PDB Short entry for 1VTN HEADER TRANSCRIPTION/DNA 06-JAN-95 1VTN TITLE CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF TITLE 2 RESEMBLES HISTONE H5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*CP*TP*AP*AP*GP*TP*CP*AP*AP*CP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*GP*TP*TP*GP*AP*CP*TP*TP*AP*GP*TP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HNF-3/FORK HEAD DNA-RECOGNITION MOTIF; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.L.CLARK,E.D.HALAY,E.LAI,S.K.BURLEY REVDAT 3 27-DEC-23 1VTN 1 REMARK REVDAT 2 03-FEB-21 1VTN 1 AUTHOR JRNL REMARK LINK REVDAT 1 13-JUL-11 1VTN 0 JRNL AUTH K.L.CLARK,E.D.HALAY,E.LAI,S.K.BURLEY JRNL TITL CO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION JRNL TITL 2 MOTIF RESEMBLES HISTONE H5 JRNL REF NATURE V. 364 412 1993 JRNL REFN ISSN 0028-0836 JRNL PMID 8332212 JRNL DOI 10.1038/364412A0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 848 REMARK 3 NUCLEIC ACID ATOMS : 527 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000003045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.35000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 1 C5' DG A 1 C4' 0.065 REMARK 500 DG A 1 N9 DG A 1 C4 0.051 REMARK 500 DC A 3 O3' DC A 3 C3' -0.047 REMARK 500 DC A 3 N1 DC A 3 C6 -0.048 REMARK 500 DC A 3 C4 DC A 3 C5 -0.055 REMARK 500 DT A 4 C2' DT A 4 C1' -0.061 REMARK 500 DT A 4 O3' DT A 4 C3' -0.064 REMARK 500 DA A 6 C6 DA A 6 N1 -0.048 REMARK 500 DA A 6 N9 DA A 6 C4 -0.044 REMARK 500 DG A 7 C6 DG A 7 N1 -0.055 REMARK 500 DG A 7 C8 DG A 7 N9 -0.045 REMARK 500 DT A 8 O4' DT A 8 C4' -0.061 REMARK 500 DT A 8 C5 DT A 8 C7 0.054 REMARK 500 DC A 9 N1 DC A 9 C2 -0.063 REMARK 500 DA A 11 P DA A 11 O5' -0.061 REMARK 500 DA A 11 C6 DA A 11 N1 0.050 REMARK 500 DC A 12 O3' DC A 12 C3' -0.039 REMARK 500 DC A 13 C5' DC A 13 C4' 0.048 REMARK 500 DG B 21 C5' DG B 21 C4' 0.065 REMARK 500 DG B 21 C6 DG B 21 N1 -0.046 REMARK 500 DG B 22 O4' DG B 22 C4' -0.075 REMARK 500 DT B 23 C5' DT B 23 C4' -0.069 REMARK 500 DT B 23 O3' DT B 23 C3' -0.036 REMARK 500 DT B 23 C5 DT B 23 C7 -0.044 REMARK 500 DT B 24 N3 DT B 24 C4 -0.058 REMARK 500 DG B 25 N3 DG B 25 C4 -0.049 REMARK 500 DG B 25 C4 DG B 25 C5 -0.044 REMARK 500 DG B 25 C6 DG B 25 N1 -0.043 REMARK 500 DA B 26 N3 DA B 26 C4 -0.038 REMARK 500 DA B 26 C4 DA B 26 C5 -0.042 REMARK 500 DT B 28 C5 DT B 28 C6 -0.045 REMARK 500 DT B 28 C6 DT B 28 N1 -0.062 REMARK 500 DT B 29 C6 DT B 29 N1 -0.049 REMARK 500 DT B 29 C5 DT B 29 C7 0.040 REMARK 500 DG B 31 C4' DG B 31 C3' -0.061 REMARK 500 DG B 31 N1 DG B 31 C2 -0.050 REMARK 500 DG B 31 C4 DG B 31 C5 -0.045 REMARK 500 DT B 32 C5' DT B 32 C4' -0.091 REMARK 500 DT B 32 C4' DT B 32 C3' -0.071 REMARK 500 DT B 32 C6 DT B 32 N1 -0.046 REMARK 500 DT B 32 O3' DC B 33 P 0.080 REMARK 500 DC B 33 C4' DC B 33 C3' -0.060 REMARK 500 DC B 33 O4' DC B 33 C4' -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A 1 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DG A 1 C6 - N1 - C2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG A 1 N1 - C2 - N3 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG A 1 C4 - C5 - N7 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG A 1 N9 - C4 - C5 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA A 2 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 DA A 2 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC A 3 O4' - C1' - C2' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DT A 4 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT A 4 C4 - C5 - C6 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT A 4 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA A 5 O3' - P - O5' ANGL. DEV. = -14.8 DEGREES REMARK 500 DA A 5 O4' - C4' - C3' ANGL. DEV. = -3.9 DEGREES REMARK 500 DA A 5 C1' - O4' - C4' ANGL. DEV. = 5.7 DEGREES REMARK 500 DA A 5 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DA A 5 N9 - C4 - C5 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA A 6 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA A 6 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA A 6 N1 - C6 - N6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG A 7 C4 - C5 - N7 ANGL. DEV. = -2.9 DEGREES REMARK 500 DG A 7 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 7 N1 - C6 - O6 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG A 7 C5 - C6 - O6 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT A 8 O4' - C4' - C3' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT A 8 O4' - C1' - C2' ANGL. DEV. = -17.1 DEGREES REMARK 500 DT A 8 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT A 8 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT A 8 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DA A 10 O4' - C1' - C2' ANGL. DEV. = -8.6 DEGREES REMARK 500 DA A 10 O4' - C1' - N9 ANGL. DEV. = 8.5 DEGREES REMARK 500 DA A 10 N1 - C2 - N3 ANGL. DEV. = -3.0 DEGREES REMARK 500 DA A 11 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DA A 11 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC A 12 O4' - C1' - C2' ANGL. DEV. = -9.7 DEGREES REMARK 500 DC A 12 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC A 13 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC A 13 C4 - C5 - C6 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG B 21 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG B 21 N9 - C4 - C5 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG B 21 N3 - C2 - N2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DG B 22 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG B 22 O4' - C1' - C2' ANGL. DEV. = -11.2 DEGREES REMARK 500 DT B 23 P - O5' - C5' ANGL. DEV. = -15.4 DEGREES REMARK 500 DT B 23 N3 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT B 23 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT B 24 O4' - C4' - C3' ANGL. DEV. = -7.1 DEGREES REMARK 500 DT B 24 O4' - C1' - C2' ANGL. DEV. = -10.8 DEGREES REMARK 500 DT B 24 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 100 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 121 42.47 -76.24 REMARK 500 SER C 183 -77.16 -113.72 REMARK 500 PRO C 184 45.81 -86.46 REMARK 500 ASP C 185 -48.03 68.56 REMARK 500 LYS C 186 -123.89 60.00 REMARK 500 LYS C 189 113.06 76.13 REMARK 500 PHE C 203 41.50 -81.62 REMARK 500 CYS C 207 95.46 -163.07 REMARK 500 LYS C 213 109.49 88.60 REMARK 500 PHE C 215 98.72 -45.30 REMARK 500 LEU C 217 -90.55 -66.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS C 186 PRO C 187 147.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT A 4 0.07 SIDE CHAIN REMARK 500 DG B 25 0.05 SIDE CHAIN REMARK 500 DT B 29 0.06 SIDE CHAIN REMARK 500 DG B 31 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU C 171 O REMARK 620 2 ASN C 174 O 91.6 REMARK 620 3 PHE C 177 O 94.1 81.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 801 DBREF 1VTN C 117 217 UNP P55318 HN3G_HUMAN 115 215 DBREF 1VTN A 1 13 PDB 1VTN 1VTN 1 13 DBREF 1VTN B 21 33 PDB 1VTN 1VTN 21 33 SEQRES 1 A 13 DG DA DC DT DA DA DG DT DC DA DA DC DC SEQRES 1 B 13 DG DG DT DT DG DA DC DT DT DA DG DT DC SEQRES 1 C 102 HIS ALA LYS PRO PRO TYR SER TYR ILE SER LEU ILE THR SEQRES 2 C 102 MET ALA ILE GLN GLN ALA PRO GLY LYS MET LEU THR LEU SEQRES 3 C 102 SER GLU ILE TYR GLN TRP ILE MET ASP LEU PHE PRO TYR SEQRES 4 C 102 TYR ARG GLU ASN GLN GLN ARG TRP GLN ASN SER ILE ARG SEQRES 5 C 102 HIS SER LEU SER PHE ASN ASP CYS PHE VAL LYS VAL ALA SEQRES 6 C 102 ARG SER PRO ASP LYS PRO GLY LYS GLY SER TYR TRP ALA SEQRES 7 C 102 LEU HIS PRO SER SER GLY ASN MET PHE GLU ASN GLY CYS SEQRES 8 C 102 TYR LEU ARG ARG GLN LYS ARG PHE LYS LEU ALA HET MG C 801 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *5(H2 O) HELIX 1 1 SER C 123 GLN C 134 1 12 HELIX 2 2 THR C 141 PHE C 153 1 13 HELIX 3 3 PRO C 154 GLU C 158 5 5 HELIX 4 4 ASN C 159 ASN C 174 1 16 HELIX 5 5 PRO C 197 GLY C 200 5 4 SHEET 1 A 2 PHE C 177 VAL C 180 0 SHEET 2 A 2 TYR C 192 LEU C 195 -1 O TYR C 192 N VAL C 180 LINK O LEU C 171 MG MG C 801 1555 1555 2.51 LINK O ASN C 174 MG MG C 801 1555 1555 2.52 LINK O PHE C 177 MG MG C 801 1555 1555 2.46 SITE 1 AC1 4 LEU C 171 SER C 172 ASN C 174 PHE C 177 CRYST1 74.600 74.600 85.050 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013405 0.007739 0.000000 0.00000 SCALE2 0.000000 0.015479 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011758 0.00000