PDB Short entry for 1VZM HEADER CALCIUM-BINDING PROTEIN 21-MAY-04 1VZM TITLE OSTEOCALCIN FROM FISH ARGYROSOMUS REGIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OSTEOCALCIN; COMPND 3 CHAIN: A, B, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARGYROSOMUS REGIUS; SOURCE 3 ORGANISM_COMMON: MEAGRE; SOURCE 4 ORGANISM_TAXID: 172269 KEYWDS CALCIUM-BINDING PROTEIN, OSTEOCALCIN, BONE GLA PROTEIN, BGP, KEYWDS 2 HYDROXYAPATITE, GAMMA CARBOXYL GLUTAMIC ACID, VITAMIN K, BONE, KEYWDS 3 MINERALIZATION EXPDTA X-RAY DIFFRACTION AUTHOR C.FRAZAO,D.C.SIMES,R.COELHO,D.ALVES,M.K.WILLIAMSON,P.A.PRICE, AUTHOR 2 M.L.CANCELA,M.A.CARRONDO REVDAT 4 08-MAY-19 1VZM 1 REMARK LINK REVDAT 3 21-JUL-09 1VZM 1 REMARK DBREF REVDAT 2 24-FEB-09 1VZM 1 VERSN REVDAT 1 10-SEP-04 1VZM 0 JRNL AUTH C.FRAZAO,D.C.SIMES,R.COELHO,D.ALVES,M.K.WILLIAMSON, JRNL AUTH 2 P.A.PRICE,M.L.CANCELA,M.A.CARRONDO JRNL TITL STRUCTURAL EVIDENCE OF A FOURTH GLA RESIDUE IN FISH JRNL TITL 2 OSTEOCALCIN: BIOLOGICAL IMPLICATIONS JRNL REF BIOCHEMISTRY V. 44 1234 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15667217 JRNL DOI 10.1021/BI048336Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.C.SIMES,M.K.WILLIAMSON,J.B.ORTIZ-DELGADO,C.S.VIEGAS, REMARK 1 AUTH 2 P.A.PRICE,M.L.CANCELA REMARK 1 TITL PURIFICATION OF MATRIX GLA PROTEIN FROM A MARINE TELEOST REMARK 1 TITL 2 FISH, ARGYROSOMUS REGIUS: CALCIFIED CARTILAGE AND NOT BONE REMARK 1 TITL 3 AS THE PRIMARY SITE OF MGP ACCUMULATION IN FISH REMARK 1 REF J.BONE MINER.RES. V. 18 244 2003 REMARK 1 REFN ISSN 0884-0431 REMARK 1 PMID 12568402 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SHELLS REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.192 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.192 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 893 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 32406 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.188 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.188 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 2.800 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 840 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 30111 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1193.7 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 811.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 11 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 11214 REMARK 3 NUMBER OF RESTRAINTS : 13702 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.030 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.024 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.058 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.056 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.083 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.061 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.097 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EQUIVALENT BOND DISTANCES BETWEEN REMARK 3 MAGNESIUM AND WATER-OXYGENS OR CARBOXYLATE-OXYGENS, WERE REMARK 3 RESTRAINED TO CORRESPONDING AVERAGE DISTANCES, WITHOUT SPECIFIC REMARK 3 TARGET VALUES 17 RESIDUES WERE MODELED WITH ALTERNATING SIDE- REMARK 3 CHAINS, AND 5 RESIDUES HAVE THEIR SIDE-CHAINS NOT TOTALLY INSIDE REMARK 3 1 SIGMA (0.07 ELECTRONS/A**3) ELECTRON DENSITY MAPS REMARK 4 REMARK 4 1VZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1290015281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 22.20 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXCD, SHELXD, SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS OF 1.5 MICRO-L OF PROTEIN REMARK 280 SOLUTION, 10 MG/ML OSTEOCALCIN, 5 MM CACL2 AND 30 MM TRIS-HCL PH REMARK 280 = 8, PLUS 1.5 MICRO-L OF WELL SOLUTION, MGCL2 0.2M, 30% PEG 4K REMARK 280 AND TRIS-HCL 0.1M PH = 8.5, WERE EQUILIBRATED AGAINST 500 ML OF REMARK 280 WELL SOLUTION AT 21DEGREES C OVER 2-3 WEEKS., PH 8.50, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.70000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.70000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 ALA B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 ALA C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 465 GLU C 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ALA C 8 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG C 14 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 44 36.91 -86.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A2009 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A2010 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2011 DISTANCE = 9.71 ANGSTROMS REMARK 525 HOH A2012 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A2023 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A2027 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH A2028 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH C2002 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH C2003 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH C2004 DISTANCE = 8.75 ANGSTROMS REMARK 525 HOH C2005 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH C2006 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH C2007 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH C2008 DISTANCE = 9.79 ANGSTROMS REMARK 525 HOH C2011 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH C2012 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH C2014 DISTANCE = 10.46 ANGSTROMS REMARK 525 HOH C2015 DISTANCE = 12.13 ANGSTROMS REMARK 525 HOH C2016 DISTANCE = 10.11 ANGSTROMS REMARK 525 HOH C2017 DISTANCE = 10.13 ANGSTROMS REMARK 525 HOH C2023 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH C2029 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH C2032 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH C2034 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C2038 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH C2045 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH C2046 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH C2047 DISTANCE = 8.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1046 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 11 OE22 REMARK 620 2 CGU A 15 OE12 93.0 REMARK 620 3 HOH A2008 O 87.9 88.6 REMARK 620 4 HOH C2013 O 94.7 171.8 88.8 REMARK 620 5 CGU A 15 OE22 175.4 82.5 93.1 89.9 REMARK 620 6 CGU A 11 OE12 86.6 99.0 170.8 84.3 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1045 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU B 11 OE22 REMARK 620 2 CGU B 15 OE22 171.5 REMARK 620 3 CGU B 15 OE12 89.9 84.7 REMARK 620 4 HOH C2003 O 93.5 92.6 172.9 REMARK 620 5 HOH C2019 O 92.3 94.3 90.4 83.2 REMARK 620 6 CGU B 11 OE12 83.2 91.3 99.7 86.9 168.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1047 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU B 18 OE22 REMARK 620 2 ASP B 24 OD2 90.9 REMARK 620 3 HOH C2064 O 176.6 87.4 REMARK 620 4 CGU C 25 OE22 87.2 98.0 90.2 REMARK 620 5 HOH B2022 O 89.4 84.3 93.4 175.9 REMARK 620 6 CGU C 25 OE12 90.9 174.0 91.1 87.8 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1046 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU B 18 OE21 REMARK 620 2 HOH B2037 O 90.6 REMARK 620 3 HOH B2017 O 91.7 90.1 REMARK 620 4 ASP B 24 OD1 89.5 83.5 173.5 REMARK 620 5 HOH B2035 O 178.3 88.6 89.8 89.0 REMARK 620 6 CGU C 25 OE22 94.8 174.2 91.9 94.4 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1048 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU C 15 OE22 REMARK 620 2 CGU C 15 OE12 84.8 REMARK 620 3 CGU C 11 OE12 91.4 100.1 REMARK 620 4 HOH A2021 O 90.0 173.4 84.1 REMARK 620 5 HOH A2031 O 92.1 88.4 171.0 87.7 REMARK 620 6 CGU C 11 OE22 173.1 89.0 86.7 96.4 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1049 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU C 18 OE11 REMARK 620 2 HOH C2020 O 104.4 REMARK 620 3 HOH C2009 O 110.4 107.4 REMARK 620 4 HOH C2036 O 70.3 80.8 170.9 REMARK 620 5 HOH C2021 O 93.9 154.9 81.2 89.7 REMARK 620 6 HOH C2022 O 160.6 79.3 86.0 91.8 77.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1046 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C2068 O REMARK 620 2 CGU B 25 OE12 89.6 REMARK 620 3 CGU B 25 OE22 176.1 88.2 REMARK 620 4 CGU C 18 OE22 89.1 92.1 87.7 REMARK 620 5 HOH C2067 O 92.5 92.4 90.9 175.2 REMARK 620 6 ASP C 24 OD2 83.1 172.7 99.1 88.4 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1047 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU C 18 OE21 REMARK 620 2 ASP C 24 OD1 88.5 REMARK 620 3 CGU B 25 OE22 92.1 92.2 REMARK 620 4 HOH C2044 O 90.6 175.8 91.9 REMARK 620 5 HOH C2074 O 177.4 89.3 86.7 91.7 REMARK 620 6 HOH C2066 O 90.7 83.1 174.5 92.8 90.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1046 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1045 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1046 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1047 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1046 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1047 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1048 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1049 DBREF 1VZM A 1 45 UNP Q800Y1 OSTCN_ARGRE 53 97 DBREF 1VZM B 1 45 UNP Q800Y1 OSTCN_ARGRE 53 97 DBREF 1VZM C 1 45 UNP Q800Y1 OSTCN_ARGRE 53 97 SEQRES 1 A 45 ALA ALA LYS GLU LEU THR LEU ALA GLN THR CGU SER LEU SEQRES 2 A 45 ARG CGU VAL CYS CGU THR ASN MET ALA CYS ASP CGU MET SEQRES 3 A 45 ALA ASP ALA GLN GLY ILE VAL ALA ALA TYR GLN ALA PHE SEQRES 4 A 45 TYR GLY PRO ILE PRO PHE SEQRES 1 B 45 ALA ALA LYS GLU LEU THR LEU ALA GLN THR CGU SER LEU SEQRES 2 B 45 ARG CGU VAL CYS CGU THR ASN MET ALA CYS ASP CGU MET SEQRES 3 B 45 ALA ASP ALA GLN GLY ILE VAL ALA ALA TYR GLN ALA PHE SEQRES 4 B 45 TYR GLY PRO ILE PRO PHE SEQRES 1 C 45 ALA ALA LYS GLU LEU THR LEU ALA GLN THR CGU SER LEU SEQRES 2 C 45 ARG CGU VAL CYS CGU THR ASN MET ALA CYS ASP CGU MET SEQRES 3 C 45 ALA ASP ALA GLN GLY ILE VAL ALA ALA TYR GLN ALA PHE SEQRES 4 C 45 TYR GLY PRO ILE PRO PHE MODRES 1VZM CGU A 11 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU A 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU A 18 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU A 25 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU B 11 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU B 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU B 18 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU B 25 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU C 11 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU C 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU C 18 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1VZM CGU C 25 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU A 11 12 HET CGU A 15 12 HET CGU A 18 20 HET CGU A 25 12 HET CGU B 11 12 HET CGU B 15 12 HET CGU B 18 12 HET CGU B 25 12 HET CGU C 11 12 HET CGU C 15 12 HET CGU C 18 12 HET CGU C 25 12 HET MG A1046 1 HET MG B1045 1 HET MG B1046 1 HET MG B1047 1 HET MG C1046 1 HET MG C1047 1 HET MG C1048 1 HET MG C1049 1 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM MG MAGNESIUM ION FORMUL 1 CGU 12(C6 H9 N O6) FORMUL 4 MG 8(MG 2+) FORMUL 12 HOH *191(H2 O) HELIX 1 1 THR A 6 CGU A 18 1 13 HELIX 2 2 ASN A 20 ALA A 29 1 10 HELIX 3 3 GLY A 31 GLY A 41 1 11 HELIX 4 4 THR B 6 CGU B 18 1 13 HELIX 5 5 ASN B 20 ALA B 29 1 10 HELIX 6 6 GLY B 31 GLY B 41 1 11 HELIX 7 7 THR C 6 CGU C 18 1 13 HELIX 8 8 ASN C 20 ALA C 29 1 10 HELIX 9 8 GLY C 31 GLY C 41 1 11 SSBOND 1 CYS A 17 CYS A 23 1555 1555 2.03 SSBOND 2 CYS B 17 CYS B 23 1555 1555 2.04 SSBOND 3 CYS C 17 CYS C 23 1555 1555 3.00 LINK C THR A 10 N CGU A 11 1555 1555 1.35 LINK C CGU A 11 N SER A 12 1555 1555 1.34 LINK OE22 CGU A 11 MG MG A1046 1555 1555 2.04 LINK C ARG A 14 N CGU A 15 1555 1555 1.31 LINK C CGU A 15 N VAL A 16 1555 1555 1.33 LINK OE12 CGU A 15 MG MG A1046 1555 1555 1.96 LINK C CYS A 17 N CGU A 18 1555 1555 1.32 LINK C CGU A 18 N THR A 19 1555 1555 1.35 LINK C ASP A 24 N CGU A 25 1555 1555 1.34 LINK C CGU A 25 N MET A 26 1555 1555 1.33 LINK MG MG A1046 O HOH A2008 1555 1555 2.16 LINK MG MG A1046 O HOH C2013 1555 4555 2.14 LINK MG MG A1046 OE22 CGU A 15 1555 1555 2.07 LINK MG MG A1046 OE12 CGU A 11 1555 1555 2.08 LINK C THR B 10 N CGU B 11 1555 1555 1.33 LINK C CGU B 11 N SER B 12 1555 1555 1.33 LINK OE22 CGU B 11 MG MG B1045 1555 1555 2.04 LINK C ARG B 14 N CGU B 15 1555 1555 1.33 LINK OE22 CGU B 15 MG MG B1045 1555 1555 2.02 LINK C CGU B 15 N VAL B 16 1555 1555 1.34 LINK OE12 CGU B 15 MG MG B1045 1555 1555 2.01 LINK C CYS B 17 N CGU B 18 1555 1555 1.34 LINK C CGU B 18 N THR B 19 1555 1555 1.34 LINK OE22 CGU B 18 MG MG B1047 1555 1555 2.02 LINK C ASP B 24 N CGU B 25 1555 1555 1.34 LINK C CGU B 25 N MET B 26 1555 1555 1.35 LINK MG MG B1045 O HOH C2003 1555 3565 2.14 LINK MG MG B1045 O HOH C2019 1555 3565 2.11 LINK MG MG B1045 OE12 CGU B 11 1555 1555 2.13 LINK MG MG B1046 OE21 CGU B 18 1555 1555 2.06 LINK MG MG B1046 O HOH B2037 1555 1555 2.14 LINK MG MG B1046 O HOH B2017 1555 1555 2.10 LINK MG MG B1046 OD1 ASP B 24 1555 1555 2.00 LINK MG MG B1046 O HOH B2035 1555 1555 2.13 LINK MG MG B1046 OE22 CGU C 25 1555 1555 2.11 LINK MG MG B1047 OD2 ASP B 24 1555 1555 2.05 LINK MG MG B1047 O HOH C2064 1555 1555 2.15 LINK MG MG B1047 OE22 CGU C 25 1555 1555 2.18 LINK MG MG B1047 O HOH B2022 1555 1555 2.04 LINK MG MG B1047 OE12 CGU C 25 1555 1555 2.09 LINK C THR C 10 N CGU C 11 1555 1555 1.33 LINK C CGU C 11 N SER C 12 1555 1555 1.32 LINK C ARG C 14 N CGU C 15 1555 1555 1.35 LINK C CGU C 15 N VAL C 16 1555 1555 1.34 LINK OE22 CGU C 15 MG MG C1048 1555 1555 2.03 LINK C CYS C 17 N CGU C 18 1555 1555 1.33 LINK OE11 CGU C 18 MG MG C1049 1555 1555 1.75 LINK C CGU C 18 N THR C 19 1555 1555 1.35 LINK C ASP C 24 N CGU C 25 1555 1555 1.33 LINK C CGU C 25 N MET C 26 1555 1555 1.33 LINK MG MG C1046 O HOH C2068 1555 1555 2.05 LINK MG MG C1046 OE12 CGU B 25 1555 1555 2.09 LINK MG MG C1046 OE22 CGU B 25 1555 1555 2.05 LINK MG MG C1046 OE22 CGU C 18 1555 1555 2.09 LINK MG MG C1046 O HOH C2067 1555 1555 2.14 LINK MG MG C1046 OD2 ASP C 24 1555 1555 2.05 LINK MG MG C1047 OE21 CGU C 18 1555 1555 2.09 LINK MG MG C1047 OD1 ASP C 24 1555 1555 2.03 LINK MG MG C1047 OE22 CGU B 25 1555 1555 2.15 LINK MG MG C1047 O HOH C2044 1555 1555 2.01 LINK MG MG C1047 O HOH C2074 1555 1555 2.11 LINK MG MG C1047 O HOH C2066 1555 1555 2.09 LINK MG MG C1048 OE12 CGU C 15 1555 1555 2.09 LINK MG MG C1048 OE12 CGU C 11 1555 1555 2.05 LINK MG MG C1048 O HOH A2021 1555 4555 2.10 LINK MG MG C1048 O HOH A2031 1555 4555 2.13 LINK MG MG C1048 OE22 CGU C 11 1555 1555 2.12 LINK MG MG C1049 O HOH C2020 1555 1555 1.85 LINK MG MG C1049 O HOH C2009 1555 1555 2.14 LINK MG MG C1049 O HOH C2036 1555 1555 2.22 LINK MG MG C1049 O HOH C2021 1555 1555 2.12 LINK MG MG C1049 O HOH C2022 1555 1555 2.35 SITE 1 AC1 4 CGU A 11 CGU A 15 HOH A2008 HOH C2013 SITE 1 AC2 4 CGU B 11 CGU B 15 HOH C2003 HOH C2019 SITE 1 AC3 7 CGU B 18 ASP B 24 MG B1047 HOH B2017 SITE 2 AC3 7 HOH B2035 HOH B2037 CGU C 25 SITE 1 AC4 6 CGU B 18 ASP B 24 MG B1046 HOH B2022 SITE 2 AC4 6 CGU C 25 HOH C2064 SITE 1 AC5 6 CGU B 25 CGU C 18 ASP C 24 MG C1047 SITE 2 AC5 6 HOH C2067 HOH C2068 SITE 1 AC6 7 CGU B 25 CGU C 18 ASP C 24 MG C1046 SITE 2 AC6 7 HOH C2044 HOH C2066 HOH C2074 SITE 1 AC7 4 HOH A2021 HOH A2031 CGU C 11 CGU C 15 SITE 1 AC8 6 CGU C 18 HOH C2009 HOH C2020 HOH C2021 SITE 2 AC8 6 HOH C2022 HOH C2036 CRYST1 48.700 48.700 119.100 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020534 0.011855 0.000000 0.00000 SCALE2 0.000000 0.023710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008396 0.00000 MTRIX1 1 0.453120 -0.552410 0.699660 23.09228 1 MTRIX2 1 0.615610 -0.373750 -0.693780 52.35415 1 MTRIX3 1 0.644750 0.745090 0.170710 -18.95822 1 MTRIX1 2 0.070910 -0.731130 -0.678550 39.59732 1 MTRIX2 2 -0.093660 -0.682130 0.725200 49.27197 1 MTRIX3 2 -0.993080 0.012130 -0.116850 4.66851 1