PDB Short entry for 1VKC HEADER TRANSFERASE 11-MAY-04 1VKC TITLE PUTATIVE ACETYL TRANSFERASE FROM PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ACETYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 OTHER_DETAILS: THE PROTEIN WAS CLONED, EXPRESSED AND PURIFIED BY THE SOURCE 7 SECSG PYROCOCCUS PROTEIN PRODUCTION GROUP (M.W.W.ADAMS, SOURCE 8 P.S.BRERETON, M.IZUMI, F.E.JENNEY JR., H.- S.LEE, F.L. POOLE II, SOURCE 9 C.SHAH, F.SUGAR) UNDER THE DIRECTION OF M.W.W.ADAMS. KEYWDS STRUCTURAL GENOMICS, ACETYL TRANSFERASE, PYROCOCCUS FURIOSUS, KEYWDS 2 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HABEL,Z.-J.LIU,W.TEMPEL,J.P.ROSE,P.S.BRERETON,M.IZUMI,F.E.JENNEY AUTHOR 2 JR,F.L.POOLE II,C.SHAH,F.J.SUGAR,M.W.W.ADAMS,D.C.RICHARDSON, AUTHOR 3 J.S.RICHARDSON,B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL AUTHOR 4 GENOMICS (SECSG) REVDAT 6 27-DEC-23 1VKC 1 REMARK SEQADV REVDAT 5 04-OCT-17 1VKC 1 REMARK REVDAT 4 13-JUL-11 1VKC 1 VERSN REVDAT 3 24-FEB-09 1VKC 1 VERSN REVDAT 2 01-FEB-05 1VKC 1 REMARK REVDAT 1 14-DEC-04 1VKC 0 JRNL AUTH J.E.HABEL,Z.-J.LIU,W.TEMPEL,J.P.ROSE,P.S.BRERETON,M.IZUMI, JRNL AUTH 2 F.E.JENNEY JR,F.L.POOLE II,C.SHAH,F.J.SUGAR,M.W.W.ADAMS, JRNL AUTH 3 D.C.RICHARDSON,J.S.RICHARDSON,B.-C.WANG, JRNL AUTH 4 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL PUTATIVE ACETYL TRANSFERASE FROM PYROCOCCUS FURIOSUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1464 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2394 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.55000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2475 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2296 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3357 ; 1.078 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5272 ; 0.705 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 5.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;31.490 ;23.097 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;12.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2728 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 471 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2156 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1211 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1409 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 73 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 129 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.096 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1489 ; 2.026 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 610 ; 0.542 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2389 ; 3.084 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1117 ; 2.130 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 968 ; 3.127 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000001946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97702 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE 2.03, RESOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% (V/V) MPD, 100MM MAGNESIUM REMARK 280 CHLORIDE, 100MM SODIUM CITRATE, PH 5.9, MICRO BATCH, TEMPERATURE REMARK 280 295K, MICROBATCH REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.69350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE BIOLOGICAL UNIT IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -1.33661 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 49.39592 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 16 CE NZ REMARK 470 LYS A 17 NZ REMARK 470 ARG A 28 CD NE CZ NH1 NH2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 GLN A 50 CG CD OE1 NE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 107 CD CE NZ REMARK 470 LYS A 118 CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LYS A 140 CD CE NZ REMARK 470 ARG A 142 NE CZ NH1 NH2 REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 GLU B 14 CD OE1 OE2 REMARK 470 ARG B 39 CZ NH1 NH2 REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 GLU B 52 CD OE1 OE2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ARG B 62 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 82 CD CE NZ REMARK 470 GLU B 110 CD OE1 OE2 REMARK 470 LYS B 118 NZ REMARK 470 LYS B 132 CD CE NZ REMARK 470 GLU B 136 CG CD OE1 OE2 REMARK 470 LYS B 140 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 127 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-35386-001 RELATED DB: TARGETDB DBREF 1VKC A 2 150 UNP Q8U4Q2 Q8U4Q2_PYRFU 2 150 DBREF 1VKC B 2 150 UNP Q8U4Q2 Q8U4Q2_PYRFU 2 150 SEQADV 1VKC ALA A -7 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS A -6 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS A -5 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS A -4 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS A -3 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS A -2 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS A -1 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC GLY A 0 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC SER A 1 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC ALA B -7 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS B -6 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS B -5 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS B -4 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS B -3 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS B -2 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC HIS B -1 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC GLY B 0 UNP Q8U4Q2 EXPRESSION TAG SEQADV 1VKC SER B 1 UNP Q8U4Q2 EXPRESSION TAG SEQRES 1 A 158 ALA HIS HIS HIS HIS HIS HIS GLY SER GLU TYR THR ILE SEQRES 2 A 158 VAL ASP GLY GLU GLU TYR ILE GLU GLU ILE LYS LYS LEU SEQRES 3 A 158 ASP ARG GLU ILE SER TYR SER PHE VAL ARG PHE PRO ILE SEQRES 4 A 158 SER TYR GLU GLU TYR GLU GLU ARG HIS GLU GLU LEU PHE SEQRES 5 A 158 GLU SER LEU LEU SER GLN GLY GLU HIS LYS PHE PHE VAL SEQRES 6 A 158 ALA LEU ASN GLU ARG SER GLU LEU LEU GLY HIS VAL TRP SEQRES 7 A 158 ILE CYS ILE THR LEU ASP THR VAL ASP TYR VAL LYS ILE SEQRES 8 A 158 ALA TYR ILE TYR ASP ILE GLU VAL VAL LYS TRP ALA ARG SEQRES 9 A 158 GLY LEU GLY ILE GLY SER ALA LEU LEU ARG LYS ALA GLU SEQRES 10 A 158 GLU TRP ALA LYS GLU ARG GLY ALA LYS LYS ILE VAL LEU SEQRES 11 A 158 ARG VAL GLU ILE ASP ASN PRO ALA VAL LYS TRP TYR GLU SEQRES 12 A 158 GLU ARG GLY TYR LYS ALA ARG ALA LEU ILE MET GLU LYS SEQRES 13 A 158 PRO ILE SEQRES 1 B 158 ALA HIS HIS HIS HIS HIS HIS GLY SER GLU TYR THR ILE SEQRES 2 B 158 VAL ASP GLY GLU GLU TYR ILE GLU GLU ILE LYS LYS LEU SEQRES 3 B 158 ASP ARG GLU ILE SER TYR SER PHE VAL ARG PHE PRO ILE SEQRES 4 B 158 SER TYR GLU GLU TYR GLU GLU ARG HIS GLU GLU LEU PHE SEQRES 5 B 158 GLU SER LEU LEU SER GLN GLY GLU HIS LYS PHE PHE VAL SEQRES 6 B 158 ALA LEU ASN GLU ARG SER GLU LEU LEU GLY HIS VAL TRP SEQRES 7 B 158 ILE CYS ILE THR LEU ASP THR VAL ASP TYR VAL LYS ILE SEQRES 8 B 158 ALA TYR ILE TYR ASP ILE GLU VAL VAL LYS TRP ALA ARG SEQRES 9 B 158 GLY LEU GLY ILE GLY SER ALA LEU LEU ARG LYS ALA GLU SEQRES 10 B 158 GLU TRP ALA LYS GLU ARG GLY ALA LYS LYS ILE VAL LEU SEQRES 11 B 158 ARG VAL GLU ILE ASP ASN PRO ALA VAL LYS TRP TYR GLU SEQRES 12 B 158 GLU ARG GLY TYR LYS ALA ARG ALA LEU ILE MET GLU LYS SEQRES 13 B 158 PRO ILE HET IOD A 201 1 HET IOD A 202 1 HET IOD A 204 1 HET IOD A 207 1 HET IOD A 208 1 HET IOD A 209 1 HET IOD A 212 1 HET IOD A 213 1 HET IOD B 203 1 HET IOD B 205 1 HET IOD B 206 1 HET IOD B 210 1 HET IOD B 211 1 HETNAM IOD IODIDE ION FORMUL 3 IOD 13(I 1-) FORMUL 16 HOH *54(H2 O) HELIX 1 1 TYR A 11 TYR A 24 1 14 HELIX 2 2 SER A 25 VAL A 27 5 3 HELIX 3 3 SER A 32 GLN A 50 1 19 HELIX 4 4 LYS A 93 ARG A 96 5 4 HELIX 5 5 GLY A 99 ARG A 115 1 17 HELIX 6 6 PRO A 129 ARG A 137 1 9 HELIX 7 7 TYR B 11 TYR B 24 1 14 HELIX 8 8 SER B 25 VAL B 27 5 3 HELIX 9 9 SER B 32 GLN B 50 1 19 HELIX 10 10 LYS B 93 ARG B 96 5 4 HELIX 11 11 GLY B 99 ARG B 115 1 17 HELIX 12 12 PRO B 129 ARG B 137 1 9 SHEET 1 A 5 TYR A 3 ASP A 7 0 SHEET 2 A 5 GLU A 52 ASN A 60 -1 O LEU A 59 N THR A 4 SHEET 3 A 5 LEU A 65 LEU A 75 -1 O LEU A 66 N ALA A 58 SHEET 4 A 5 LYS A 82 VAL A 91 -1 O TYR A 85 N CYS A 72 SHEET 5 A 5 ILE A 120 LEU A 122 1 O VAL A 121 N ALA A 84 SHEET 1 B 5 THR B 4 ASP B 7 0 SHEET 2 B 5 GLU B 52 LEU B 59 -1 O LEU B 59 N THR B 4 SHEET 3 B 5 LEU B 65 LEU B 75 -1 O LEU B 66 N ALA B 58 SHEET 4 B 5 LYS B 82 VAL B 91 -1 O TYR B 85 N CYS B 72 SHEET 5 B 5 ILE B 120 LEU B 122 1 O VAL B 121 N ILE B 86 SITE 1 AC1 2 TYR A 24 LYS B 93 SITE 1 AC2 2 LYS A 93 TYR B 24 SITE 1 AC3 1 LEU B 65 SITE 1 AC4 2 GLU A 14 LEU A 65 SITE 1 AC5 1 TYR B 85 SITE 1 AC6 1 ARG B 20 SITE 1 AC7 1 TYR A 85 SITE 1 AC8 1 LYS A 82 SITE 1 AC9 1 VAL A 91 SITE 1 BC1 1 LYS B 119 SITE 1 BC2 2 LYS A 119 HOH B 342 CRYST1 46.919 67.387 49.414 90.00 91.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021313 0.000000 0.000577 0.00000 SCALE2 0.000000 0.014840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020245 0.00000