PDB Short entry for 1W3B HEADER TRANSFERASE 14-JUL-04 1W3B TITLE THE SUPERHELICAL TPR DOMAIN OF O-LINKED GLCNAC TRANSFERASE TITLE 2 REVEALS STRUCTURAL SIMILARITIES TO IMPORTIN ALPHA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE--PEPTIDE COMPND 3 N-ACETYLGLUCOSAMINYLTRANSFERASE 110; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: TPR DOMAIN, RESIDUES 16-400; COMPND 6 SYNONYM: O-GLCNAC TRANSFERASE P110 SUBUNIT; COMPND 7 EC: 2.4.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: ISOFORM 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-BASED VECTOR KEYWDS OGT, GLCNAC, NUCLEOPORIN, O-LINKED GLYCOSYLATION, TPR KEYWDS 2 REPEAT, PROTEIN BINDING, SIGNAL TRANSDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.JINEK,J.REHWINKEL,B.D.LAZARUS,E.IZAURRALDE,J.A.HANOVER, AUTHOR 2 E.CONTI REVDAT 3 24-FEB-09 1W3B 1 VERSN REVDAT 2 15-JUN-05 1W3B 1 JRNL REVDAT 1 09-SEP-04 1W3B 0 JRNL AUTH M.JINEK,J.REHWINKEL,B.D.LAZARUS,E.IZAURRALDE, JRNL AUTH 2 J.A.HANOVER,E.CONTI JRNL TITL THE SUPERHELICAL TPR-REPEAT DOMAIN OF O-LINKED JRNL TITL 2 GLCNAC TRANSFERASE EXHIBITS STRUCTURAL JRNL TITL 3 SIMILARITIES TO IMPORTIN ALPHA JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 1001 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15361863 JRNL DOI 10.1038/NSMB833 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 200.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 27841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2594 REMARK 3 FREE R VALUE : 0.2974 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.8 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.470 REMARK 3 B22 (A**2) : -7.991 REMARK 3 B33 (A**2) : 5.521 REMARK 3 B12 (A**2) : -8.855 REMARK 3 B13 (A**2) : -4.051 REMARK 3 B23 (A**2) : -15.159 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007478 REMARK 3 BOND ANGLES (DEGREES) : 1.25408 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.337687 REMARK 3 BSOL : 67.9029 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W3B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-04. REMARK 100 THE PDBE ID CODE IS EBI-20459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES-NA/HCL PH 7.5 0.2M REMARK 280 CACL2 36% PEG 400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS:THE AUTHORS HAVE INDICATED THAT THERE IS REMARK 300 EXPERIMENTALEVIDENCE AVAILABLE FROM GEL FILTRATION REMARK 300 EXPERIMENTS THATTHIS PROTEIN IS A CONSTITUTIVE DIMER REMARK 300 IN SOLUTION, WHICHIS DISCUSSED IN THE JOURNAL REMARK 300 REFERENCE ABOVE. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 320 REMARK 465 ASN B 321 REMARK 465 ASN B 322 REMARK 465 LEU B 323 REMARK 465 ALA B 324 REMARK 465 ASN B 325 REMARK 465 ILE B 326 REMARK 465 LYS B 327 REMARK 465 ARG B 328 REMARK 465 GLU B 329 REMARK 465 GLN B 330 REMARK 465 GLY B 331 REMARK 465 ASN B 332 REMARK 465 ILE B 333 REMARK 465 GLU B 334 REMARK 465 GLU B 335 REMARK 465 ALA B 336 REMARK 465 VAL B 337 REMARK 465 ARG B 338 REMARK 465 LEU B 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 15 CG SD CE REMARK 470 LEU A 17 CG CD1 CD2 REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 22 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 23 CG CD OE1 NE2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 33 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 37 CG CD1 CD2 REMARK 470 ARG A 39 NE CZ NH1 NH2 REMARK 470 GLN A 40 CD OE1 NE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 LEU A 49 CG CD1 CD2 REMARK 470 LEU A 51 CG CD1 CD2 REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 61 CG CD1 CD2 REMARK 470 PHE A 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ASN A 179 CG OD1 ND2 REMARK 470 VAL A 190 CG1 CG2 REMARK 470 LEU A 242 CG CD1 CD2 REMARK 470 ILE A 269 CG1 CG2 CD1 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ILE A 326 CG1 CG2 CD1 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 GLU A 349 CG CD OE1 OE2 REMARK 470 GLN A 363 CG CD OE1 NE2 REMARK 470 LEU A 395 CG CD1 CD2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 ARG B 59 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ARG B 107 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 134 CG CD OE1 NE2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 ASN B 179 CG OD1 ND2 REMARK 470 SER B 185 OG REMARK 470 VAL B 190 CG1 CG2 REMARK 470 LYS B 226 CE NZ REMARK 470 VAL B 258 CG1 CG2 REMARK 470 ILE B 269 CG1 CG2 CD1 REMARK 470 TYR B 272 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 LEU B 278 CG CD1 CD2 REMARK 470 GLN B 279 CG CD OE1 NE2 REMARK 470 HIS B 281 CG ND1 CD2 CE1 NE2 REMARK 470 PHE B 282 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 284 CG OD1 OD2 REMARK 470 TYR B 286 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 288 CG OD1 ND2 REMARK 470 LEU B 289 CG CD1 CD2 REMARK 470 ASN B 291 CG OD1 ND2 REMARK 470 LEU B 293 CG CD1 CD2 REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 CYS B 305 SG REMARK 470 TYR B 306 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 311 CG CD NE CZ NH1 NH2 REMARK 470 SER B 319 OG REMARK 470 LYS B 342 CG CD CE NZ REMARK 470 GLU B 345 CG CD OE1 OE2 REMARK 470 PHE B 347 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 349 CG CD OE1 OE2 REMARK 470 PHE B 350 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 355 OG REMARK 470 LEU B 357 CG CD1 CD2 REMARK 470 VAL B 360 CG1 CG2 REMARK 470 LEU B 361 CG CD1 CD2 REMARK 470 GLN B 362 CG CD OE1 NE2 REMARK 470 GLN B 363 CG CD OE1 NE2 REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 LEU B 367 CG CD1 CD2 REMARK 470 GLN B 368 CG CD OE1 NE2 REMARK 470 GLU B 369 CG CD OE1 OE2 REMARK 470 MET B 372 CG SD CE REMARK 470 LYS B 375 CG CD CE NZ REMARK 470 GLU B 376 CD OE1 OE2 REMARK 470 ILE B 378 CG1 CG2 CD1 REMARK 470 ARG B 379 CG CD NE CZ NH1 NH2 REMARK 470 THR B 383 OG1 CG2 REMARK 470 SER B 389 OG REMARK 470 ASN B 393 CG OD1 ND2 REMARK 470 THR B 394 OG1 CG2 REMARK 470 LEU B 395 CG CD1 CD2 REMARK 470 LYS B 396 CG CD CE NZ REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 MET B 398 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 58.70 -96.52 REMARK 500 PRO A 42 33.54 -68.18 REMARK 500 ASP A 43 35.63 -142.94 REMARK 500 CYS A 58 33.58 -94.42 REMARK 500 GLN A 74 -78.69 -73.03 REMARK 500 ALA A 121 -76.11 -47.74 REMARK 500 ALA A 139 -16.03 -48.00 REMARK 500 SER A 151 -71.00 -49.38 REMARK 500 ASP A 152 -32.87 -35.24 REMARK 500 ALA A 159 -5.87 -50.56 REMARK 500 ARG A 162 85.88 -56.89 REMARK 500 THR A 176 -70.47 -58.55 REMARK 500 ALA A 181 -72.58 -44.14 REMARK 500 VAL A 182 -33.57 -36.90 REMARK 500 TRP A 184 -71.65 -54.81 REMARK 500 ALA A 207 -26.03 -37.80 REMARK 500 PRO A 212 18.37 -61.71 REMARK 500 LEU A 215 -72.84 -47.33 REMARK 500 ILE A 230 60.79 -119.68 REMARK 500 ALA A 234 -4.52 -50.47 REMARK 500 ALA A 237 -80.75 -57.74 REMARK 500 TYR A 238 -33.16 -39.71 REMARK 500 ALA A 249 -74.92 -57.66 REMARK 500 VAL A 250 -33.41 -34.87 REMARK 500 LEU A 264 69.79 -59.54 REMARK 500 LEU A 278 18.52 -67.77 REMARK 500 GLN A 279 58.59 177.02 REMARK 500 PRO A 280 -53.05 -27.86 REMARK 500 PRO A 283 -79.12 -39.37 REMARK 500 ASP A 284 -35.85 -30.38 REMARK 500 CYS A 287 -5.77 -45.66 REMARK 500 SER A 298 68.28 -56.52 REMARK 500 PRO A 314 -2.72 -46.38 REMARK 500 ASN A 332 70.85 -51.18 REMARK 500 PHE A 347 81.64 -163.87 REMARK 500 ALA A 352 -75.57 -44.42 REMARK 500 ALA A 353 -37.24 -36.00 REMARK 500 LYS A 366 58.14 -90.20 REMARK 500 SER A 381 67.16 -166.20 REMARK 500 PRO A 382 -5.51 -38.99 REMARK 500 PHE A 384 99.64 -65.56 REMARK 500 PRO B 14 -5.06 -49.98 REMARK 500 ASP B 26 53.42 -67.54 REMARK 500 GLU B 41 77.41 -119.79 REMARK 500 PRO B 42 -6.81 -55.52 REMARK 500 ASN B 44 102.40 -51.08 REMARK 500 LEU B 51 -72.78 -50.62 REMARK 500 SER B 52 -56.47 -29.79 REMARK 500 ARG B 59 6.00 46.78 REMARK 500 ASN B 75 91.07 -178.64 REMARK 500 PRO B 76 8.35 -66.86 REMARK 500 ASP B 128 95.43 -66.79 REMARK 500 PHE B 180 85.22 -160.24 REMARK 500 LEU B 215 -83.17 -45.08 REMARK 500 SER B 245 76.46 -154.01 REMARK 500 PRO B 246 -14.08 -49.79 REMARK 500 HIS B 248 105.67 -52.78 REMARK 500 LEU B 264 63.33 -117.78 REMARK 500 GLN B 279 87.75 -169.93 REMARK 500 PRO B 280 19.72 -54.40 REMARK 500 PHE B 282 90.24 -39.23 REMARK 500 ALA B 317 -0.83 71.97 REMARK 500 GLN B 363 34.34 -81.18 REMARK 500 LYS B 366 49.24 -91.40 REMARK 500 THR B 383 38.29 -98.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 397 O REMARK 620 2 GLU A 397 OE2 52.3 REMARK 620 3 GLU B 97 OE1 102.2 55.5 REMARK 620 4 GLU B 97 OE2 103.6 54.6 45.0 REMARK 620 5 GLU B 100 OE2 54.4 68.3 76.0 113.1 REMARK 620 6 ASP A 400 OD1 55.6 63.4 110.7 74.9 109.4 REMARK 620 7 ASP A 400 OXT 115.1 124.5 127.1 88.9 156.8 67.9 REMARK 620 N 1 2 3 4 5 6 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1001 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PRO14 AND MET15 IN BOTH CHAINS A AND B ARE DERIVED FROM THE REMARK 999 EXPRESSION PLASMID AND THEREFORE DO NOT CORRESPOND TO THE REMARK 999 UNIPROT DATABASE ENTRY O15294 DBREF 1W3B A 13 15 PDB 1W3B 1W3B 13 15 DBREF 1W3B A 16 400 UNP O15294 OGT1_HUMAN 16 400 DBREF 1W3B B 13 15 PDB 1W3B 1W3B 13 15 DBREF 1W3B B 16 400 UNP O15294 OGT1_HUMAN 16 400 SEQRES 1 A 388 GLY PRO MET GLU LEU ALA HIS ARG GLU TYR GLN ALA GLY SEQRES 2 A 388 ASP PHE GLU ALA ALA GLU ARG HIS CYS MET GLN LEU TRP SEQRES 3 A 388 ARG GLN GLU PRO ASP ASN THR GLY VAL LEU LEU LEU LEU SEQRES 4 A 388 SER SER ILE HIS PHE GLN CYS ARG ARG LEU ASP ARG SER SEQRES 5 A 388 ALA HIS PHE SER THR LEU ALA ILE LYS GLN ASN PRO LEU SEQRES 6 A 388 LEU ALA GLU ALA TYR SER ASN LEU GLY ASN VAL TYR LYS SEQRES 7 A 388 GLU ARG GLY GLN LEU GLN GLU ALA ILE GLU HIS TYR ARG SEQRES 8 A 388 HIS ALA LEU ARG LEU LYS PRO ASP PHE ILE ASP GLY TYR SEQRES 9 A 388 ILE ASN LEU ALA ALA ALA LEU VAL ALA ALA GLY ASP MET SEQRES 10 A 388 GLU GLY ALA VAL GLN ALA TYR VAL SER ALA LEU GLN TYR SEQRES 11 A 388 ASN PRO ASP LEU TYR CYS VAL ARG SER ASP LEU GLY ASN SEQRES 12 A 388 LEU LEU LYS ALA LEU GLY ARG LEU GLU GLU ALA LYS ALA SEQRES 13 A 388 CYS TYR LEU LYS ALA ILE GLU THR GLN PRO ASN PHE ALA SEQRES 14 A 388 VAL ALA TRP SER ASN LEU GLY CYS VAL PHE ASN ALA GLN SEQRES 15 A 388 GLY GLU ILE TRP LEU ALA ILE HIS HIS PHE GLU LYS ALA SEQRES 16 A 388 VAL THR LEU ASP PRO ASN PHE LEU ASP ALA TYR ILE ASN SEQRES 17 A 388 LEU GLY ASN VAL LEU LYS GLU ALA ARG ILE PHE ASP ARG SEQRES 18 A 388 ALA VAL ALA ALA TYR LEU ARG ALA LEU SER LEU SER PRO SEQRES 19 A 388 ASN HIS ALA VAL VAL HIS GLY ASN LEU ALA CYS VAL TYR SEQRES 20 A 388 TYR GLU GLN GLY LEU ILE ASP LEU ALA ILE ASP THR TYR SEQRES 21 A 388 ARG ARG ALA ILE GLU LEU GLN PRO HIS PHE PRO ASP ALA SEQRES 22 A 388 TYR CYS ASN LEU ALA ASN ALA LEU LYS GLU LYS GLY SER SEQRES 23 A 388 VAL ALA GLU ALA GLU ASP CYS TYR ASN THR ALA LEU ARG SEQRES 24 A 388 LEU CYS PRO THR HIS ALA ASP SER LEU ASN ASN LEU ALA SEQRES 25 A 388 ASN ILE LYS ARG GLU GLN GLY ASN ILE GLU GLU ALA VAL SEQRES 26 A 388 ARG LEU TYR ARG LYS ALA LEU GLU VAL PHE PRO GLU PHE SEQRES 27 A 388 ALA ALA ALA HIS SER ASN LEU ALA SER VAL LEU GLN GLN SEQRES 28 A 388 GLN GLY LYS LEU GLN GLU ALA LEU MET HIS TYR LYS GLU SEQRES 29 A 388 ALA ILE ARG ILE SER PRO THR PHE ALA ASP ALA TYR SER SEQRES 30 A 388 ASN MET GLY ASN THR LEU LYS GLU MET GLN ASP SEQRES 1 B 388 GLY PRO MET GLU LEU ALA HIS ARG GLU TYR GLN ALA GLY SEQRES 2 B 388 ASP PHE GLU ALA ALA GLU ARG HIS CYS MET GLN LEU TRP SEQRES 3 B 388 ARG GLN GLU PRO ASP ASN THR GLY VAL LEU LEU LEU LEU SEQRES 4 B 388 SER SER ILE HIS PHE GLN CYS ARG ARG LEU ASP ARG SER SEQRES 5 B 388 ALA HIS PHE SER THR LEU ALA ILE LYS GLN ASN PRO LEU SEQRES 6 B 388 LEU ALA GLU ALA TYR SER ASN LEU GLY ASN VAL TYR LYS SEQRES 7 B 388 GLU ARG GLY GLN LEU GLN GLU ALA ILE GLU HIS TYR ARG SEQRES 8 B 388 HIS ALA LEU ARG LEU LYS PRO ASP PHE ILE ASP GLY TYR SEQRES 9 B 388 ILE ASN LEU ALA ALA ALA LEU VAL ALA ALA GLY ASP MET SEQRES 10 B 388 GLU GLY ALA VAL GLN ALA TYR VAL SER ALA LEU GLN TYR SEQRES 11 B 388 ASN PRO ASP LEU TYR CYS VAL ARG SER ASP LEU GLY ASN SEQRES 12 B 388 LEU LEU LYS ALA LEU GLY ARG LEU GLU GLU ALA LYS ALA SEQRES 13 B 388 CYS TYR LEU LYS ALA ILE GLU THR GLN PRO ASN PHE ALA SEQRES 14 B 388 VAL ALA TRP SER ASN LEU GLY CYS VAL PHE ASN ALA GLN SEQRES 15 B 388 GLY GLU ILE TRP LEU ALA ILE HIS HIS PHE GLU LYS ALA SEQRES 16 B 388 VAL THR LEU ASP PRO ASN PHE LEU ASP ALA TYR ILE ASN SEQRES 17 B 388 LEU GLY ASN VAL LEU LYS GLU ALA ARG ILE PHE ASP ARG SEQRES 18 B 388 ALA VAL ALA ALA TYR LEU ARG ALA LEU SER LEU SER PRO SEQRES 19 B 388 ASN HIS ALA VAL VAL HIS GLY ASN LEU ALA CYS VAL TYR SEQRES 20 B 388 TYR GLU GLN GLY LEU ILE ASP LEU ALA ILE ASP THR TYR SEQRES 21 B 388 ARG ARG ALA ILE GLU LEU GLN PRO HIS PHE PRO ASP ALA SEQRES 22 B 388 TYR CYS ASN LEU ALA ASN ALA LEU LYS GLU LYS GLY SER SEQRES 23 B 388 VAL ALA GLU ALA GLU ASP CYS TYR ASN THR ALA LEU ARG SEQRES 24 B 388 LEU CYS PRO THR HIS ALA ASP SER LEU ASN ASN LEU ALA SEQRES 25 B 388 ASN ILE LYS ARG GLU GLN GLY ASN ILE GLU GLU ALA VAL SEQRES 26 B 388 ARG LEU TYR ARG LYS ALA LEU GLU VAL PHE PRO GLU PHE SEQRES 27 B 388 ALA ALA ALA HIS SER ASN LEU ALA SER VAL LEU GLN GLN SEQRES 28 B 388 GLN GLY LYS LEU GLN GLU ALA LEU MET HIS TYR LYS GLU SEQRES 29 B 388 ALA ILE ARG ILE SER PRO THR PHE ALA ASP ALA TYR SER SEQRES 30 B 388 ASN MET GLY ASN THR LEU LYS GLU MET GLN ASP HET CA A1001 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *27(H2 O1) HELIX 1 1 GLU A 16 ALA A 24 1 9 HELIX 2 2 PHE A 27 GLN A 40 1 14 HELIX 3 3 THR A 45 CYS A 58 1 14 HELIX 4 4 LEU A 61 GLN A 74 1 14 HELIX 5 5 ALA A 79 ARG A 92 1 14 HELIX 6 6 LEU A 95 LEU A 108 1 14 HELIX 7 7 ILE A 113 ALA A 126 1 14 HELIX 8 8 MET A 129 TYR A 142 1 14 HELIX 9 9 TYR A 147 LEU A 160 1 14 HELIX 10 10 LEU A 163 THR A 176 1 14 HELIX 11 11 ALA A 181 GLN A 194 1 14 HELIX 12 12 ILE A 197 LEU A 210 1 14 HELIX 13 13 LEU A 215 ALA A 228 1 14 HELIX 14 14 PHE A 231 LEU A 244 1 14 HELIX 15 15 ALA A 249 GLN A 262 1 14 HELIX 16 16 ILE A 265 LEU A 278 1 14 HELIX 17 17 PRO A 283 LYS A 296 1 14 HELIX 18 18 VAL A 299 LEU A 312 1 14 HELIX 19 19 ALA A 317 GLN A 330 1 14 HELIX 20 20 ILE A 333 VAL A 346 1 14 HELIX 21 21 ALA A 351 GLN A 364 1 14 HELIX 22 22 LEU A 367 ILE A 380 1 14 HELIX 23 23 ALA A 385 MET A 398 1 14 HELIX 24 24 PRO B 14 ALA B 24 1 11 HELIX 25 25 PHE B 27 GLN B 40 1 14 HELIX 26 26 THR B 45 CYS B 58 1 14 HELIX 27 27 LEU B 61 GLN B 74 1 14 HELIX 28 28 ALA B 79 ARG B 92 1 14 HELIX 29 29 LEU B 95 LEU B 108 1 14 HELIX 30 30 ILE B 113 ALA B 126 1 14 HELIX 31 31 MET B 129 TYR B 142 1 14 HELIX 32 32 TYR B 147 LEU B 160 1 14 HELIX 33 33 LEU B 163 THR B 176 1 14 HELIX 34 34 ALA B 181 GLN B 194 1 14 HELIX 35 35 ILE B 197 LEU B 210 1 14 HELIX 36 36 LEU B 215 ALA B 228 1 14 HELIX 37 37 PHE B 231 LEU B 244 1 14 HELIX 38 38 ALA B 249 GLN B 262 1 14 HELIX 39 39 ILE B 265 LEU B 278 1 14 HELIX 40 40 PRO B 283 LYS B 296 1 14 HELIX 41 41 VAL B 299 LEU B 312 1 14 HELIX 42 42 TYR B 340 VAL B 346 1 7 HELIX 43 43 ALA B 351 GLN B 364 1 14 HELIX 44 44 LEU B 367 ILE B 380 1 14 HELIX 45 45 ALA B 385 MET B 398 1 14 LINK CA CA A1001 O GLU A 397 1555 1555 2.93 LINK CA CA A1001 OE2 GLU A 397 1555 1555 2.78 LINK CA CA A1001 OE1 GLU B 97 1555 1656 2.72 LINK CA CA A1001 OE2 GLU B 97 1555 1656 2.99 LINK CA CA A1001 OE2 GLU B 100 1555 1656 2.98 LINK CA CA A1001 OD1 ASP A 400 1555 1555 2.61 LINK CA CA A1001 OXT ASP A 400 1555 1555 2.87 SITE 1 AC1 4 GLU A 397 ASP A 400 GLU B 97 GLU B 100 CRYST1 64.320 75.510 77.670 105.08 105.14 110.28 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015547 0.005745 0.006976 0.00000 SCALE2 0.000000 0.014118 0.005931 0.00000 SCALE3 0.000000 0.000000 0.014467 0.00000