PDB Short entry for 1WI5 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-MAY-04 1WI5 TITLE SOLUTION STRUCTURE OF THE S1 RNA BINDING DOMAIN FROM HUMAN TITLE 2 HYPOTHETICAL PROTEIN BAA11502 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRP5 PROTEIN HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S1 DOMAIN; COMPND 5 SYNONYM: PROGRAMMED CELL DEATH PROTEIN 11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIKEN CDNA HA02717; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030512-28; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS S1 DOMAIN, OB-FOLD, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WI5 1 REMARK SEQADV SHEET REVDAT 2 24-FEB-09 1WI5 1 VERSN REVDAT 1 28-NOV-04 1WI5 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE S1 RNA BINDING DOMAIN FROM HUMAN JRNL TITL 2 HYPOTHETICAL PROTEIN BAA11502 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WI5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023604. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM 13C/15N-PROTEIN 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, OLIVIA 1.9.12, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 192 46.22 33.69 REMARK 500 1 LEU A 197 154.58 -47.99 REMARK 500 1 LYS A 240 -72.19 -99.14 REMARK 500 1 ASN A 241 35.85 -83.69 REMARK 500 1 LYS A 242 33.64 34.44 REMARK 500 1 ASN A 262 41.05 -88.13 REMARK 500 1 SER A 295 142.03 -173.43 REMARK 500 2 VAL A 191 47.96 -76.45 REMARK 500 2 LEU A 197 155.36 -40.05 REMARK 500 2 LYS A 240 -69.86 -101.31 REMARK 500 2 ASN A 241 32.80 -84.37 REMARK 500 2 LYS A 242 28.62 37.32 REMARK 500 2 LYS A 245 155.14 -46.77 REMARK 500 2 GLN A 283 97.28 -49.17 REMARK 500 2 GLN A 284 131.97 -173.61 REMARK 500 2 LEU A 288 -50.72 -134.78 REMARK 500 2 SER A 296 160.51 -44.57 REMARK 500 3 SER A 181 151.75 -49.60 REMARK 500 3 VAL A 191 53.57 34.04 REMARK 500 3 LEU A 197 160.53 -42.41 REMARK 500 3 ASN A 241 35.33 -83.58 REMARK 500 3 LYS A 242 33.09 34.21 REMARK 500 3 ASN A 262 40.06 -95.60 REMARK 500 3 SER A 292 108.48 -163.15 REMARK 500 4 SER A 181 154.24 -47.00 REMARK 500 4 ASN A 189 90.12 -55.12 REMARK 500 4 LEU A 192 45.36 34.59 REMARK 500 4 LYS A 240 -67.34 -100.17 REMARK 500 4 ASN A 241 32.81 -84.30 REMARK 500 4 LYS A 242 27.88 37.94 REMARK 500 4 SER A 273 119.82 -171.38 REMARK 500 4 ALA A 280 95.62 -58.05 REMARK 500 4 GLU A 282 178.32 -57.12 REMARK 500 4 SER A 285 171.10 -51.07 REMARK 500 4 TRP A 286 -179.75 -51.84 REMARK 500 5 SER A 180 78.34 -63.01 REMARK 500 5 SER A 183 172.87 -57.27 REMARK 500 5 LYS A 240 -68.96 -99.31 REMARK 500 5 ASN A 241 34.03 -84.06 REMARK 500 5 LYS A 242 34.20 34.73 REMARK 500 5 LYS A 245 135.76 -35.61 REMARK 500 5 LEU A 246 -175.71 -69.22 REMARK 500 5 ASN A 262 30.64 -85.85 REMARK 500 5 HIS A 272 37.05 -87.38 REMARK 500 5 VAL A 275 32.12 34.97 REMARK 500 5 GLN A 283 158.89 -47.06 REMARK 500 5 TRP A 286 68.26 -118.02 REMARK 500 5 PRO A 294 84.13 -69.75 REMARK 500 6 SER A 180 50.43 -90.33 REMARK 500 6 ASN A 189 100.53 -42.05 REMARK 500 REMARK 500 THIS ENTRY HAS 188 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMIANTION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000182.1 RELATED DB: TARGETDB DBREF 1WI5 A 186 291 UNP Q14690 RRP5_HUMAN 173 278 SEQADV 1WI5 GLY A 179 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 180 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 181 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 GLY A 182 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 183 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 184 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 GLY A 185 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 292 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 GLY A 293 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 PRO A 294 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 295 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 SER A 296 UNP Q14690 CLONING ARTIFACT SEQADV 1WI5 GLY A 297 UNP Q14690 CLONING ARTIFACT SEQRES 1 A 119 GLY SER SER GLY SER SER GLY LYS ASN VAL ASN ARG VAL SEQRES 2 A 119 LEU SER ALA GLU ALA LEU LYS PRO GLY MET LEU LEU THR SEQRES 3 A 119 GLY THR VAL SER SER LEU GLU ASP HIS GLY TYR LEU VAL SEQRES 4 A 119 ASP ILE GLY VAL ASP GLY THR ARG ALA PHE LEU PRO LEU SEQRES 5 A 119 LEU LYS ALA GLN GLU TYR ILE ARG GLN LYS ASN LYS GLY SEQRES 6 A 119 ALA LYS LEU LYS VAL GLY GLN TYR LEU ASN CYS ILE VAL SEQRES 7 A 119 GLU LYS VAL LYS GLY ASN GLY GLY VAL VAL SER LEU SER SEQRES 8 A 119 VAL GLY HIS SER GLU VAL SER THR ALA ILE ALA THR GLU SEQRES 9 A 119 GLN GLN SER TRP ASN LEU ASN ASN LEU SER GLY PRO SER SEQRES 10 A 119 SER GLY HELIX 1 1 LEU A 230 GLN A 239 1 10 SHEET 1 A 5 LEU A 202 GLU A 211 0 SHEET 2 A 5 GLY A 214 ASP A 218 -1 O ASP A 218 N THR A 206 SHEET 3 A 5 ARG A 225 PRO A 229 -1 O LEU A 228 N TYR A 215 SHEET 4 A 5 GLN A 250 LYS A 260 -1 N GLU A 257 O SER A 267 SHEET 5 A 5 VAL A 265 SER A 269 1 O VAL A 266 N ARG A 225 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000