PDB Short entry for 1VGH
HEADER    GROWTH FACTOR                           17-DEC-97   1VGH              
TITLE     HEPARIN-BINDING DOMAIN FROM VASCULAR ENDOTHELIAL GROWTH FACTOR, NMR,  
TITLE    2 20 STRUCTURES                                                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR-165;                    
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: HEPARIN-BINDING DOMAIN;                                    
COMPND   5 SYNONYM: VEGF-165;                                                   
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    HEPARIN-BINDING, ANGIOGENESIS, GROWTH FACTOR                          
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    W.J.FAIRBROTHER,M.A.CHAMPE,H.W.CHRISTINGER,B.A.KEYT,M.A.STAROVASNIK   
REVDAT   3   02-MAR-22 1VGH    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1VGH    1       VERSN                                    
REVDAT   1   08-APR-98 1VGH    0                                                
JRNL        AUTH   W.J.FAIRBROTHER,M.A.CHAMPE,H.W.CHRISTINGER,B.A.KEYT,         
JRNL        AUTH 2 M.A.STAROVASNIK                                              
JRNL        TITL   SOLUTION STRUCTURE OF THE HEPARIN-BINDING DOMAIN OF VASCULAR 
JRNL        TITL 2 ENDOTHELIAL GROWTH FACTOR.                                   
JRNL        REF    STRUCTURE                     V.   6   637 1998              
JRNL        REFN                   ISSN 0969-2126                               
JRNL        PMID   9634701                                                      
JRNL        DOI    10.1016/S0969-2126(98)00065-3                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : DISCOVER                                             
REMARK   3   AUTHORS     : MOLECULAR SIMULATIONS INC.                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE    
REMARK   3  JRNL CITATION ABOVE.                                                
REMARK   4                                                                      
REMARK   4 1VGH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 100 THE DEPOSITION ID IS D_1000177033.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 5.5                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : NULL                               
REMARK 210  SAMPLE CONTENTS                : NULL                               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2QF-COSY; TOCSY (70 AND 100 MS);   
REMARK 210                                   NOESY(50; AND 200 MS); 15N-HSQC;   
REMARK 210                                   15N-TOCSY-HSQC(30 AND 70 MS);      
REMARK 210                                   15N-NOESY-HSQC(120 MS); 15N-       
REMARK 210                                   ROESY-HSQC(40 MS); HNHA; HNHB      
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AMX500                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : DGII, DISCOVER                     
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY/ SIMULATED       
REMARK 210                                   ANNEALING/RESTRAINED MOLECULAR     
REMARK 210                                   DYNAMICS                           
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 50                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : LOWEST RESIDUAL RESTRAINT          
REMARK 210                                   VIOLATION ENERGIES                 
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 GLU A  12     -102.86     61.21                                   
REMARK 500  1 ARG A  13      -47.01   -150.22                                   
REMARK 500  2 GLN A   3       78.07     60.03                                   
REMARK 500  2 GLU A  12      -33.00     78.34                                   
REMARK 500  2 ARG A  13      -81.90    -89.23                                   
REMARK 500  2 ARG A  14       99.86   -165.43                                   
REMARK 500  2 HIS A  16      -51.54   -146.01                                   
REMARK 500  2 ARG A  54       87.64    179.10                                   
REMARK 500  3 SER A  11      -79.03    -85.32                                   
REMARK 500  3 GLU A  12     -150.22   -155.04                                   
REMARK 500  3 ARG A  14       43.27    -94.95                                   
REMARK 500  3 LYS A  15       21.76    -76.82                                   
REMARK 500  3 ARG A  54      -55.89   -176.01                                   
REMARK 500  4 HIS A  16      -41.45   -176.83                                   
REMARK 500  4 CYS A  25        1.16     87.31                                   
REMARK 500  4 ARG A  54      -60.71   -172.51                                   
REMARK 500  5 GLU A   4       39.91    -83.54                                   
REMARK 500  5 ARG A  13      -66.73   -149.11                                   
REMARK 500  6 GLN A   3      -70.63    -73.01                                   
REMARK 500  6 ARG A  13      -60.55   -138.21                                   
REMARK 500  6 LYS A  15       40.39    -90.87                                   
REMARK 500  6 LEU A  17       39.60    -84.83                                   
REMARK 500  7 GLU A  12      -82.45    -67.41                                   
REMARK 500  7 ARG A  13      -74.02   -151.14                                   
REMARK 500  7 ARG A  54       77.97   -171.85                                   
REMARK 500  8 GLN A   3       49.60    -82.05                                   
REMARK 500  8 SER A  11      -81.81    -76.41                                   
REMARK 500  8 GLU A  12      -68.35   -145.67                                   
REMARK 500  8 ARG A  14      120.17   -171.16                                   
REMARK 500  8 HIS A  16      -54.08   -129.36                                   
REMARK 500  8 LEU A  17       38.54    -81.41                                   
REMARK 500  8 PRO A  53      112.66    -37.81                                   
REMARK 500  8 ARG A  54      -46.98   -152.70                                   
REMARK 500  9 PRO A   6     -111.41    -78.00                                   
REMARK 500  9 SER A  11      -73.81    -74.90                                   
REMARK 500  9 GLU A  12      -68.97   -144.59                                   
REMARK 500  9 ARG A  13      -76.43   -141.73                                   
REMARK 500  9 HIS A  16      -44.25   -144.28                                   
REMARK 500  9 PRO A  53       82.21    -54.09                                   
REMARK 500 10 CYS A  10      -60.87    -90.21                                   
REMARK 500 10 GLU A  12      -58.85   -148.96                                   
REMARK 500 10 ARG A  13      -64.81   -151.69                                   
REMARK 500 10 LEU A  17       50.45    -91.64                                   
REMARK 500 10 ARG A  54      -41.77    178.96                                   
REMARK 500 11 ARG A  13     -134.17   -141.53                                   
REMARK 500 11 LEU A  17       33.60    -86.19                                   
REMARK 500 11 ARG A  54      -46.49    179.62                                   
REMARK 500 12 ARG A   2      -62.26    137.76                                   
REMARK 500 12 GLN A   3       73.41     56.52                                   
REMARK 500 12 SER A  11     -148.90    -88.83                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      92 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1VGH A    1    55  UNP    P15692   VEGFA_HUMAN    161    215             
SEQADV 1VGH ALA A    1  UNP  P15692    LYS   161 VARIANT                        
SEQADV 1VGH ARG A    2  UNP  P15692    SER   162 VARIANT                        
SEQADV 1VGH GLN A    3  UNP  P15692    TRP   163 VARIANT                        
SEQADV 1VGH GLU A    4  UNP  P15692    SER   164 VARIANT                        
SEQADV 1VGH ASN A    5  UNP  P15692    VAL   165 VARIANT                        
SEQRES   1 A   55  ALA ARG GLN GLU ASN PRO CYS GLY PRO CYS SER GLU ARG          
SEQRES   2 A   55  ARG LYS HIS LEU PHE VAL GLN ASP PRO GLN THR CYS LYS          
SEQRES   3 A   55  CYS SER CYS LYS ASN THR ASP SER ARG CYS LYS ALA ARG          
SEQRES   4 A   55  GLN LEU GLU LEU ASN GLU ARG THR CYS ARG CYS ASP LYS          
SEQRES   5 A   55  PRO ARG ARG                                                  
HELIX    1   1 ASP A   33  ALA A   38  1                                   6    
SHEET    1   A 2 PHE A  18  GLN A  20  0                                        
SHEET    2   A 2 CYS A  27  CYS A  29 -1  N  SER A  28   O  VAL A  19           
SHEET    1   B 2 GLU A  42  ASN A  44  0                                        
SHEET    2   B 2 ARG A  49  ASP A  51 -1  N  ASP A  51   O  GLU A  42           
SSBOND   1 CYS A    7    CYS A   25                          1555   1555  2.05  
SSBOND   2 CYS A   10    CYS A   27                          1555   1555  2.05  
SSBOND   3 CYS A   29    CYS A   48                          1555   1555  2.04  
SSBOND   4 CYS A   36    CYS A   50                          1555   1555  2.05  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000