PDB Short entry for 1VOM HEADER MUSCLE PROTEIN 09-NOV-95 1VOM TITLE COMPLEX BETWEEN DICTYOSTELIUM MYOSIN AND MGADP AND VANADATE AT 1.9A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRUNCATED AT RESIDUE 762; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THIS MOLECULE WAS TRUNCATED TO YIELD A FRAGMENT THAT COMPND 7 CRYSTALLIZES READILY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 44689 KEYWDS MYOSIN, MOLECULAR MOTOR, TRANSITION-STATE ANALOG, MUSCLE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.RAYMENT,C.A.SMITH REVDAT 3 14-FEB-24 1VOM 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1VOM 1 VERSN REVDAT 1 23-DEC-96 1VOM 0 JRNL AUTH C.A.SMITH,I.RAYMENT JRNL TITL X-RAY STRUCTURE OF THE MAGNESIUM(II).ADP.VANADATE COMPLEX OF JRNL TITL 2 THE DICTYOSTELIUM DISCOIDEUM MYOSIN MOTOR DOMAIN TO 1.9 A JRNL TITL 3 RESOLUTION. JRNL REF BIOCHEMISTRY V. 35 5404 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8611530 JRNL DOI 10.1021/BI952633+ REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.FISHER,C.A.SMITH,J.THODEN,R.SMITH,K.SUTOH,H.M.HOLDEN, REMARK 1 AUTH 2 I.RAYMENT REMARK 1 TITL STRUCTURAL STUDIES OF MYOSIN:NUCLEOTIDE COMPLEXES: A REVISED REMARK 1 TITL 2 MODEL FOR THE MOLECULAR BASIS OF MUSCLE CONTRACTION REMARK 1 REF BIOPHYS.J. V. 68 19S 1995 REMARK 1 REFN ISSN 0006-3495 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.J.FISHER,C.A.SMITH,J.B.THODEN,R.SMITH,K.SUTOH,H.M.HOLDEN, REMARK 1 AUTH 2 I.RAYMENT REMARK 1 TITL X-RAY STRUCTURES OF THE MYOSIN MOTOR DOMAIN OF DICTYOSTELIUM REMARK 1 TITL 2 DISCOIDEUM COMPLEXED WITH MGADP.BEFX AND MGADP.ALF4- REMARK 1 REF BIOCHEMISTRY V. 34 8960 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH I.RAYMENT,W.R.RYPNIEWSKI,K.SCHMIDT-BASE,R.SMITH, REMARK 1 AUTH 2 D.R.TOMCHICK,M.M.BENNING,D.A.WINKELMANN,G.WESENBERG, REMARK 1 AUTH 3 H.M.HOLDEN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF MYOSIN SUBFRAGMENT-1: A REMARK 1 TITL 2 MOLECULAR MOTOR REMARK 1 REF SCIENCE V. 261 50 1993 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.ITAKURA,H.YAMAKAWA,Y.Y.TOYOSHIMA,A.ISHIJIMA,T.KOJIMA, REMARK 1 AUTH 2 Y.HARADA,T.YANAGIDA,T.WAKABAYASHI,K.SUTOH REMARK 1 TITL FORCE-GENERATING DOMAIN OF MYOSIN MOTOR REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 196 1504 1993 REMARK 1 REFN ISSN 0006-291X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 73626 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1940 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 73626 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 705 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.650 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.004 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75066 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 SSBOND REMARK 400 THIS LIES BETWEEN TWOFOLD RELATED MOLECULES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 205 REMARK 465 ASN A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 ASN A 711 REMARK 465 ALA A 716 REMARK 465 GLU A 717 REMARK 465 ASP A 718 REMARK 465 SER A 719 REMARK 465 ASP A 724 REMARK 465 ALA A 725 REMARK 465 VAL A 726 REMARK 465 LEU A 727 REMARK 465 LYS A 728 REMARK 465 HIS A 729 REMARK 465 LEU A 730 REMARK 465 ALA A 748 REMARK 465 GLY A 749 REMARK 465 GLN A 750 REMARK 465 LEU A 751 REMARK 465 ALA A 752 REMARK 465 ARG A 753 REMARK 465 ILE A 754 REMARK 465 GLU A 755 REMARK 465 GLU A 756 REMARK 465 ALA A 757 REMARK 465 ARG A 758 REMARK 465 GLU A 759 REMARK 465 LEU A 760 REMARK 465 PRO A 761 REMARK 465 ASN A 762 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 22 OG REMARK 470 ASP A 42 OD1 OD2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 VAL A 65 CG1 CG2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 GLN A 204 CG CD OE1 NE2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 SER A 443 OG REMARK 470 LYS A 488 CG CD CE NZ REMARK 470 VAL A 489 CG1 CG2 REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 LYS A 623 CG CD CE NZ REMARK 470 ILE A 628 CG1 CG2 REMARK 470 ILE A 697 CG1 CG2 CD1 REMARK 470 ASP A 700 CG OD1 OD2 REMARK 470 VAL A 702 CG1 CG2 REMARK 470 LYS A 703 CG CD CE NZ REMARK 470 ARG A 704 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 705 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 706 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 707 CG CD1 CD2 REMARK 470 LEU A 708 CG CD1 CD2 REMARK 470 VAL A 712 CG1 CG2 REMARK 470 PRO A 713 CG CD REMARK 470 ARG A 714 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 715 CG OD1 OD2 REMARK 470 GLN A 720 CG CD OE1 NE2 REMARK 470 ILE A 732 CG1 CG2 CD1 REMARK 470 ASP A 733 CG OD1 OD2 REMARK 470 GLN A 736 CG CD OE1 NE2 REMARK 470 TYR A 737 OH REMARK 470 ILE A 741 CG1 CG2 CD1 REMARK 470 THR A 742 OG1 CG2 REMARK 470 PHE A 746 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 747 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG LYS A 498 NZ LYS A 498 2755 0.67 REMARK 500 CD LYS A 498 CE LYS A 498 2755 0.74 REMARK 500 CG LYS A 498 CE LYS A 498 2755 0.99 REMARK 500 CD LYS A 498 CD LYS A 498 2755 1.16 REMARK 500 CB LYS A 498 NZ LYS A 498 2755 1.60 REMARK 500 OD1 ASN A 500 O HOH A 1464 2755 1.66 REMARK 500 CG LYS A 498 CD LYS A 498 2755 1.92 REMARK 500 CE LYS A 498 CE LYS A 498 2755 2.08 REMARK 500 CD LYS A 498 NZ LYS A 498 2755 2.11 REMARK 500 CB LYS A 498 CE LYS A 498 2755 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 48 CD GLU A 48 OE1 0.068 REMARK 500 GLU A 212 CD GLU A 212 OE2 0.083 REMARK 500 GLU A 275 CD GLU A 275 OE2 0.066 REMARK 500 GLU A 291 CD GLU A 291 OE1 0.076 REMARK 500 GLU A 292 CD GLU A 292 OE1 0.069 REMARK 500 GLU A 492 CD GLU A 492 OE1 0.066 REMARK 500 GLU A 646 CD GLU A 646 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 141 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 169 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLU A 223 CG - CD - OE2 ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 267 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 314 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 320 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 322 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 332 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 332 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 371 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 371 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 397 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 419 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 CYS A 442 CB - CA - C ANGL. DEV. = 9.9 DEGREES REMARK 500 CYS A 442 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 TYR A 494 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 518 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 518 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 583 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 590 CB - CG - OD1 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 595 CB - CG - OD1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 595 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 602 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 620 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 PHE A 627 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 -6.04 -57.76 REMARK 500 GLN A 68 173.33 -49.18 REMARK 500 LYS A 144 101.26 -41.92 REMARK 500 ASN A 233 118.93 -160.83 REMARK 500 LEU A 262 59.96 37.05 REMARK 500 THR A 274 -6.64 79.01 REMARK 500 ALA A 299 -156.29 -137.52 REMARK 500 SER A 443 4.39 -154.82 REMARK 500 SER A 465 -162.62 -115.20 REMARK 500 GLU A 497 5.74 -61.88 REMARK 500 ASN A 500 42.85 75.64 REMARK 500 ASP A 509 110.99 -160.75 REMARK 500 LYS A 553 19.48 58.90 REMARK 500 TYR A 698 -53.36 -27.65 REMARK 500 ASP A 733 122.34 81.82 REMARK 500 THR A 742 -21.60 -152.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 997 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 186 OG1 REMARK 620 2 SER A 237 OG 85.5 REMARK 620 3 VO4 A 998 O1 176.3 94.3 REMARK 620 4 ADP A 999 O1B 92.1 172.7 88.6 REMARK 620 5 HOH A1694 O 93.8 85.1 89.9 88.3 REMARK 620 6 HOH A1695 O 84.0 95.6 92.3 90.9 177.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 998 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 999 O3B REMARK 620 2 VO4 A 998 O1 92.8 REMARK 620 3 VO4 A 998 O2 87.7 125.4 REMARK 620 4 VO4 A 998 O3 89.3 129.4 105.2 REMARK 620 5 VO4 A 998 O4 170.2 96.0 83.7 88.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 999 DBREF 1VOM A 1 759 UNP P08799 MYS2_DICDI 1 759 SEQADV 1VOM ASP A 42 UNP P08799 LYS 42 CONFLICT SEQADV 1VOM CYS A 312 UNP P08799 TYR 312 CONFLICT SEQADV 1VOM GLU A 321 UNP P08799 SER 321 CONFLICT SEQADV 1VOM ASP A 322 UNP P08799 GLU 322 CONFLICT SEQADV 1VOM SER A 443 UNP P08799 GLN 443 CONFLICT SEQADV 1VOM ALA A 446 UNP P08799 LYS 446 CONFLICT SEQADV 1VOM VAL A 489 UNP P08799 LEU 489 CONFLICT SEQRES 1 A 762 MET ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS SEQRES 2 A 762 TYR LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS SEQRES 3 A 762 LEU THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO SEQRES 4 A 762 ASP PRO ASP GLU ARG ASP SER TYR GLU CYS GLY GLU ILE SEQRES 5 A 762 VAL SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL SEQRES 6 A 762 ASP GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN SEQRES 7 A 762 GLN ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SEQRES 8 A 762 SER GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS SEQRES 9 A 762 ASN LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR SEQRES 10 A 762 TYR SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS SEQRES 11 A 762 ARG ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE SEQRES 12 A 762 LYS GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE SEQRES 13 A 762 ALA ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP SEQRES 14 A 762 ARG GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY SEQRES 15 A 762 ALA GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR SEQRES 16 A 762 LEU ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER SEQRES 17 A 762 GLY VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE SEQRES 18 A 762 LEU GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN SEQRES 19 A 762 ASN SER SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE SEQRES 20 A 762 ASN ASN ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER SEQRES 21 A 762 TYR LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU SEQRES 22 A 762 THR GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA SEQRES 23 A 762 GLY ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA SEQRES 24 A 762 GLY PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS SEQRES 25 A 762 VAL ASP ILE LYS GLY VAL SER ASP GLU ASP GLU PHE LYS SEQRES 26 A 762 ILE THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN SEQRES 27 A 762 GLU GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE SEQRES 28 A 762 LEU HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY SEQRES 29 A 762 GLU GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA SEQRES 30 A 762 ALA SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU SEQRES 31 A 762 LYS ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP SEQRES 32 A 762 LEU VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SEQRES 33 A 762 SER ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU SEQRES 34 A 762 PHE LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS SEQRES 35 A 762 SER GLU ARG ALA ALA TYR PHE ILE GLY VAL LEU ASP ILE SEQRES 36 A 762 SER GLY PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN SEQRES 37 A 762 LEU CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE SEQRES 38 A 762 PHE ASN HIS HIS MET PHE LYS VAL GLU GLN GLU GLU TYR SEQRES 39 A 762 LEU LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY SEQRES 40 A 762 LEU ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG SEQRES 41 A 762 GLN PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER SEQRES 42 A 762 VAL PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS SEQRES 43 A 762 LEU HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU SEQRES 44 A 762 GLU PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS SEQRES 45 A 762 TYR ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU SEQRES 46 A 762 GLU LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU SEQRES 47 A 762 CYS PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU SEQRES 48 A 762 PHE ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY SEQRES 49 A 762 ALA ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN SEQRES 50 A 762 LEU ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO SEQRES 51 A 762 HIS PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU SEQRES 52 A 762 PRO ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU SEQRES 53 A 762 ARG CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG SEQRES 54 A 762 LYS GLY PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL SEQRES 55 A 762 LYS ARG TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP SEQRES 56 A 762 ALA GLU ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS SEQRES 57 A 762 HIS LEU ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE SEQRES 58 A 762 THR LYS ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE SEQRES 59 A 762 GLU GLU ALA ARG GLU LEU PRO ASN HET MG A 997 1 HET VO4 A 998 5 HET ADP A 999 27 HETNAM MG MAGNESIUM ION HETNAM VO4 VANADATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 VO4 O4 V 3- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *705(H2 O) HELIX 1 1 ASP A 10 LEU A 15 1 6 HELIX 2 2 SER A 22 THR A 28 1 7 HELIX 3 3 LYS A 74 ASP A 76 5 3 HELIX 4 4 ILE A 83 PHE A 85 5 3 HELIX 5 5 MET A 91 GLU A 93 5 3 HELIX 6 6 GLU A 99 GLN A 112 1 14 HELIX 7 7 GLN A 137 PHE A 143 1 7 HELIX 8 8 ARG A 148 GLU A 150 5 3 HELIX 9 9 ILE A 155 ASP A 169 1 15 HELIX 10 10 LYS A 185 VAL A 199 1 15 HELIX 11 11 VAL A 210 GLY A 226 1 17 HELIX 12 12 LYS A 265 VAL A 268 5 4 HELIX 13 13 HIS A 279 GLY A 287 1 9 HELIX 14 14 ALA A 290 ALA A 295 1 6 HELIX 15 15 PRO A 301 SER A 303 5 3 HELIX 16 16 ASP A 320 VAL A 334 1 15 HELIX 17 17 GLN A 338 ASN A 356 1 19 HELIX 18 18 THR A 373 PHE A 382 1 10 HELIX 19 19 PRO A 386 MET A 394 1 9 HELIX 20 20 VAL A 411 LEU A 441 1 31 HELIX 21 21 PHE A 466 MET A 486 1 21 HELIX 22 22 LYS A 488 LYS A 496 1 9 HELIX 23 23 GLN A 511 ASP A 518 1 8 HELIX 24 24 ILE A 525 VAL A 534 1 10 HELIX 25 25 ASP A 540 PHE A 551 1 12 HELIX 26 26 TRP A 584 LYS A 589 1 6 HELIX 27 27 GLN A 594 LYS A 601 1 8 HELIX 28 28 ASN A 606 ASN A 613 1 8 HELIX 29 29 PRO A 615 ALA A 618 1 4 HELIX 30 30 VAL A 630 THR A 647 1 18 HELIX 31 31 ASP A 669 ASN A 679 1 11 HELIX 32 32 VAL A 681 LYS A 690 1 10 HELIX 33 33 TYR A 698 ARG A 704 1 7 SHEET 1 A 2 TYR A 34 TYR A 37 0 SHEET 2 A 2 GLU A 48 GLU A 51 -1 N GLY A 50 O ILE A 35 SHEET 1 B 3 ASP A 69 LYS A 73 0 SHEET 2 B 3 SER A 59 LYS A 63 -1 N PHE A 62 O ARG A 70 SHEET 3 B 3 ILE A 52 GLU A 55 -1 N SER A 54 O THR A 61 SHEET 1 C 7 TYR A 116 SER A 119 0 SHEET 2 C 7 PHE A 122 VAL A 126 -1 N VAL A 124 O THR A 117 SHEET 3 C 7 ASN A 649 ILE A 656 1 N ARG A 654 O LEU A 123 SHEET 4 C 7 GLN A 173 THR A 178 1 N SER A 174 O ASN A 649 SHEET 5 C 7 TYR A 448 ASP A 454 1 N GLY A 451 O GLN A 173 SHEET 6 C 7 GLY A 240 PHE A 247 -1 N PHE A 247 O TYR A 448 SHEET 7 C 7 ILE A 253 TYR A 261 -1 N TYR A 261 O GLY A 240 SHEET 1 D 2 PHE A 359 LYS A 361 0 SHEET 2 D 2 ALA A 367 LEU A 369 -1 N VAL A 368 O GLU A 360 SHEET 1 E 2 ARG A 397 ALA A 400 0 SHEET 2 E 2 ASP A 403 ALA A 406 -1 N VAL A 405 O ILE A 398 SHEET 1 F 3 TYR A 558 GLU A 560 0 SHEET 2 F 3 GLU A 567 HIS A 572 -1 N GLY A 569 O GLU A 559 SHEET 3 F 3 GLY A 575 GLU A 580 -1 N TYR A 579 O PHE A 568 SHEET 1 G 3 ASN A 694 ILE A 697 0 SHEET 2 G 3 LYS A 743 PHE A 746 -1 N PHE A 746 O ASN A 694 SHEET 3 G 3 TYR A 737 PHE A 739 -1 N ARG A 738 O PHE A 745 LINK OG1 THR A 186 MG MG A 997 1555 1555 2.00 LINK OG SER A 237 MG MG A 997 1555 1555 2.12 LINK MG MG A 997 O1 VO4 A 998 1555 1555 1.88 LINK MG MG A 997 O1B ADP A 999 1555 1555 2.19 LINK MG MG A 997 O HOH A1694 1555 1555 2.04 LINK MG MG A 997 O HOH A1695 1555 1555 2.06 LINK V VO4 A 998 O3B ADP A 999 1555 1555 2.08 CISPEP 1 GLN A 521 PRO A 522 0 -0.25 SITE 1 AC1 6 THR A 186 SER A 237 VO4 A 998 ADP A 999 SITE 2 AC1 6 HOH A1694 HOH A1695 SITE 1 AC2 14 SER A 181 GLY A 182 LYS A 185 ASN A 233 SITE 2 AC2 14 SER A 236 SER A 237 ARG A 238 SER A 456 SITE 3 AC2 14 GLY A 457 MG A 997 ADP A 999 HOH A1694 SITE 4 AC2 14 HOH A1695 HOH A1696 SITE 1 AC3 20 ASN A 127 PRO A 128 PHE A 129 LYS A 130 SITE 2 AC3 20 TYR A 135 GLY A 182 ALA A 183 GLY A 184 SITE 3 AC3 20 LYS A 185 THR A 186 GLU A 187 ASN A 233 SITE 4 AC3 20 MG A 997 VO4 A 998 HOH A1002 HOH A1052 SITE 5 AC3 20 HOH A1101 HOH A1257 HOH A1694 HOH A1695 CRYST1 84.500 145.400 153.800 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006502 0.00000