PDB Short entry for 1W7J HEADER MOTOR PROTEIN 03-SEP-04 1W7J TITLE CRYSTAL STRUCTURE OF MYOSIN V MOTOR WITH ESSENTIAL LIGHT CHAIN + ADP- TITLE 2 BEFX - NEAR RIGOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN VA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOTOR DOMAIN, RESIDUES 1-792; COMPND 5 SYNONYM: MYOSIN 5A, DILUTE MYOSIN HEAVY CHAIN, NON-MUSCLE, MYOSIN COMPND 6 HEAVY CHAIN P190, MYOSIN-V, MYOSIN; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: ADP-BEFX; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MYOSIN LIGHT CHAIN 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 59-208; COMPND 13 SYNONYM: LIGHT CHAIN 1, SLOW-TWITCH MUSCLE A ISOFORM, MLC1SA, ALKALI; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS KEYWDS MOTOR PROTEIN, UNCONVENTIONAL MYOSIN, MYOSIN V, CHICKEN, MOLECULAR KEYWDS 2 MOTOR, ATPASE, ELC, IQ MOTIF, MUSCLE PROTEIN, ATP-BINDING, ACTIN- KEYWDS 3 BINDING, CALMODULIN-BINDING, MYOSIN, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR P.-D.COUREUX,H.L.SWEENEY,A.HOUDUSSE REVDAT 3 13-DEC-23 1W7J 1 LINK REVDAT 2 24-FEB-09 1W7J 1 VERSN REVDAT 1 22-FEB-05 1W7J 0 JRNL AUTH P.-D.COUREUX,H.L.SWEENEY,A.HOUDUSSE JRNL TITL THREE MYOSIN V STRUCTURES DELINEATE ESSENTIAL FEATURES OF JRNL TITL 2 CHEMO-MECHANICAL TRANSDUCTION JRNL REF EMBO J. V. 23 4527 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15510214 JRNL DOI 10.1038/SJ.EMBOJ.7600458 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 85999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 525 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1290014379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 84.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8000, 50 MM MES PH 6.3, 2 MM REMARK 280 DTT AND 2 MM NAN3, PH 6.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.84200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.99400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.84200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.99400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 595 REMARK 465 GLU A 596 REMARK 465 GLU A 597 REMARK 465 LYS A 598 REMARK 465 ALA A 599 REMARK 465 ILE A 600 REMARK 465 SER A 601 REMARK 465 PRO A 602 REMARK 465 THR A 603 REMARK 465 SER A 604 REMARK 465 ALA A 605 REMARK 465 THR A 606 REMARK 465 PRO A 607 REMARK 465 SER A 608 REMARK 465 GLY A 609 REMARK 465 ARG A 610 REMARK 465 VAL A 611 REMARK 465 PRO A 612 REMARK 465 LEU A 613 REMARK 465 SER A 614 REMARK 465 ARG A 615 REMARK 465 THR A 616 REMARK 465 PRO A 617 REMARK 465 VAL A 618 REMARK 465 LYS A 619 REMARK 465 PRO A 620 REMARK 465 ALA A 621 REMARK 465 LYS A 622 REMARK 465 ALA A 623 REMARK 465 ARG A 624 REMARK 465 PRO A 625 REMARK 465 GLY A 626 REMARK 465 GLN A 627 REMARK 465 THR A 628 REMARK 465 SER A 629 REMARK 465 LYS A 630 REMARK 465 GLU A 631 REMARK 465 HIS A 632 REMARK 465 LYS A 633 REMARK 465 GLY A 793 REMARK 465 ASP A 794 REMARK 465 ALA A 795 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 GLU B 3 REMARK 465 PHE B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 465 GLN B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 80 REMARK 465 ARG B 81 REMARK 465 GLY B 82 REMARK 465 GLN B 83 REMARK 465 GLY B 84 REMARK 465 THR B 85 REMARK 465 TYR B 86 REMARK 465 GLU B 87 REMARK 465 SER B 150 REMARK 465 VAL B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ARG A 41 NE CZ NH1 NH2 REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 THR A 56 OG1 CG2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ASN A 191 CG OD1 ND2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ARG A 278 CD NE CZ NH1 NH2 REMARK 470 ASP A 346 CG OD1 OD2 REMARK 470 ARG A 378 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 380 CG CD1 CD2 REMARK 470 THR A 382 OG1 CG2 REMARK 470 THR A 384 OG1 CG2 REMARK 470 GLU A 385 CG CD OE1 OE2 REMARK 470 THR A 386 OG1 CG2 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LYS A 428 CD CE NZ REMARK 470 GLU A 445 CD OE1 OE2 REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 LYS A 517 CD CE NZ REMARK 470 GLU A 566 CG CD OE1 OE2 REMARK 470 GLU A 574 CD OE1 OE2 REMARK 470 LYS A 578 CG CD CE NZ REMARK 470 LYS A 585 CG CD CE NZ REMARK 470 LYS A 587 CG CD CE NZ REMARK 470 GLN A 639 CG CD OE1 NE2 REMARK 470 LYS A 716 CG CD CE NZ REMARK 470 LYS A 718 CG CD CE NZ REMARK 470 ASP A 719 CG OD1 OD2 REMARK 470 LYS A 786 CD CE NZ REMARK 470 MET A 788 CG SD CE REMARK 470 ARG A 792 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 PHE B 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 22 CG1 CG2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 VAL B 51 CG1 CG2 REMARK 470 LEU B 52 CG CD1 CD2 REMARK 470 ASN B 54 CG OD1 ND2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 SER B 57 OG REMARK 470 ASP B 58 CG OD1 OD2 REMARK 470 LEU B 60 CG CD1 CD2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 SER B 62 OG REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 64 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 65 CG1 CG2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 PHE B 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 THR B 69 OG1 CG2 REMARK 470 LEU B 71 CG CD1 CD2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 TYR B 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 ARG B 94 NE CZ NH1 NH2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 161 O HOH A 2104 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 300 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 437 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 -10.18 81.16 REMARK 500 VAL A 21 -52.93 69.25 REMARK 500 LYS A 46 -111.52 45.37 REMARK 500 LYS A 55 -74.06 67.07 REMARK 500 PRO A 117 48.42 -90.30 REMARK 500 SER A 186 87.58 22.55 REMARK 500 SER A 188 -169.81 -168.52 REMARK 500 ASN A 258 -179.23 -64.61 REMARK 500 TYR A 439 128.89 -36.92 REMARK 500 PHE A 671 61.33 33.85 REMARK 500 ARG B 21 56.29 -112.19 REMARK 500 VAL B 22 -60.37 -162.65 REMARK 500 LYS B 61 59.29 -109.75 REMARK 500 SER B 62 -72.34 -171.51 REMARK 500 ALA B 78 44.92 -88.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2022 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1793 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 170 OG1 REMARK 620 2 SER A 218 OG 90.8 REMARK 620 3 ADP A1794 O2B 93.3 174.9 REMARK 620 4 BEF A1795 F2 173.3 85.9 90.3 REMARK 620 5 HOH A2277 O 86.7 89.8 93.5 87.4 REMARK 620 6 HOH A2517 O 94.0 85.1 91.6 91.6 174.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A1795 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A1794 O1B REMARK 620 2 BEF A1795 F1 115.1 REMARK 620 3 BEF A1795 F2 109.5 103.9 REMARK 620 4 BEF A1795 F3 116.6 106.8 103.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1793 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1794 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A1795 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OE9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYOSIN V NUCLEOTIDE- FREE REMARK 900 RELATED ID: 1W7I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYOSIN V MOTOR WITHOUT NUCLEOTIDE SOAKED IN 10 REMARK 900 MM MGADP DBREF 1W7J A 1 792 UNP Q02440 MY5A_CHICK 1 792 DBREF 1W7J A 793 795 PDB 1W7J 1W7J 793 795 DBREF 1W7J B 1 1 PDB 1W7J 1W7J 1 1 DBREF 1W7J B 2 151 UNP P14649 MLEY_HUMAN 59 208 SEQRES 1 A 795 MET ALA ALA SER GLU LEU TYR THR LYS TYR ALA ARG VAL SEQRES 2 A 795 TRP ILE PRO ASP PRO GLU GLU VAL TRP LYS SER ALA GLU SEQRES 3 A 795 LEU LEU LYS ASP TYR LYS PRO GLY ASP LYS VAL LEU GLN SEQRES 4 A 795 LEU ARG LEU GLU GLU GLY LYS ASP LEU GLU TYR CYS LEU SEQRES 5 A 795 ASP PRO LYS THR LYS GLU LEU PRO PRO LEU ARG ASN PRO SEQRES 6 A 795 ASP ILE LEU VAL GLY GLU ASN ASP LEU THR ALA LEU SER SEQRES 7 A 795 TYR LEU HIS GLU PRO ALA VAL LEU HIS ASN LEU LYS VAL SEQRES 8 A 795 ARG PHE ILE ASP SER LYS LEU ILE TYR THR TYR CYS GLY SEQRES 9 A 795 ILE VAL LEU VAL ALA ILE ASN PRO TYR GLU GLN LEU PRO SEQRES 10 A 795 ILE TYR GLY GLU ASP ILE ILE ASN ALA TYR SER GLY GLN SEQRES 11 A 795 ASN MET GLY ASP MET ASP PRO HIS ILE PHE ALA VAL ALA SEQRES 12 A 795 GLU GLU ALA TYR LYS GLN MET ALA ARG ASP GLU ARG ASN SEQRES 13 A 795 GLN SER ILE ILE VAL SER GLY GLU SER GLY ALA GLY LYS SEQRES 14 A 795 THR VAL SER ALA LYS TYR ALA MET ARG TYR PHE ALA THR SEQRES 15 A 795 VAL SER GLY SER ALA SER GLU ALA ASN VAL GLU GLU LYS SEQRES 16 A 795 VAL LEU ALA SER ASN PRO ILE MET GLU SER ILE GLY ASN SEQRES 17 A 795 ALA LYS THR THR ARG ASN ASP ASN SER SER ARG PHE GLY SEQRES 18 A 795 LYS TYR ILE GLU ILE GLY PHE ASP LYS ARG TYR ARG ILE SEQRES 19 A 795 ILE GLY ALA ASN MET ARG THR TYR LEU LEU GLU LYS SER SEQRES 20 A 795 ARG VAL VAL PHE GLN ALA GLU GLU GLU ARG ASN TYR HIS SEQRES 21 A 795 ILE PHE TYR GLN LEU CYS ALA SER ALA ALA LEU PRO GLU SEQRES 22 A 795 PHE LYS THR LEU ARG LEU GLY ASN ALA ASN TYR PHE HIS SEQRES 23 A 795 TYR THR LYS GLN GLY GLY SER PRO VAL ILE ASP GLY ILE SEQRES 24 A 795 ASP ASP ALA LYS GLU MET VAL ASN THR ARG GLN ALA CYS SEQRES 25 A 795 THR LEU LEU GLY ILE SER ASP SER TYR GLN MET GLY ILE SEQRES 26 A 795 PHE ARG ILE LEU ALA GLY ILE LEU HIS LEU GLY ASN VAL SEQRES 27 A 795 GLU PHE ALA SER ARG ASP SER ASP SER CYS ALA ILE PRO SEQRES 28 A 795 PRO LYS HIS ASP PRO LEU THR ILE PHE CYS ASP LEU MET SEQRES 29 A 795 GLY VAL ASP TYR GLU GLU MET ALA HIS TRP LEU CYS HIS SEQRES 30 A 795 ARG LYS LEU ALA THR ALA THR GLU THR TYR ILE LYS PRO SEQRES 31 A 795 ILE SER LYS LEU HIS ALA ILE ASN ALA ARG ASP ALA LEU SEQRES 32 A 795 ALA LYS HIS ILE TYR ALA ASN LEU PHE ASN TRP ILE VAL SEQRES 33 A 795 ASP HIS VAL ASN LYS ALA LEU HIS SER THR VAL LYS GLN SEQRES 34 A 795 HIS SER PHE ILE GLY VAL LEU ASP ILE TYR GLY PHE GLU SEQRES 35 A 795 THR PHE GLU ILE ASN SER PHE GLU GLN PHE CYS ILE ASN SEQRES 36 A 795 TYR ALA ASN GLU LYS LEU GLN GLN GLN PHE ASN MET HIS SEQRES 37 A 795 VAL PHE LYS LEU GLU GLN GLU GLU TYR MET LYS GLU GLN SEQRES 38 A 795 ILE PRO TRP THR LEU ILE ASP PHE TYR ASP ASN GLN PRO SEQRES 39 A 795 CYS ILE ASN LEU ILE GLU ALA LYS MET GLY VAL LEU ASP SEQRES 40 A 795 LEU LEU ASP GLU GLU CYS LYS MET PRO LYS GLY SER ASP SEQRES 41 A 795 ASP THR TRP ALA GLN LYS LEU TYR ASN THR HIS LEU ASN SEQRES 42 A 795 LYS CYS ALA LEU PHE GLU LYS PRO ARG LEU SER ASN LYS SEQRES 43 A 795 ALA PHE ILE ILE LYS HIS PHE ALA ASP LYS VAL GLU TYR SEQRES 44 A 795 GLN CYS GLU GLY PHE LEU GLU LYS ASN LYS ASP THR VAL SEQRES 45 A 795 TYR GLU GLU GLN ILE LYS VAL LEU LYS SER SER LYS LYS SEQRES 46 A 795 PHE LYS LEU LEU PRO GLU LEU PHE GLN ASP GLU GLU LYS SEQRES 47 A 795 ALA ILE SER PRO THR SER ALA THR PRO SER GLY ARG VAL SEQRES 48 A 795 PRO LEU SER ARG THR PRO VAL LYS PRO ALA LYS ALA ARG SEQRES 49 A 795 PRO GLY GLN THR SER LYS GLU HIS LYS LYS THR VAL GLY SEQRES 50 A 795 HIS GLN PHE ARG ASN SER LEU HIS LEU LEU MET GLU THR SEQRES 51 A 795 LEU ASN ALA THR THR PRO HIS TYR VAL ARG CYS ILE LYS SEQRES 52 A 795 PRO ASN ASP PHE LYS PHE PRO PHE THR PHE ASP GLU LYS SEQRES 53 A 795 ARG ALA VAL GLN GLN LEU ARG ALA CYS GLY VAL LEU GLU SEQRES 54 A 795 THR ILE ARG ILE SER ALA ALA GLY PHE PRO SER ARG TRP SEQRES 55 A 795 THR TYR GLN GLU PHE PHE SER ARG TYR ARG VAL LEU MET SEQRES 56 A 795 LYS GLN LYS ASP VAL LEU SER ASP ARG LYS GLN THR CYS SEQRES 57 A 795 LYS ASN VAL LEU GLU LYS LEU ILE LEU ASP LYS ASP LYS SEQRES 58 A 795 TYR GLN PHE GLY LYS THR LYS ILE PHE PHE ARG ALA GLY SEQRES 59 A 795 GLN VAL ALA TYR LEU GLU LYS ILE ARG ALA ASP LYS LEU SEQRES 60 A 795 ARG ALA ALA CYS ILE ARG ILE GLN LYS THR ILE ARG GLY SEQRES 61 A 795 TRP LEU MET ARG LYS LYS TYR MET ARG MET ARG ARG GLY SEQRES 62 A 795 ASP ALA SEQRES 1 B 151 MET ILE GLU PHE ASN LYS ASP GLN LEU GLU GLU PHE LYS SEQRES 2 B 151 GLU ALA PHE GLU LEU PHE ASP ARG VAL GLY ASP GLY LYS SEQRES 3 B 151 ILE LEU TYR SER GLN CYS GLY ASP VAL MET ARG ALA LEU SEQRES 4 B 151 GLY GLN ASN PRO THR ASN ALA GLU VAL LEU LYS VAL LEU SEQRES 5 B 151 GLY ASN PRO LYS SER ASP GLU LEU LYS SER ARG ARG VAL SEQRES 6 B 151 ASP PHE GLU THR PHE LEU PRO MET LEU GLN ALA VAL ALA SEQRES 7 B 151 LYS ASN ARG GLY GLN GLY THR TYR GLU ASP TYR LEU GLU SEQRES 8 B 151 GLY PHE ARG VAL PHE ASP LYS GLU GLY ASN GLY LYS VAL SEQRES 9 B 151 MET GLY ALA GLU LEU ARG HIS VAL LEU THR THR LEU GLY SEQRES 10 B 151 GLU LYS MET THR GLU GLU GLU VAL GLU THR VAL LEU ALA SEQRES 11 B 151 GLY HIS GLU ASP SER ASN GLY CYS ILE ASN TYR GLU ALA SEQRES 12 B 151 PHE LEU LYS HIS ILE LEU SER VAL HET MG A1793 1 HET ADP A1794 27 HET BEF A1795 4 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 BEF BE F3 1- FORMUL 6 HOH *525(H2 O) HELIX 1 1 ALA A 3 TYR A 7 5 5 HELIX 2 2 PRO A 65 VAL A 69 5 5 HELIX 3 3 HIS A 81 LYS A 97 1 17 HELIX 4 4 GLY A 120 SER A 128 1 9 HELIX 5 5 ASN A 131 MET A 135 5 5 HELIX 6 6 HIS A 138 GLU A 154 1 17 HELIX 7 7 GLY A 168 SER A 184 1 17 HELIX 8 8 ASN A 191 GLY A 207 1 17 HELIX 9 9 GLU A 245 VAL A 250 5 6 HELIX 10 10 TYR A 259 SER A 268 1 10 HELIX 11 11 LEU A 271 ARG A 278 5 8 HELIX 12 12 PHE A 285 GLN A 290 1 6 HELIX 13 13 ASP A 300 LEU A 315 1 16 HELIX 14 14 SER A 318 ASN A 337 1 20 HELIX 15 15 HIS A 354 GLY A 365 1 12 HELIX 16 16 ASP A 367 CYS A 376 1 10 HELIX 17 17 SER A 392 HIS A 424 1 33 HELIX 18 18 SER A 448 GLU A 480 1 33 HELIX 19 19 PRO A 483 ILE A 487 5 5 HELIX 20 20 ASN A 492 ALA A 501 1 10 HELIX 21 21 GLY A 504 LYS A 514 1 11 HELIX 22 22 SER A 519 LEU A 532 1 14 HELIX 23 23 GLY A 563 ASP A 570 1 8 HELIX 24 24 TYR A 573 SER A 582 1 10 HELIX 25 25 LYS A 587 LEU A 592 1 6 HELIX 26 26 THR A 635 ALA A 653 1 19 HELIX 27 27 ASP A 674 CYS A 685 1 12 HELIX 28 28 GLY A 686 GLY A 697 1 12 HELIX 29 29 TYR A 704 ARG A 712 1 9 HELIX 30 30 VAL A 713 MET A 715 5 3 HELIX 31 31 LYS A 716 VAL A 720 5 5 HELIX 32 32 ASP A 723 ILE A 736 1 14 HELIX 33 33 ASP A 738 ASP A 740 5 3 HELIX 34 34 GLY A 754 ARG A 792 1 39 HELIX 35 35 GLU B 11 ASP B 20 1 10 HELIX 36 36 GLN B 31 LEU B 39 1 9 HELIX 37 37 THR B 44 LEU B 52 1 9 HELIX 38 38 LYS B 56 LYS B 61 1 6 HELIX 39 39 PHE B 67 ALA B 78 1 12 HELIX 40 40 TYR B 89 VAL B 95 1 7 HELIX 41 41 GLY B 106 LEU B 116 1 11 HELIX 42 42 THR B 121 ALA B 130 1 10 HELIX 43 43 TYR B 141 ILE B 148 1 8 SHEET 1 AA 4 ARG A 12 ASP A 17 0 SHEET 2 AA 4 VAL A 21 LEU A 27 -1 O VAL A 21 N ASP A 17 SHEET 3 AA 4 VAL A 37 ARG A 41 -1 O ARG A 41 N GLU A 26 SHEET 4 AA 4 ASP A 47 CYS A 51 -1 O LEU A 48 N LEU A 40 SHEET 1 AB 7 TYR A 100 CYS A 103 0 SHEET 2 AB 7 VAL A 106 ILE A 110 -1 O VAL A 106 N CYS A 103 SHEET 3 AB 7 THR A 655 ILE A 662 1 O TYR A 658 N LEU A 107 SHEET 4 AB 7 GLN A 157 SER A 162 1 O SER A 158 N HIS A 657 SHEET 5 AB 7 SER A 431 ASP A 437 1 O PHE A 432 N GLN A 157 SHEET 6 AB 7 GLY A 221 PHE A 228 -1 O LYS A 222 N ASP A 437 SHEET 7 AB 7 ILE A 234 TYR A 242 -1 N ILE A 235 O GLY A 227 SHEET 1 AC 2 ASN A 208 ALA A 209 0 SHEET 2 AC 2 SER A 217 SER A 218 -1 O SER A 217 N ALA A 209 SHEET 1 AD 2 ALA A 341 ASP A 344 0 SHEET 2 AD 2 SER A 347 ALA A 349 -1 O SER A 347 N ARG A 343 SHEET 1 AE 2 HIS A 377 ALA A 381 0 SHEET 2 AE 2 THR A 386 PRO A 390 -1 O TYR A 387 N LEU A 380 SHEET 1 AF 3 PHE A 538 GLU A 539 0 SHEET 2 AF 3 ALA A 547 LYS A 551 -1 O ILE A 549 N GLU A 539 SHEET 3 AF 3 LYS A 556 GLN A 560 -1 O VAL A 557 N ILE A 550 SHEET 1 AG 3 SER A 700 THR A 703 0 SHEET 2 AG 3 LYS A 748 PHE A 751 -1 O ILE A 749 N TRP A 702 SHEET 3 AG 3 TYR A 742 PHE A 744 -1 O GLN A 743 N PHE A 750 SHEET 1 BA 2 LYS B 26 LEU B 28 0 SHEET 2 BA 2 ARG B 64 ASP B 66 -1 O VAL B 65 N ILE B 27 SHEET 1 BB 2 LYS B 103 MET B 105 0 SHEET 2 BB 2 CYS B 138 ASN B 140 -1 O ILE B 139 N VAL B 104 LINK OG1 THR A 170 MG MG A1793 1555 1555 2.01 LINK OG SER A 218 MG MG A1793 1555 1555 2.18 LINK MG MG A1793 O2B ADP A1794 1555 1555 1.95 LINK MG MG A1793 F2 BEF A1795 1555 1555 2.00 LINK MG MG A1793 O HOH A2277 1555 1555 2.00 LINK MG MG A1793 O HOH A2517 1555 1555 2.08 LINK O1B ADP A1794 BE BEF A1795 1555 1555 1.54 SITE 1 AC1 6 THR A 170 SER A 218 ADP A1794 BEF A1795 SITE 2 AC1 6 HOH A2277 HOH A2517 SITE 1 AC2 23 ASN A 111 PRO A 112 TYR A 113 GLU A 114 SITE 2 AC2 23 TYR A 119 GLU A 164 GLY A 166 ALA A 167 SITE 3 AC2 23 GLY A 168 LYS A 169 THR A 170 VAL A 171 SITE 4 AC2 23 ASN A 214 MG A1793 BEF A1795 HOH A2277 SITE 5 AC2 23 HOH A2512 HOH A2513 HOH A2514 HOH A2515 SITE 6 AC2 23 HOH A2516 HOH A2517 HOH A2518 SITE 1 AC3 11 SER A 165 GLY A 166 LYS A 169 ASN A 214 SITE 2 AC3 11 SER A 217 SER A 218 MG A1793 ADP A1794 SITE 3 AC3 11 HOH A2111 HOH A2277 HOH A2517 CRYST1 169.684 95.988 84.306 90.00 96.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005893 0.000000 0.000631 0.00000 SCALE2 0.000000 0.010418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011929 0.00000