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 208 C5 - C6 - N1 ANGL. DEV. = -8.6 DEGREES REMARK 500 DT B 208 C4 - C5 - C7 ANGL. DEV. = -10.1 DEGREES REMARK 500 DT B 208 C6 - C5 - C7 ANGL. DEV. = -9.4 DEGREES REMARK 500 DT B 208 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC B 212 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT B 213 C6 - C5 - C7 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT C 214 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG C 216 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC C 217 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 220 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 220 C3' - O3' - P ANGL. DEV. = -9.4 DEGREES REMARK 500 DA C 221 O4' - C4' - C3' ANGL. DEV. = 7.1 DEGREES REMARK 500 DA C 221 C4' - C3' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG C 223 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 224 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 225 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 25 -9.13 -56.73 REMARK 500 ASN A 84 80.07 -61.99 REMARK 500 ARG A 125 69.68 -163.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT B 207 0.18 SIDE CHAIN REMARK 500 DT B 208 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1VAS A 2 138 UNP P04418 END5_BPT4 2 138 DBREF 1VAS B 201 213 PDB 1VAS 1VAS 201 213 DBREF 1VAS C 214 226 PDB 1VAS 1VAS 214 226 SEQADV 1VAS GLN A 23 UNP P04418 GLU 23 ENGINEERED MUTATION SEQRES 1 B 13 DA DT DC DG DC DG DT DT DG DC DG DC DT SEQRES 1 C 13 DT DA DG DC DG DC DA DA DC DG DC DG DA SEQRES 1 A 137 THR ARG ILE ASN LEU THR LEU VAL SER GLU LEU ALA ASP SEQRES 2 A 137 GLN HIS LEU MET ALA GLU TYR ARG GLN LEU PRO ARG VAL SEQRES 3 A 137 PHE GLY ALA VAL ARG LYS HIS VAL ALA ASN GLY LYS ARG SEQRES 4 A 137 VAL ARG ASP PHE LYS ILE SER PRO THR PHE ILE LEU GLY SEQRES 5 A 137 ALA GLY HIS VAL THR PHE PHE TYR ASP LYS LEU GLU PHE SEQRES 6 A 137 LEU ARG LYS ARG GLN ILE GLU LEU ILE ALA GLU CYS LEU SEQRES 7 A 137 LYS ARG GLY PHE ASN ILE LYS ASP THR THR VAL GLN ASP SEQRES 8 A 137 ILE SER ASP ILE PRO GLN GLU PHE ARG GLY ASP TYR ILE SEQRES 9 A 137 PRO HIS GLU ALA SER ILE ALA ILE SER GLN ALA ARG LEU SEQRES 10 A 137 ASP GLU LYS ILE ALA GLN ARG PRO THR TRP TYR LYS TYR SEQRES 11 A 137 TYR GLY LYS ALA ILE TYR ALA FORMUL 4 HOH *143(H2 O) HELIX 1 1 VAL A 9 GLU A 11 5 3 HELIX 2 2 ASP A 14 ALA A 36 1 23 HELIX 3 3 VAL A 41 ASP A 43 5 3 HELIX 4 4 HIS A 56 ASP A 62 1 7 HELIX 5 5 LEU A 64 LYS A 80 1 17 HELIX 6 6 GLN A 98 PHE A 100 5 3 HELIX 7 7 GLU A 108 ARG A 125 1 18 LINK C5 DT B 207 C5 DT B 208 1555 1555 1.58 LINK C6 DT B 207 C6 DT B 208 1555 1555 1.61 CRYST1 118.820 118.820 36.280 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008416 0.004859 0.000000 0.00000 SCALE2 0.000000 0.009718 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027563 0.00000