PDB Short entry for 1VIH HEADER RIBONUCLEOPROTEIN 29-NOV-95 1VIH TITLE NMR STUDY OF VIGILIN, REPEAT 6, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIGILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH6, RESIDUES 432 TO 501; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: HUMAN VIGILIN SIXTH KH REPEAT; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D; SOURCE 11 EXPRESSION_SYSTEM_GENE: HUMAN VIGILIN SIXTH KH REPEAT; SOURCE 12 OTHER_DETAILS: N-TERMINAL 6-HISTIDINE FUSION PROTEIN YES KEYWDS RNA-BINDING PROTEIN, RIBONUCLEOPROTEIN EXPDTA SOLUTION NMR AUTHOR G.MUSCO,G.STIER,C.JOSEPH,M.A.C.MORELLI,M.NILGES,T.J.GIBSON,A.PASTORE REVDAT 3 02-MAR-22 1VIH 1 REMARK REVDAT 2 24-FEB-09 1VIH 1 VERSN REVDAT 1 03-APR-96 1VIH 0 JRNL AUTH G.MUSCO,G.STIER,C.JOSEPH,M.A.CASTIGLIONE MORELLI,M.NILGES, JRNL AUTH 2 T.J.GIBSON,A.PASTORE JRNL TITL THREE-DIMENSIONAL STRUCTURE AND STABILITY OF THE KH DOMAIN: JRNL TITL 2 MOLECULAR INSIGHTS INTO THE FRAGILE X SYNDROME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 237 1996 JRNL REFN ISSN 0092-8674 JRNL PMID 8612276 JRNL DOI 10.1016/S0092-8674(00)81100-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.C.MORELLI,G.STIER,T.J.GIBSON,C.JOSEPH,G.MUSCO,A.PASTORE, REMARK 1 AUTH 2 G.TRAVE REMARK 1 TITL THE KH MODULE HAS AN ALFA(SLASH)BETA FOLD REMARK 1 REF FEBS LETT. V. 358 193 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177044. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 35 H TYR A 39 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -54.55 79.49 REMARK 500 ARG A 8 -158.34 35.99 REMARK 500 VAL A 12 146.84 -173.24 REMARK 500 ASN A 15 98.33 -68.57 REMARK 500 ASP A 17 -65.65 -149.56 REMARK 500 HIS A 18 -178.55 -50.65 REMARK 500 HIS A 21 -71.73 -45.60 REMARK 500 LYS A 27 -70.80 -50.94 REMARK 500 ALA A 30 -48.31 -144.63 REMARK 500 ASP A 48 93.82 42.96 REMARK 500 GLU A 50 -71.06 -134.09 REMARK 500 LYS A 51 -73.79 -87.63 REMARK 500 LEU A 54 111.55 -165.66 REMARK 500 ASP A 60 -67.06 -149.65 REMARK 500 GLU A 73 -67.52 -101.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 8 0.21 SIDE CHAIN REMARK 500 ARG A 22 0.26 SIDE CHAIN REMARK 500 ARG A 34 0.30 SIDE CHAIN REMARK 500 ARG A 44 0.31 SIDE CHAIN REMARK 500 ARG A 56 0.28 SIDE CHAIN REMARK 500 ARG A 69 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VIG RELATED DB: PDB DBREF 1VIH A 6 76 UNP Q00341 VIGLN_HUMAN 432 502 SEQRES 1 A 71 ILE ASN ARG MET ASP TYR VAL GLU ILE ASN ILE ASP HIS SEQRES 2 A 71 LYS PHE HIS ARG HIS LEU ILE GLY LYS SER GLY ALA ASN SEQRES 3 A 71 ILE ASN ARG ILE LYS ASP GLN TYR LYS VAL SER VAL ARG SEQRES 4 A 71 ILE PRO PRO ASP SER GLU LYS SER ASN LEU ILE ARG ILE SEQRES 5 A 71 GLU GLY ASP PRO GLN GLY VAL GLN GLN ALA LYS ARG GLU SEQRES 6 A 71 LEU LEU GLU LEU ALA SER HELIX 1 1 HIS A 21 ILE A 25 1 5 HELIX 2 2 ASN A 31 TYR A 39 1 9 HELIX 3 3 GLN A 62 LEU A 74 1 13 SHEET 1 A 3 ASP A 10 ILE A 16 0 SHEET 2 A 3 ASN A 53 GLY A 59 -1 N GLY A 59 O ASP A 10 SHEET 3 A 3 SER A 42 ARG A 44 -1 N ARG A 44 O ARG A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000