PDB Short entry for 1WHK HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WHK TITLE SOLUTION STRUCTURE OF THE 3RD CAP-GLY DOMAIN IN MOUSE 1700024K14RIK TITLE 2 HYPOTHETICAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIKEN CDNA 1700024K14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAP-GLY DOMAIN; COMPND 5 SYNONYM: 1700024K14RIK; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 5830409B12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040223-88; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WHK 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WHK 1 VERSN REVDAT 1 28-NOV-04 1WHK 0 JRNL AUTH K.SAITO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 3RD CAP-GLY DOMAIN IN MOUSE JRNL TITL 2 1700024K14RIK HYPOTHETICAL PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER, A.T. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WHK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023587. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20MM D-TRIS-HCL, PH REMARK 210 7.0, 100MM NACL, 1MM D-DTT, 0.02% REMARK 210 NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 112.10 -160.03 REMARK 500 1 SER A 5 -62.05 -126.55 REMARK 500 1 GLU A 8 176.50 56.11 REMARK 500 1 THR A 10 35.08 -99.00 REMARK 500 1 LYS A 12 74.57 -119.05 REMARK 500 1 HIS A 14 -54.13 -126.21 REMARK 500 1 THR A 22 33.29 -98.76 REMARK 500 1 SER A 23 -47.53 -147.49 REMARK 500 1 ARG A 49 35.58 -98.36 REMARK 500 1 LYS A 52 35.96 -143.65 REMARK 500 1 LYS A 54 30.75 -142.02 REMARK 500 1 TYR A 82 142.45 -171.18 REMARK 500 1 SER A 86 -66.00 -105.75 REMARK 500 2 SER A 3 -47.03 -148.91 REMARK 500 2 SER A 6 132.85 -173.32 REMARK 500 2 LEU A 13 -178.60 60.02 REMARK 500 2 GLU A 15 99.41 -63.73 REMARK 500 2 SER A 23 48.53 -104.63 REMARK 500 2 SER A 24 -36.72 -179.29 REMARK 500 2 PRO A 35 -178.97 -52.10 REMARK 500 2 LYS A 52 33.92 -151.01 REMARK 500 2 TYR A 64 -46.71 -132.20 REMARK 500 2 ASN A 70 60.56 61.61 REMARK 500 2 TYR A 71 -57.48 -130.74 REMARK 500 2 SER A 86 31.10 -155.35 REMARK 500 3 SER A 3 92.36 -68.95 REMARK 500 3 SER A 5 36.68 -99.23 REMARK 500 3 SER A 6 -171.45 -63.07 REMARK 500 3 VAL A 11 84.25 58.83 REMARK 500 3 HIS A 14 -57.68 -121.43 REMARK 500 3 ARG A 49 31.08 -99.02 REMARK 500 3 ALA A 51 86.47 -67.67 REMARK 500 3 LYS A 52 30.31 -156.25 REMARK 500 3 LYS A 54 31.90 -144.90 REMARK 500 3 TYR A 64 -58.20 -135.97 REMARK 500 3 ASN A 70 63.25 61.04 REMARK 500 3 ILE A 85 -67.59 68.69 REMARK 500 3 SER A 86 152.25 61.93 REMARK 500 3 SER A 90 81.00 60.42 REMARK 500 4 THR A 10 132.29 64.00 REMARK 500 4 VAL A 11 -67.01 -144.66 REMARK 500 4 LYS A 12 175.56 59.81 REMARK 500 4 SER A 23 -47.43 -140.07 REMARK 500 4 SER A 40 74.18 60.79 REMARK 500 4 LYS A 52 30.97 -164.19 REMARK 500 4 TYR A 64 -52.75 -129.18 REMARK 500 4 ASN A 70 64.34 61.45 REMARK 500 4 SER A 86 161.08 61.14 REMARK 500 5 SER A 3 35.68 -98.22 REMARK 500 5 SER A 5 58.78 -154.19 REMARK 500 REMARK 500 THIS ENTRY HAS 221 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007112333.2 RELATED DB: TARGETDB DBREF 1WHK A 8 85 UNP Q8CI96 RSNL2_MOUSE 617 694 SEQADV 1WHK GLY A 1 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 2 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 3 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK GLY A 4 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 5 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 6 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK GLY A 7 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 86 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK GLY A 87 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK PRO A 88 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 89 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK SER A 90 UNP Q8CI96 CLONING ARTIFACT SEQADV 1WHK GLY A 91 UNP Q8CI96 CLONING ARTIFACT SEQRES 1 A 91 GLY SER SER GLY SER SER GLY GLU GLY THR VAL LYS LEU SEQRES 2 A 91 HIS GLU GLY SER GLN VAL LEU LEU THR SER SER ASN GLU SEQRES 3 A 91 MET ALA THR VAL ARG TYR VAL GLY PRO THR ASP PHE ALA SEQRES 4 A 91 SER GLY ILE TRP LEU GLY LEU GLU LEU ARG SER ALA LYS SEQRES 5 A 91 GLY LYS ASN ASP GLY ALA VAL GLY ASP LYS ARG TYR PHE SEQRES 6 A 91 THR CYS LYS PRO ASN TYR GLY VAL LEU VAL ARG PRO SER SEQRES 7 A 91 ARG VAL THR TYR ARG GLY ILE SER GLY PRO SER SER GLY HELIX 1 1 ARG A 76 SER A 78 5 3 SHEET 1 A 3 GLY A 34 PRO A 35 0 SHEET 2 A 3 ILE A 42 GLU A 47 -1 O TRP A 43 N GLY A 34 SHEET 3 A 3 LEU A 74 VAL A 75 -1 O VAL A 75 N LEU A 44 SHEET 1 B 5 GLY A 34 PRO A 35 0 SHEET 2 B 5 ILE A 42 GLU A 47 -1 O TRP A 43 N GLY A 34 SHEET 3 B 5 MET A 27 VAL A 30 -1 N THR A 29 O GLU A 47 SHEET 4 B 5 GLN A 18 LEU A 21 -1 N VAL A 19 O ALA A 28 SHEET 5 B 5 VAL A 80 THR A 81 -1 O THR A 81 N LEU A 20 SHEET 1 C 2 ALA A 58 VAL A 59 0 SHEET 2 C 2 LYS A 62 ARG A 63 -1 O LYS A 62 N VAL A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000