PDB Short entry for 1WAR HEADER HYDROLASE 28-OCT-04 1WAR TITLE RECOMBINANT HUMAN PURPLE ACID PHOSPHATASE EXPRESSED IN PICHIA PASTORIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PURPLE ACID PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACP5 PROTEIN, TARTRATE-RESISTANT ACID ATPASE, TRATPASE, TR- COMPND 5 AP; COMPND 6 EC: 3.1.3.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: A SIX AMINO ACID CLONING ARTIFACT IS ATTACHED TO THE COMPND 9 N-TERMINUS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPICZALPHAA KEYWDS GLYCOPROTEIN, HYDROLASE, IRON, IRON TRANSPORT, METALLOENZYME, PURPLE KEYWDS 2 ACID PHOSPHATASE, TARTRATE RESISTANT ACID PHOSPHATASE, UTEROFERRIN EXPDTA X-RAY DIFFRACTION AUTHOR A.P.DUFF,D.B.LANGLEY,R.HAN,B.A.AVERILL,H.C.FREEMAN,J.M.GUSS REVDAT 7 13-DEC-23 1WAR 1 HETSYN REVDAT 6 29-JUL-20 1WAR 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 03-APR-19 1WAR 1 REMARK LINK REVDAT 4 13-JUL-11 1WAR 1 VERSN REVDAT 3 24-FEB-09 1WAR 1 VERSN REVDAT 2 20-JUL-05 1WAR 1 JRNL REVDAT 1 06-JUL-05 1WAR 0 JRNL AUTH N.STRATER,B.JASPER,M.SCHOLTE,B.KREBS,A.P.DUFF,D.B.LANGLEY, JRNL AUTH 2 R.HAN,B.A.AVERILL,H.C.FREEMAN,J.M.GUSS JRNL TITL CRYSTAL STRUCTURES OF RECOMBINANT HUMAN PURPLE ACID JRNL TITL 2 PHOSPHATASE WITH AND WITHOUT AN INHIBITORY CONFORMATION OF JRNL TITL 3 THE REPRESSION LOOP. JRNL REF J.MOL.BIOL. V. 351 233 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15993892 JRNL DOI 10.1016/J.JMB.2005.04.014 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 15167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1051 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2570 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2274 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3489 ; 1.373 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5267 ; 0.862 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 6.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2874 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 440 ; 0.182 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2413 ; 0.236 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1522 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 88 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.059 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1543 ; 2.645 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2482 ; 4.614 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 6.455 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1007 ;10.013 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -6 A -1 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8890 -15.1500 53.8630 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0619 REMARK 3 T33: 0.0627 T12: 0.0000 REMARK 3 T13: -0.0005 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 20.2512 L22: 3.8686 REMARK 3 L33: 26.5322 L12: 7.3242 REMARK 3 L13: 18.6134 L23: -0.9271 REMARK 3 S TENSOR REMARK 3 S11: 0.1232 S12: 0.3995 S13: 0.0051 REMARK 3 S21: -0.9740 S22: -0.1938 S23: -0.0765 REMARK 3 S31: -0.0278 S32: 0.6788 S33: 0.0707 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5160 21.0960 46.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.0840 T22: 0.0504 REMARK 3 T33: 0.0280 T12: 0.0089 REMARK 3 T13: 0.0109 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.1878 L22: 1.6019 REMARK 3 L33: 0.8215 L12: 0.3340 REMARK 3 L13: 0.0198 L23: -0.2285 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: -0.0934 S13: 0.0094 REMARK 3 S21: 0.0423 S22: -0.0308 S23: -0.0114 REMARK 3 S31: -0.0054 S32: -0.0306 S33: 0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1WAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 300.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 18.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UTE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN (10 MG/ML) IN 50 MM MES AT REMARK 280 PH 6, WAS PASSED THROUGH AN ULTRAFREE-MC 0.22 MM SPIN FILTER REMARK 280 UNIT (MILLIPORE) AND ALLOWED TO STAND AT 4 DEGREES C. PURPLE REMARK 280 CRYSTALS GREW SPONTANEOUSLY OVERNIGHT AND REACHED SIZES UP TO REMARK 280 0.5 MM IN SEVERAL WEEKS., TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.99900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.26900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.26900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.99850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.26900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.26900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.99950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.26900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.26900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.99850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.26900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.26900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.99950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.99900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 177 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 220 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 244 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 69 -68.88 -109.63 REMARK 500 PHE A 111 73.29 -152.26 REMARK 500 SER A 189 142.38 -170.89 REMARK 500 ALA A 191 -146.30 -98.82 REMARK 500 HIS A 219 -48.29 73.88 REMARK 500 ASN A 241 -34.75 -148.30 REMARK 500 THR A 264 130.12 -36.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 ASP A 50 OD2 90.7 REMARK 620 3 TYR A 53 OH 99.2 97.2 REMARK 620 4 HIS A 221 NE2 93.4 171.8 89.2 REMARK 620 5 PO4 A 411 O4 167.2 84.8 93.3 89.7 REMARK 620 6 HOH A2008 O 82.5 71.1 168.3 102.3 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD2 REMARK 620 2 ASN A 89 OD1 105.6 REMARK 620 3 HIS A 184 NE2 86.9 82.3 REMARK 620 4 HIS A 219 ND1 164.5 88.3 88.0 REMARK 620 5 PO4 A 411 O3 91.0 89.9 171.2 96.1 REMARK 620 6 HOH A2008 O 79.6 169.2 107.6 88.0 80.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PURPLE ACID PHOSPHATASE WITH AN REMARK 900 INHIBITORY CONFORMATION OF THE REPRESSION LOOP REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST 20 RESIDUES OF Q6IAS6 ARE NOT PART OF THE MATURE REMARK 999 ENZYME. THE MATURE PROTEIN COMPRISES RESIDUES 21-325 AS REMARK 999 NUMBERED IN Q6IAS6. A SIX AMINO ACID CLONING ARTIFACT IS REMARK 999 ATTACHED TO THE N-TERMINUS OF THE MATURE PROTEIN. DBREF 1WAR A -6 -1 PDB 1WAR 1WAR -6 -1 DBREF 1WAR A 1 304 UNP Q6IAS6 Q6IAS6 22 325 SEQADV 1WAR VAL A 127 UNP Q6IAS6 MET 148 CONFLICT SEQADV 1WAR VAL A 179 UNP Q6IAS6 MET 200 CONFLICT SEQRES 1 A 310 GLU ALA GLU ALA GLU PHE ALA THR PRO ALA LEU ARG PHE SEQRES 2 A 310 VAL ALA VAL GLY ASP TRP GLY GLY VAL PRO ASN ALA PRO SEQRES 3 A 310 PHE HIS THR ALA ARG GLU MET ALA ASN ALA LYS GLU ILE SEQRES 4 A 310 ALA ARG THR VAL GLN ILE LEU GLY ALA ASP PHE ILE LEU SEQRES 5 A 310 SER LEU GLY ASP ASN PHE TYR PHE THR GLY VAL GLN ASP SEQRES 6 A 310 ILE ASN ASP LYS ARG PHE GLN GLU THR PHE GLU ASP VAL SEQRES 7 A 310 PHE SER ASP ARG SER LEU ARG LYS VAL PRO TRP TYR VAL SEQRES 8 A 310 LEU ALA GLY ASN HIS ASP HIS LEU GLY ASN VAL SER ALA SEQRES 9 A 310 GLN ILE ALA TYR SER LYS ILE SER LYS ARG TRP ASN PHE SEQRES 10 A 310 PRO SER PRO PHE TYR ARG LEU HIS PHE LYS ILE PRO GLN SEQRES 11 A 310 THR ASN VAL SER VAL ALA ILE PHE MET LEU ASP THR VAL SEQRES 12 A 310 THR LEU CYS GLY ASN SER ASP ASP PHE LEU SER GLN GLN SEQRES 13 A 310 PRO GLU ARG PRO ARG ASP VAL LYS LEU ALA ARG THR GLN SEQRES 14 A 310 LEU SER TRP LEU LYS LYS GLN LEU ALA ALA ALA ARG GLU SEQRES 15 A 310 ASP TYR VAL LEU VAL ALA GLY HIS TYR PRO VAL TRP SER SEQRES 16 A 310 ILE ALA GLU HIS GLY PRO THR HIS CYS LEU VAL LYS GLN SEQRES 17 A 310 LEU ARG PRO LEU LEU ALA THR TYR GLY VAL THR ALA TYR SEQRES 18 A 310 LEU CYS GLY HIS ASP HIS ASN LEU GLN TYR LEU GLN ASP SEQRES 19 A 310 GLU ASN GLY VAL GLY TYR VAL LEU SER GLY ALA GLY ASN SEQRES 20 A 310 PHE MET ASP PRO SER LYS ARG HIS GLN ARG LYS VAL PRO SEQRES 21 A 310 ASN GLY TYR LEU ARG PHE HIS TYR GLY THR GLU ASP SER SEQRES 22 A 310 LEU GLY GLY PHE ALA TYR VAL GLU ILE SER SER LYS GLU SEQRES 23 A 310 MET THR VAL THR TYR ILE GLU ALA SER GLY LYS SER LEU SEQRES 24 A 310 PHE LYS THR ARG LEU PRO ARG ARG ALA ARG PRO MODRES 1WAR ASN A 95 ASN GLYCOSYLATION SITE HET FE A 401 1 HET FE A 402 1 HET PO4 A 411 5 HET NAG A1095 25 HETNAM FE FE (III) ION HETNAM PO4 PHOSPHATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 FE 2(FE 3+) FORMUL 4 PO4 O4 P 3- FORMUL 5 NAG C8 H15 N O6 FORMUL 6 HOH *61(H2 O) HELIX 1 1 THR A 23 LEU A 40 1 18 HELIX 2 2 LYS A 63 PHE A 69 1 7 HELIX 3 3 HIS A 90 GLY A 94 5 5 HELIX 4 4 ASN A 95 TYR A 102 1 8 HELIX 5 5 SER A 103 ILE A 105 5 3 HELIX 6 6 ASP A 135 GLY A 141 1 7 HELIX 7 7 ASN A 142 PHE A 146 5 5 HELIX 8 8 ASP A 156 ALA A 174 1 19 HELIX 9 9 THR A 196 LEU A 203 1 8 HELIX 10 10 LEU A 203 TYR A 210 1 8 HELIX 11 11 HIS A 249 VAL A 253 5 5 SHEET 1 AA 7 TRP A 109 ASN A 110 0 SHEET 2 AA 7 TRP A 83 VAL A 85 1 O TRP A 83 N ASN A 110 SHEET 3 AA 7 PHE A 44 SER A 47 1 O ILE A 45 N TYR A 84 SHEET 4 AA 7 LEU A 5 VAL A 10 1 O VAL A 8 N LEU A 46 SHEET 5 AA 7 GLY A 270 ILE A 276 -1 O ALA A 272 N ALA A 9 SHEET 6 AA 7 GLU A 280 GLU A 287 -1 O THR A 282 N GLU A 275 SHEET 7 AA 7 SER A 292 PRO A 299 -1 N LEU A 293 O TYR A 285 SHEET 1 AB 7 TYR A 116 LYS A 121 0 SHEET 2 AB 7 SER A 128 MET A 133 -1 O VAL A 129 N PHE A 120 SHEET 3 AB 7 TYR A 178 ALA A 182 1 O TYR A 178 N ALA A 130 SHEET 4 AB 7 ALA A 214 CYS A 217 1 O ALA A 214 N VAL A 181 SHEET 5 AB 7 GLY A 233 SER A 237 1 O GLY A 233 N TYR A 215 SHEET 6 AB 7 LEU A 223 GLN A 227 -1 O GLN A 224 N LEU A 236 SHEET 7 AB 7 LEU A 258 TYR A 262 -1 N ARG A 259 O TYR A 225 SSBOND 1 CYS A 140 CYS A 198 1555 1555 2.04 LINK ND2 ASN A 95 C1 NAG A1095 1555 1555 1.45 LINK OD1 ASP A 12 FE FE A 401 1555 1555 2.05 LINK OD2 ASP A 50 FE FE A 401 1555 1555 2.24 LINK OD2 ASP A 50 FE FE A 402 1555 1555 2.17 LINK OH TYR A 53 FE FE A 401 1555 1555 1.95 LINK OD1 ASN A 89 FE FE A 402 1555 1555 2.06 LINK NE2 HIS A 184 FE FE A 402 1555 1555 2.18 LINK ND1 HIS A 219 FE FE A 402 1555 1555 2.22 LINK NE2 HIS A 221 FE FE A 401 1555 1555 2.22 LINK FE FE A 401 O4 PO4 A 411 1555 1555 2.12 LINK FE FE A 401 O HOH A2008 1555 1555 2.08 LINK FE FE A 402 O3 PO4 A 411 1555 1555 2.15 LINK FE FE A 402 O HOH A2008 1555 1555 1.74 CISPEP 1 ALA A 19 PRO A 20 0 4.65 CISPEP 2 TYR A 53 PHE A 54 0 6.87 CRYST1 80.538 80.538 99.998 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010000 0.00000