PDB Short entry for 1WFZ HEADER METAL TRANSPORT 27-MAY-04 1WFZ TITLE SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER PROTEIN U (ISCU) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN FIXATION CLUSTER-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISCU; COMPND 5 SYNONYM: IRON-SULFUR CLUSTER PROTEIN U; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 2300003J05; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P020826-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS IRON-SULFUR CLUSTER BIOSYNTHESIS, THREE CONSERVED CYS, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 3 METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAKANISHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WFZ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1WFZ 1 VERSN REVDAT 1 27-NOV-04 1WFZ 0 JRNL AUTH T.NAKANISHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF IRON-SULFUR CLUSTER PROTEIN U (ISCU) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WFZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023538. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM ISCU DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 10MM D-DTT; 0.02% NAN3; 0.01MM REMARK 210 ZNCL2; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20030801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.870, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 95.92 -69.15 REMARK 500 1 GLU A 8 38.16 37.63 REMARK 500 1 ASN A 9 140.25 -34.44 REMARK 500 1 PRO A 10 -164.45 -69.70 REMARK 500 1 ASP A 17 101.25 -54.25 REMARK 500 1 SER A 61 -33.84 -34.95 REMARK 500 1 HIS A 101 -37.24 -38.91 REMARK 500 1 ALA A 113 -71.24 -60.34 REMARK 500 2 SER A 2 41.77 -95.07 REMARK 500 2 GLU A 8 101.35 -42.84 REMARK 500 2 PRO A 10 -179.76 -69.70 REMARK 500 2 ASN A 12 78.11 -62.55 REMARK 500 2 CYS A 59 177.18 -59.90 REMARK 500 2 SER A 61 -34.10 -34.82 REMARK 500 2 HIS A 101 -37.39 -37.77 REMARK 500 2 ALA A 113 -70.44 -53.19 REMARK 500 2 ALA A 115 -70.32 -45.80 REMARK 500 2 SER A 123 -175.05 -174.26 REMARK 500 2 PRO A 127 -173.10 -69.75 REMARK 500 3 VAL A 13 112.36 -38.74 REMARK 500 3 SER A 15 118.64 -169.67 REMARK 500 3 SER A 61 -30.16 -36.98 REMARK 500 3 SER A 65 -37.00 -39.79 REMARK 500 3 SER A 129 81.32 -65.89 REMARK 500 4 ARG A 11 -68.39 -95.16 REMARK 500 4 SER A 61 -33.81 -35.19 REMARK 500 4 ALA A 90 -37.78 -36.04 REMARK 500 4 HIS A 101 -31.87 -38.11 REMARK 500 4 LYS A 124 -43.75 -132.60 REMARK 500 5 PRO A 10 -168.70 -69.74 REMARK 500 5 SER A 15 118.12 -32.20 REMARK 500 5 ASP A 17 101.21 -55.11 REMARK 500 5 SER A 61 -37.75 -35.05 REMARK 500 5 ALA A 90 -37.38 -38.15 REMARK 500 5 SER A 125 100.91 -39.48 REMARK 500 6 SER A 5 127.47 -170.43 REMARK 500 6 SER A 15 140.55 -172.06 REMARK 500 6 SER A 61 -34.07 -35.22 REMARK 500 6 SER A 65 -32.43 -38.59 REMARK 500 6 SER A 67 -29.17 -39.60 REMARK 500 6 HIS A 101 -36.72 -37.84 REMARK 500 6 ALA A 113 -72.01 -58.37 REMARK 500 6 LYS A 124 45.30 -85.18 REMARK 500 6 PRO A 127 86.46 -69.76 REMARK 500 7 PRO A 10 -175.04 -69.71 REMARK 500 7 ASN A 12 89.78 -66.16 REMARK 500 7 SER A 61 -32.49 -34.90 REMARK 500 7 ALA A 64 -70.15 -65.70 REMARK 500 7 HIS A 101 -27.24 -38.44 REMARK 500 7 ALA A 113 -74.53 -58.68 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 ASP A 35 OD2 102.8 REMARK 620 3 CYS A 59 SG 117.3 110.0 REMARK 620 4 HIS A 101 NE2 101.9 113.0 111.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001001342.1 RELATED DB: TARGETDB DBREF 1WFZ A 8 124 UNP Q9D7P6 NIFUN_MOUSE 45 161 SEQADV 1WFZ GLY A 1 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 2 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 3 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 4 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 5 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 6 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 7 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 125 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 126 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ PRO A 127 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 128 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ SER A 129 UNP Q9D7P6 CLONING ARTIFACT SEQADV 1WFZ GLY A 130 UNP Q9D7P6 CLONING ARTIFACT SEQRES 1 A 130 GLY SER SER GLY SER SER GLY GLU ASN PRO ARG ASN VAL SEQRES 2 A 130 GLY SER LEU ASP LYS THR SER LYS ASN VAL GLY THR GLY SEQRES 3 A 130 LEU VAL GLY ALA PRO ALA CYS GLY ASP VAL MET LYS LEU SEQRES 4 A 130 GLN ILE GLN VAL ASP GLU LYS GLY LYS ILE VAL ASP ALA SEQRES 5 A 130 ARG PHE LYS THR PHE GLY CYS GLY SER ALA ILE ALA SER SEQRES 6 A 130 SER SER LEU ALA THR GLU TRP VAL LYS GLY LYS THR VAL SEQRES 7 A 130 GLU GLU ALA LEU THR ILE LYS ASN THR ASP ILE ALA LYS SEQRES 8 A 130 GLU LEU CYS LEU PRO PRO VAL LYS LEU HIS CYS SER MET SEQRES 9 A 130 LEU ALA GLU ASP ALA ILE LYS ALA ALA LEU ALA ASP TYR SEQRES 10 A 130 LYS LEU LYS GLN GLU SER LYS SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLY A 60 VAL A 73 1 14 HELIX 2 2 VAL A 78 ALA A 81 1 4 HELIX 3 3 ASN A 86 GLU A 92 1 7 HELIX 4 4 CYS A 102 GLN A 121 5 20 SHEET 1 A 3 VAL A 23 ALA A 30 0 SHEET 2 A 3 ASP A 35 VAL A 43 -1 O LEU A 39 N GLY A 26 SHEET 3 A 3 ILE A 49 PHE A 57 -1 O LYS A 55 N LYS A 38 LINK SG CYS A 33 ZN ZN A 201 1555 1555 2.33 LINK OD2 ASP A 35 ZN ZN A 201 1555 1555 2.07 LINK SG CYS A 59 ZN ZN A 201 1555 1555 2.28 LINK NE2 HIS A 101 ZN ZN A 201 1555 1555 2.09 SITE 1 AC1 5 CYS A 33 ASP A 35 CYS A 59 HIS A 101 SITE 2 AC1 5 CYS A 102 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000