PDB Short entry for 1VRY
HEADER    MEMBRANE PROTEIN                        20-JUL-05   1VRY              
TITLE     SECOND AND THIRD TRANSMEMBRANE DOMAINS OF THE ALPHA-1 SUBUNIT OF HUMAN
TITLE    2 GLYCINE RECEPTOR                                                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GLYCINE RECEPTOR ALPHA-1 CHAIN;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: SECOND AND THIRD TRANSMEMBRANE DOMAINS;                    
COMPND   5 SYNONYM: GLYCINE RECEPTOR 48 KDA SUBUNIT, STRYCHNINE BINDING SUBUNIT;
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: GLRA1;                                                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  10 EXPRESSION_SYSTEM_PLASMID: PLYSS                                     
KEYWDS    GLYCINE RECEPTOR, SECOND TRANSMEMBRANE DOMAIN, THIRD TRANSMEMBRANE    
KEYWDS   2 DOMAIN, MEMBRANE PROTEIN                                             
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    D.MA,Z.LIU,L.LI,P.TANG,Y.XU                                           
REVDAT   4   27-DEC-23 1VRY    1       REMARK                                   
REVDAT   3   20-OCT-21 1VRY    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1VRY    1       VERSN                                    
REVDAT   1   26-JUL-05 1VRY    0                                                
SPRSDE     26-JUL-05 1VRY      1ZHD                                             
JRNL        AUTH   D.MA,Z.LIU,L.LI,P.TANG,Y.XU                                  
JRNL        TITL   STRUCTURE AND DYNAMICS OF THE SECOND AND THIRD TRANSMEMBRANE 
JRNL        TITL 2 DOMAINS OF HUMAN GLYCINE RECEPTOR.                           
JRNL        REF    BIOCHEMISTRY                  V.  44  8790 2005              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   15952785                                                     
JRNL        DOI    10.1021/BI050256N                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XPLOR-NIH 2.9.6                                      
REMARK   3   AUTHORS     : SCHWIETERS, C.D. ET AL                               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1VRY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000003000.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 1MM TM23 U-15N, TRIFLUOROETHANOL   
REMARK 210                                   -D2; 1MM TM23 U-15N,13C,           
REMARK 210                                   TRIFLUOROETHANOL-D2                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 2D         
REMARK 210                                   NOESY; 2D TOCSY; 3D HNCA; 3D HNCO  
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 2.6, NMRPIPE SGI6X,        
REMARK 210                                   XPLOR-NIH 2.9.6                    
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 50                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LOWEST ENERGY, STRUCTURES      
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING STANDARD 15N FILTERED     
REMARK 210  NOESY SPECTROSCOPY AND H/D EXCHANGE EXPERIMENTS TOGETHER WITH HA    
REMARK 210  AND CA CHEMICAL SHIFT INDEXES FOR IDENTIFICATION OF INTRAHELICAL    
REMARK 210  HYDROGEN BONDING.                                                   
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-20                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     LYS A    58                                                      
REMARK 465     LYS A    59                                                      
REMARK 465     LYS A    60                                                      
REMARK 465     LYS A    61                                                      
REMARK 465     HIS A    62                                                      
REMARK 465     ARG A    63                                                      
REMARK 465     LEU A    64                                                      
REMARK 465     LEU A    65                                                      
REMARK 465     GLU A    66                                                      
REMARK 465     HIS A    67                                                      
REMARK 465     HIS A    68                                                      
REMARK 465     HIS A    69                                                      
REMARK 465     HIS A    70                                                      
REMARK 465     HIS A    71                                                      
REMARK 465     HIS A    72                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    TRP A    34     H    CYS A    38              1.57            
REMARK 500   O    LEU A    35     H    LEU A    39              1.58            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 VAL A   1      -74.20    -60.33                                   
REMARK 500  1 SER A  21      -58.67   -174.20                                   
REMARK 500  1 LYS A  24      -51.01   -177.99                                   
REMARK 500  1 ASP A  32      -33.47    161.25                                   
REMARK 500  2 VAL A   1      -74.05    -60.21                                   
REMARK 500  2 ALA A  20      -50.77   -177.30                                   
REMARK 500  2 LEU A  22       53.71   -175.53                                   
REMARK 500  2 LYS A  24      -46.95   -177.46                                   
REMARK 500  2 ASP A  32      -37.00    177.62                                   
REMARK 500  3 VAL A   1      -73.03    -58.12                                   
REMARK 500  3 ARG A  19      -70.86   -161.75                                   
REMARK 500  3 ALA A  20      -56.90    178.51                                   
REMARK 500  3 SER A  21      133.59   -177.26                                   
REMARK 500  3 LEU A  22       65.78   -170.16                                   
REMARK 500  3 LYS A  24     -100.85   -159.55                                   
REMARK 500  3 ASP A  32      -38.26    177.88                                   
REMARK 500  3 SER A  56     -131.92   -165.46                                   
REMARK 500  4 VAL A   1      -72.90    -58.56                                   
REMARK 500  4 ALA A  20      -48.56   -174.32                                   
REMARK 500  4 LEU A  22       62.73   -179.88                                   
REMARK 500  4 LYS A  24      -46.08   -174.31                                   
REMARK 500  4 ASP A  32      -37.04    179.72                                   
REMARK 500  5 VAL A   1      -73.81    -59.83                                   
REMARK 500  5 ARG A  19      -79.93   -167.61                                   
REMARK 500  5 ALA A  20      -45.44    168.41                                   
REMARK 500  5 LEU A  22       61.90   -170.50                                   
REMARK 500  5 LYS A  24      -51.34   -176.90                                   
REMARK 500  5 ASP A  32      -38.18    179.39                                   
REMARK 500  5 SER A  56      122.33     58.33                                   
REMARK 500  6 VAL A   1      -74.33    -60.18                                   
REMARK 500  6 ARG A  19      -36.83     71.27                                   
REMARK 500  6 LEU A  22       61.51   -174.83                                   
REMARK 500  6 LYS A  24      -51.82   -171.97                                   
REMARK 500  6 ASP A  32      -34.12    165.15                                   
REMARK 500  7 VAL A   1      -73.48    -58.03                                   
REMARK 500  7 ARG A  19      -65.47   -164.12                                   
REMARK 500  7 ALA A  20      -44.84    171.71                                   
REMARK 500  7 LEU A  22       60.20   -176.18                                   
REMARK 500  7 LYS A  24      -48.91   -175.79                                   
REMARK 500  7 ASP A  32      -38.87    179.26                                   
REMARK 500  7 SER A  56     -139.48   -157.48                                   
REMARK 500  8 VAL A   1      -72.00    -65.21                                   
REMARK 500  8 ARG A  19      -49.13   -151.00                                   
REMARK 500  8 ALA A  20      -52.82   -169.78                                   
REMARK 500  8 LEU A  22       55.46   -176.15                                   
REMARK 500  8 LYS A  24      -48.11   -177.17                                   
REMARK 500  8 ASP A  32      -38.25    178.29                                   
REMARK 500  8 ALA A  36       39.89    -82.89                                   
REMARK 500  8 VAL A  37      -49.59   -163.14                                   
REMARK 500  8 SER A  56       57.14     70.25                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     130 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1VRY A   -2    57  UNP    P23415   GLRA1_HUMAN    278    337             
SEQADV 1VRY LEU A   -3  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY LEU A   11  UNP  P23415    MET   291 ENGINEERED MUTATION            
SEQADV 1VRY LEU A   35  UNP  P23415    MET   315 ENGINEERED MUTATION            
SEQADV 1VRY LYS A   58  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY LYS A   59  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY LYS A   60  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY LYS A   61  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   62  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY ARG A   63  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY LEU A   64  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY LEU A   65  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY GLU A   66  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   67  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   68  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   69  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   70  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   71  UNP  P23415              CLONING ARTIFACT               
SEQADV 1VRY HIS A   72  UNP  P23415              CLONING ARTIFACT               
SEQRES   1 A   76  LEU PRO ALA ARG VAL GLY LEU GLY ILE THR THR VAL LEU          
SEQRES   2 A   76  THR LEU THR THR GLN SER SER GLY SER ARG ALA SER LEU          
SEQRES   3 A   76  PRO LYS VAL SER TYR VAL LYS ALA ILE ASP ILE TRP LEU          
SEQRES   4 A   76  ALA VAL CYS LEU LEU PHE VAL PHE SER ALA LEU LEU GLU          
SEQRES   5 A   76  TYR ALA ALA VAL ASN PHE VAL SER ARG LYS LYS LYS LYS          
SEQRES   6 A   76  HIS ARG LEU LEU GLU HIS HIS HIS HIS HIS HIS                  
HELIX    1   1 LEU A   -3  GLY A   17  1                                  21    
HELIX    2   2 LYS A   24  TRP A   34  1                                  11    
HELIX    3   3 TRP A   34  SER A   56  1                                  23    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000