PDB Short entry for 1VL4 HEADER GENE REGULATION 09-JUL-04 1VL4 TITLE CRYSTAL STRUCTURE OF A PUTATIVE MODULATOR OF A DNA GYRASE (TM0727) TITLE 2 FROM THERMOTOGA MARITIMA MSB8 AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PMBA-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 GENE: TM0727; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PMBA-RELATED PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, GENE KEYWDS 3 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 25-JAN-23 1VL4 1 SEQADV REVDAT 8 04-OCT-17 1VL4 1 REMARK REVDAT 7 13-JUL-11 1VL4 1 VERSN REVDAT 6 28-JUL-10 1VL4 1 HEADER TITLE KEYWDS REVDAT 5 24-FEB-09 1VL4 1 VERSN REVDAT 4 03-OCT-06 1VL4 1 JRNL REVDAT 3 28-MAR-06 1VL4 1 JRNL REVDAT 2 18-JAN-05 1VL4 1 AUTHOR KEYWDS REMARK REVDAT 1 21-SEP-04 1VL4 0 JRNL AUTH C.RIFE,R.SCHWARZENBACHER,D.MCMULLAN,P.ABDUBEK,E.AMBING, JRNL AUTH 2 H.AXELROD,T.BIORAC,J.M.CANAVES,H.J.CHIU,A.M.DEACON, JRNL AUTH 3 M.DIDONATO,M.A.ELSLIGER,A.GODZIK,C.GRITTINI,S.K.GRZECHNIK, JRNL AUTH 4 J.HALE,E.HAMPTON,G.W.HAN,J.HAUGEN,M.HORNSBY,L.JAROSZEWSKI, JRNL AUTH 5 H.E.KLOCK,E.KOESEMA,A.KREUSCH,P.KUHN,S.A.LESLEY,M.D.MILLER, JRNL AUTH 6 K.MOY,E.NIGOGHOSSIAN,J.PAULSEN,K.QUIJANO,R.REYES,E.SIMS, JRNL AUTH 7 G.SPRAGGON,R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ, JRNL AUTH 8 J.VINCENT,A.WHITE,G.WOLF,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 9 I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE MODULATOR OF DNA GYRASE JRNL TITL 2 (PMBA) FROM THERMOTOGA MARITIMA AT 1.95 A RESOLUTION REVEALS JRNL TITL 3 A NEW FOLD. JRNL REF PROTEINS V. 61 444 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16104019 JRNL DOI 10.1002/PROT.20468 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 67979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2909 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6596 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.844 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6810 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6274 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9203 ; 1.669 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14658 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 876 ; 6.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;36.814 ;25.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1239 ;14.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1040 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7609 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1286 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1265 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6198 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3240 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4219 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 388 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4454 ; 2.706 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1772 ; 0.775 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6967 ; 3.624 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2638 ; 6.278 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2236 ; 8.817 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 432 4 REMARK 3 1 B 1 B 432 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 6152 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 6152 ; 1.00 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6213 -1.8741 17.9305 REMARK 3 T TENSOR REMARK 3 T11: -0.1151 T22: -0.0441 REMARK 3 T33: -0.1554 T12: -0.0297 REMARK 3 T13: 0.0116 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.0218 L22: 1.2587 REMARK 3 L33: 1.2633 L12: 0.4246 REMARK 3 L13: 0.6423 L23: 0.2543 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: 0.2852 S13: 0.0618 REMARK 3 S21: -0.1102 S22: 0.0442 S23: -0.0871 REMARK 3 S31: -0.0589 S32: 0.3252 S33: 0.0558 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 433 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7431 4.8422 -14.0058 REMARK 3 T TENSOR REMARK 3 T11: -0.1200 T22: -0.1540 REMARK 3 T33: -0.1651 T12: 0.0107 REMARK 3 T13: -0.0180 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.3396 L22: 0.8672 REMARK 3 L33: 0.6075 L12: -0.4969 REMARK 3 L13: -0.3520 L23: 0.1041 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.1478 S13: -0.0200 REMARK 3 S21: 0.0785 S22: 0.0091 S23: -0.0677 REMARK 3 S31: 0.0077 S32: 0.0722 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. THERE IS NO DENSITY PRESENT FOR RESIDUES 87- REMARK 3 90 AND 434-435, SO THEY HAVE NOT BEEN MODELED. 3. THE FOLLOWING REMARK 3 RESIDUES HAVE MISSING ATOMS: A1, A16, A40, A48, A65, A70, A151, REMARK 3 A199, A222, A311, A314, A315, A319, B1, B9, B34, B40, B60, B70, REMARK 3 B86, B110, B125, B199, B216, B311, B315, B340, B348. 4. THE DATA REMARK 3 USED IN THE FINAL REFINEMENT WAS FROM A NATIVE CRYSTAL REMARK 4 REMARK 4 1VL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000001970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-04; 24-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL9-2; BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980078; REMARK 200 0.979264,0.979562,0.898404 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL; FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA FROM A CRYSTAL OF SE-MET SUBSTITUTED PROTEIN WAS USED REMARK 200 FOR THE MAD PHASING EXPERIMENTS AND DATA FROM A CRYSTAL REMARK 200 OF NATIVE PROTEIN WAS USED FOR THE FINAL REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS PH 7, 0.5M (NH4)2SO4, 10% REMARK 280 GLYCEROL, 30% PEG-600 , PH 7.0, VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K. 0.5M (NH4)2SO4, 10% GLYCEROL, 30% REMARK 280 PEG-600, TRIS PH 7, PH 7.0, VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.18350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.31850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.18350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.31850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 87 REMARK 465 SER A 88 REMARK 465 GLU A 89 REMARK 465 GLU A 90 REMARK 465 GLY A 434 REMARK 465 LYS A 435 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ASP B 87 REMARK 465 SER B 88 REMARK 465 GLU B 89 REMARK 465 GLU B 90 REMARK 465 GLY B 434 REMARK 465 LYS B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 N CA CB CG SD CE REMARK 470 LYS A 16 CD CE NZ REMARK 470 LEU A 40 CG CD1 CD2 REMARK 470 LYS A 48 CE NZ REMARK 470 ARG A 65 NE CZ NH1 NH2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 151 CD CE NZ REMARK 470 GLU A 199 CD OE1 OE2 REMARK 470 LYS A 222 CE NZ REMARK 470 LYS A 311 CE NZ REMARK 470 ARG A 314 CD NE CZ NH1 NH2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 GLU A 319 CD OE1 OE2 REMARK 470 MET B 1 N CA CB CG SD CE REMARK 470 ARG B 9 CD NE CZ NH1 NH2 REMARK 470 ARG B 34 NE CZ NH1 NH2 REMARK 470 LEU B 40 CG CD1 CD2 REMARK 470 LYS B 60 CD CE NZ REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 ARG B 110 CZ NH1 NH2 REMARK 470 LYS B 125 CD CE NZ REMARK 470 GLU B 199 CD OE1 OE2 REMARK 470 LYS B 216 CD CE NZ REMARK 470 LYS B 311 CE NZ REMARK 470 LYS B 315 CD CE NZ REMARK 470 GLU B 340 CD OE1 OE2 REMARK 470 LYS B 348 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 177 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 177 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP B 272 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 330 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 351 -44.66 69.38 REMARK 500 SER A 417 -154.65 -119.67 REMARK 500 ASP B 351 -51.73 73.22 REMARK 500 SER B 417 -159.29 -119.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282597 RELATED DB: TARGETDB DBREF 1VL4 A 1 435 UNP Q9WZI6 Q9WZI6_THEMA 1 435 DBREF 1VL4 B 1 435 UNP Q9WZI6 Q9WZI6_THEMA 1 435 SEQADV 1VL4 MET A -11 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 GLY A -10 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 SER A -9 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 ASP A -8 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 LYS A -7 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 ILE A -6 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS A -5 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS A -4 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS A -3 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS A -2 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS A -1 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS A 0 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 MET B -11 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 GLY B -10 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 SER B -9 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 ASP B -8 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 LYS B -7 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 ILE B -6 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS B -5 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS B -4 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS B -3 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS B -2 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS B -1 UNP Q9WZI6 EXPRESSION TAG SEQADV 1VL4 HIS B 0 UNP Q9WZI6 EXPRESSION TAG SEQRES 1 A 447 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 447 THR PHE GLU GLU PHE LYS ASP ARG LEU PHE ALA LEU ALA SEQRES 3 A 447 LYS LYS ASN GLY VAL GLU VAL GLN ILE SER PHE LEU GLU SEQRES 4 A 447 THR ARG GLU PHE SER LEU ARG LEU ALA ASN GLY ASP LEU SEQRES 5 A 447 ASP GLN TYR THR ASP ALA GLY LYS PHE ASN VAL GLU ILE SEQRES 6 A 447 LYS VAL LEU LYS ASP GLY LYS THR GLY THR PHE ARG THR SEQRES 7 A 447 GLN VAL LEU GLU ASN PRO GLU LYS CYS PHE GLU GLU ALA SEQRES 8 A 447 LEU SER ASN LEU GLN VAL LYS ASP SER GLU GLU LYS GLU SEQRES 9 A 447 TYR PHE PHE GLU GLY GLY LYS GLU TYR ARG GLU MET GLU SEQRES 10 A 447 THR TYR VAL GLY ARG PHE GLU LYS LEU SER VAL LYS GLU SEQRES 11 A 447 LYS MET ASP MET ALA LYS LYS ALA HIS GLU SER ALA ALA SEQRES 12 A 447 LYS ASP GLU ARG VAL VAL MET VAL PRO THR VAL MET TYR SEQRES 13 A 447 LYS ASP MET VAL ILE LYS LYS ILE ILE THR ASN THR LEU SEQRES 14 A 447 GLY LEU ASP VAL GLU SER GLN MET ASP GLY GLY PHE LEU SEQRES 15 A 447 PHE ALA MET ALA ILE ALA ARG ASP ALA ASN PRO ARG SER SEQRES 16 A 447 GLY SER TRP TYR GLU LEU ALA ARG THR PRO GLU ASP LEU SEQRES 17 A 447 ASN PRO GLU GLU ILE GLY LYS ARG ALA ALA GLU GLU ALA SEQRES 18 A 447 ILE SER LEU ILE GLY SER LYS THR ILE PRO SER GLY LYS SEQRES 19 A 447 TYR PRO VAL LEU MET ARG ASN THR ALA LEU LEU ASP LEU SEQRES 20 A 447 MET GLU MET PHE ILE PRO MET ILE SER ALA GLU ASN VAL SEQRES 21 A 447 GLN LYS ASN LEU SER PRO LEU LYS GLY LYS LEU GLY GLU SEQRES 22 A 447 GLN VAL GLY ASN PRO ALA VAL SER ILE LYS ASP LEU PRO SEQRES 23 A 447 TYR HIS PRO LYS GLY LEU SER SER THR PRO PHE ASP ASP SEQRES 24 A 447 GLU GLY VAL PRO THR THR GLU LYS PHE VAL LEU GLU ASN SEQRES 25 A 447 GLY VAL LEU LYS THR PHE LEU HIS ASN LEU LYS THR ALA SEQRES 26 A 447 ARG LYS GLU GLY VAL GLU PRO THR GLY ASN GLY PHE VAL SEQRES 27 A 447 GLY GLY ILE ARG PRO VAL ASN LEU MET LEU MET PRO GLY SEQRES 28 A 447 GLU LYS SER PHE GLU GLU LEU LEU LYS GLU MET ASP ARG SEQRES 29 A 447 GLY VAL VAL ILE THR GLU VAL GLU GLY MET HIS ALA GLY SEQRES 30 A 447 ALA ASN SER ILE SER GLY GLU PHE SER LEU PHE ALA LYS SEQRES 31 A 447 GLY TYR TRP VAL GLU ASN GLY GLU ILE ALA HIS GLY VAL SEQRES 32 A 447 GLU ASP ILE THR ILE SER GLY ASN PHE LEU ASP LEU LEU SEQRES 33 A 447 ARG LYS ILE VAL LEU VAL GLY ASN ASP VAL LYS VAL SER SEQRES 34 A 447 GLN HIS THR ILE ALA PRO SER VAL LEU VAL GLU VAL LEU SEQRES 35 A 447 ASP VAL ALA GLY LYS SEQRES 1 B 447 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 447 THR PHE GLU GLU PHE LYS ASP ARG LEU PHE ALA LEU ALA SEQRES 3 B 447 LYS LYS ASN GLY VAL GLU VAL GLN ILE SER PHE LEU GLU SEQRES 4 B 447 THR ARG GLU PHE SER LEU ARG LEU ALA ASN GLY ASP LEU SEQRES 5 B 447 ASP GLN TYR THR ASP ALA GLY LYS PHE ASN VAL GLU ILE SEQRES 6 B 447 LYS VAL LEU LYS ASP GLY LYS THR GLY THR PHE ARG THR SEQRES 7 B 447 GLN VAL LEU GLU ASN PRO GLU LYS CYS PHE GLU GLU ALA SEQRES 8 B 447 LEU SER ASN LEU GLN VAL LYS ASP SER GLU GLU LYS GLU SEQRES 9 B 447 TYR PHE PHE GLU GLY GLY LYS GLU TYR ARG GLU MET GLU SEQRES 10 B 447 THR TYR VAL GLY ARG PHE GLU LYS LEU SER VAL LYS GLU SEQRES 11 B 447 LYS MET ASP MET ALA LYS LYS ALA HIS GLU SER ALA ALA SEQRES 12 B 447 LYS ASP GLU ARG VAL VAL MET VAL PRO THR VAL MET TYR SEQRES 13 B 447 LYS ASP MET VAL ILE LYS LYS ILE ILE THR ASN THR LEU SEQRES 14 B 447 GLY LEU ASP VAL GLU SER GLN MET ASP GLY GLY PHE LEU SEQRES 15 B 447 PHE ALA MET ALA ILE ALA ARG ASP ALA ASN PRO ARG SER SEQRES 16 B 447 GLY SER TRP TYR GLU LEU ALA ARG THR PRO GLU ASP LEU SEQRES 17 B 447 ASN PRO GLU GLU ILE GLY LYS ARG ALA ALA GLU GLU ALA SEQRES 18 B 447 ILE SER LEU ILE GLY SER LYS THR ILE PRO SER GLY LYS SEQRES 19 B 447 TYR PRO VAL LEU MET ARG ASN THR ALA LEU LEU ASP LEU SEQRES 20 B 447 MET GLU MET PHE ILE PRO MET ILE SER ALA GLU ASN VAL SEQRES 21 B 447 GLN LYS ASN LEU SER PRO LEU LYS GLY LYS LEU GLY GLU SEQRES 22 B 447 GLN VAL GLY ASN PRO ALA VAL SER ILE LYS ASP LEU PRO SEQRES 23 B 447 TYR HIS PRO LYS GLY LEU SER SER THR PRO PHE ASP ASP SEQRES 24 B 447 GLU GLY VAL PRO THR THR GLU LYS PHE VAL LEU GLU ASN SEQRES 25 B 447 GLY VAL LEU LYS THR PHE LEU HIS ASN LEU LYS THR ALA SEQRES 26 B 447 ARG LYS GLU GLY VAL GLU PRO THR GLY ASN GLY PHE VAL SEQRES 27 B 447 GLY GLY ILE ARG PRO VAL ASN LEU MET LEU MET PRO GLY SEQRES 28 B 447 GLU LYS SER PHE GLU GLU LEU LEU LYS GLU MET ASP ARG SEQRES 29 B 447 GLY VAL VAL ILE THR GLU VAL GLU GLY MET HIS ALA GLY SEQRES 30 B 447 ALA ASN SER ILE SER GLY GLU PHE SER LEU PHE ALA LYS SEQRES 31 B 447 GLY TYR TRP VAL GLU ASN GLY GLU ILE ALA HIS GLY VAL SEQRES 32 B 447 GLU ASP ILE THR ILE SER GLY ASN PHE LEU ASP LEU LEU SEQRES 33 B 447 ARG LYS ILE VAL LEU VAL GLY ASN ASP VAL LYS VAL SER SEQRES 34 B 447 GLN HIS THR ILE ALA PRO SER VAL LEU VAL GLU VAL LEU SEQRES 35 B 447 ASP VAL ALA GLY LYS FORMUL 3 HOH *493(H2 O) HELIX 1 1 THR A 2 GLY A 18 1 17 HELIX 2 2 ASN A 71 ASN A 82 1 12 HELIX 3 3 LEU A 83 VAL A 85 5 3 HELIX 4 4 ARG A 110 LEU A 114 5 5 HELIX 5 5 SER A 115 LYS A 132 1 18 HELIX 6 6 THR A 192 LEU A 196 5 5 HELIX 7 7 ASN A 197 LEU A 212 1 16 HELIX 8 8 ARG A 228 MET A 236 1 9 HELIX 9 9 PHE A 239 SER A 244 1 6 HELIX 10 10 SER A 244 LYS A 250 1 7 HELIX 11 11 ASN A 309 GLY A 317 1 9 HELIX 12 12 SER A 342 ASP A 351 1 10 HELIX 13 13 GLY A 361 ALA A 366 1 6 HELIX 14 14 PHE A 400 LYS A 406 1 7 HELIX 15 15 THR B 2 GLY B 18 1 17 HELIX 16 16 ASN B 71 ASN B 82 1 12 HELIX 17 17 LEU B 83 VAL B 85 5 3 HELIX 18 18 ARG B 110 LEU B 114 5 5 HELIX 19 19 SER B 115 LYS B 132 1 18 HELIX 20 20 THR B 192 LEU B 196 5 5 HELIX 21 21 ASN B 197 SER B 211 1 15 HELIX 22 22 ARG B 228 MET B 236 1 9 HELIX 23 23 MET B 238 SER B 244 1 7 HELIX 24 24 SER B 244 LYS B 250 1 7 HELIX 25 25 ASN B 309 GLY B 317 1 9 HELIX 26 26 SER B 342 ASP B 351 1 10 HELIX 27 27 GLY B 361 ALA B 366 1 6 HELIX 28 28 PHE B 400 LYS B 406 1 7 SHEET 1 A 6 LYS A 60 THR A 66 0 SHEET 2 A 6 ASP A 39 LYS A 57 -1 N VAL A 51 O THR A 66 SHEET 3 A 6 GLU A 20 ALA A 36 -1 N GLN A 22 O LYS A 54 SHEET 4 A 6 VAL A 136 ASN A 155 -1 O LYS A 150 N GLU A 27 SHEET 5 A 6 ASP A 160 ALA A 176 -1 O ILE A 175 N MET A 138 SHEET 6 A 6 ARG A 182 ALA A 190 -1 O ARG A 182 N ALA A 176 SHEET 1 B 7 ILE A 407 VAL A 410 0 SHEET 2 B 7 VAL A 425 ALA A 433 -1 O LEU A 426 N LEU A 409 SHEET 3 B 7 GLU A 386 ASN A 399 -1 N THR A 395 O ALA A 433 SHEET 4 B 7 GLU A 372 GLU A 383 -1 N TRP A 381 O ALA A 388 SHEET 5 B 7 GLY A 353 GLU A 360 -1 N VAL A 355 O TYR A 380 SHEET 6 B 7 GLY A 221 MET A 227 1 N LEU A 226 O VAL A 354 SHEET 7 B 7 VAL A 425 ALA A 433 -1 O VAL A 427 N VAL A 225 SHEET 1 C 6 VAL A 302 LEU A 303 0 SHEET 2 C 6 LYS A 295 GLU A 299 -1 N GLU A 299 O VAL A 302 SHEET 3 C 6 ILE A 270 LEU A 273 -1 N ILE A 270 O VAL A 297 SHEET 4 C 6 ASN A 333 LEU A 336 -1 O ASN A 333 N LEU A 273 SHEET 5 C 6 THR A 420 ALA A 422 1 O ILE A 421 N LEU A 336 SHEET 6 C 6 LYS A 415 VAL A 416 -1 N LYS A 415 O ALA A 422 SHEET 1 D 2 GLY A 324 PHE A 325 0 SHEET 2 D 2 GLY A 328 ILE A 329 -1 O GLY A 328 N PHE A 325 SHEET 1 E 6 LYS B 60 THR B 66 0 SHEET 2 E 6 ASP B 39 LYS B 57 -1 N ILE B 53 O PHE B 64 SHEET 3 E 6 GLU B 20 ALA B 36 -1 N ALA B 36 O ASP B 39 SHEET 4 E 6 VAL B 136 ASN B 155 -1 O THR B 154 N ILE B 23 SHEET 5 E 6 ASP B 160 ALA B 176 -1 O MET B 165 N ILE B 149 SHEET 6 E 6 ARG B 182 ALA B 190 -1 O ARG B 182 N ALA B 176 SHEET 1 F 6 GLU B 386 VAL B 391 0 SHEET 2 F 6 GLU B 372 GLU B 383 -1 N GLY B 379 O VAL B 391 SHEET 3 F 6 GLY B 353 GLU B 360 -1 N VAL B 355 O TYR B 380 SHEET 4 F 6 GLY B 221 MET B 227 1 N LEU B 226 O VAL B 354 SHEET 5 F 6 VAL B 425 ALA B 433 -1 O VAL B 427 N VAL B 225 SHEET 6 F 6 ILE B 407 VAL B 410 -1 N LEU B 409 O LEU B 426 SHEET 1 G 5 GLU B 386 VAL B 391 0 SHEET 2 G 5 GLU B 372 GLU B 383 -1 N GLY B 379 O VAL B 391 SHEET 3 G 5 THR B 395 ASN B 399 -1 O ILE B 396 N LEU B 375 SHEET 4 G 5 VAL B 425 ALA B 433 -1 O ALA B 433 N THR B 395 SHEET 5 G 5 ILE B 407 VAL B 410 -1 N LEU B 409 O LEU B 426 SHEET 1 H 6 VAL B 302 LEU B 303 0 SHEET 2 H 6 LYS B 295 GLU B 299 -1 N GLU B 299 O VAL B 302 SHEET 3 H 6 ILE B 270 LEU B 273 -1 N ILE B 270 O VAL B 297 SHEET 4 H 6 ASN B 333 LEU B 336 -1 O MET B 335 N LYS B 271 SHEET 5 H 6 THR B 420 ALA B 422 1 O ILE B 421 N LEU B 336 SHEET 6 H 6 LYS B 415 VAL B 416 -1 N LYS B 415 O ALA B 422 SHEET 1 I 2 GLY B 324 PHE B 325 0 SHEET 2 I 2 GLY B 328 ILE B 329 -1 O GLY B 328 N PHE B 325 CRYST1 80.367 106.637 120.382 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012443 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008307 0.00000