PDB Short entry for 1WJL HEADER PROTEIN BINDING 29-MAY-04 1WJL TITLE SOLUTION STRUCTURE OF PDZ DOMAIN OF MOUSE CYPHER PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYPHER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1110032B18; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P031104-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, SIGNAL TRANSDUCTION, A STRIATED MUSCLE-SPECIFIC PDZLIM KEYWDS 2 DOMAIN, LIM DOMAIN BINDING 3, ZASP, Z-BAND ALTERNATIVELY SPLICED KEYWDS 3 PDZ-MOTIF PROTEIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WJL 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WJL 1 VERSN REVDAT 1 29-NOV-04 1WJL 0 JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PDZ DOMAIN OF MOUSE CYPHER PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WJL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023645. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM PDZ DOMAIN U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8996, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 27 H MET A 32 1.53 REMARK 500 O ALA A 58 H THR A 86 1.55 REMARK 500 H ILE A 59 O VAL A 62 1.56 REMARK 500 H SER A 51 OD2 ASP A 54 1.57 REMARK 500 H VAL A 57 O THR A 86 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 123.03 178.74 REMARK 500 1 MET A 8 104.93 -179.55 REMARK 500 1 SER A 37 -71.91 -49.22 REMARK 500 1 SER A 48 -120.75 -125.03 REMARK 500 1 ASP A 54 156.18 -39.92 REMARK 500 1 ASN A 63 158.51 -46.19 REMARK 500 1 ALA A 79 153.38 -43.74 REMARK 500 1 SER A 80 -89.74 -140.40 REMARK 500 2 SER A 2 104.01 59.65 REMARK 500 2 MET A 8 109.66 -174.24 REMARK 500 2 ILE A 36 96.93 -65.83 REMARK 500 2 SER A 37 -71.04 -48.14 REMARK 500 2 SER A 43 173.26 -48.51 REMARK 500 2 SER A 48 -134.37 -120.67 REMARK 500 2 ASP A 54 157.14 -39.20 REMARK 500 2 ASN A 63 157.00 -42.35 REMARK 500 2 SER A 80 -55.79 -130.99 REMARK 500 3 MET A 8 111.90 -171.17 REMARK 500 3 ILE A 36 89.50 -68.01 REMARK 500 3 SER A 48 -87.39 -116.60 REMARK 500 3 GLN A 49 -37.88 -166.29 REMARK 500 3 ASP A 54 157.02 -39.65 REMARK 500 3 ASN A 63 160.93 -41.50 REMARK 500 3 ALA A 79 154.04 -42.92 REMARK 500 3 SER A 80 -91.22 -135.32 REMARK 500 4 SER A 5 -64.29 -176.24 REMARK 500 4 SER A 6 -166.47 -116.86 REMARK 500 4 MET A 8 117.38 -170.15 REMARK 500 4 LEU A 34 103.27 -59.39 REMARK 500 4 SER A 37 -76.86 -54.58 REMARK 500 4 SER A 48 -106.01 -135.53 REMARK 500 4 GLN A 49 13.94 -142.15 REMARK 500 4 ASP A 54 155.72 -39.77 REMARK 500 4 ASN A 63 156.81 -42.83 REMARK 500 4 THR A 68 -166.09 -77.14 REMARK 500 4 ALA A 79 161.66 -47.88 REMARK 500 4 SER A 80 -80.17 -138.83 REMARK 500 5 SER A 2 113.48 59.96 REMARK 500 5 MET A 8 102.46 -175.50 REMARK 500 5 ILE A 36 98.42 -64.08 REMARK 500 5 SER A 37 -74.87 -51.42 REMARK 500 5 SER A 48 -124.17 -119.20 REMARK 500 5 ASP A 54 156.62 -39.18 REMARK 500 5 ASN A 63 159.94 -41.23 REMARK 500 5 SER A 80 -74.27 -135.93 REMARK 500 6 SER A 2 -58.87 -158.27 REMARK 500 6 SER A 5 77.19 61.91 REMARK 500 6 MET A 8 104.15 -165.19 REMARK 500 6 LEU A 34 102.56 -59.37 REMARK 500 6 SER A 48 -84.28 -126.40 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007001185.1 RELATED DB: TARGETDB DBREF 1WJL A 8 90 UNP Q9D130 Q9D130_MOUSE 1 83 SEQADV 1WJL GLY A 1 UNP Q9D130 CLONING ARTIFACT SEQADV 1WJL SER A 2 UNP Q9D130 CLONING ARTIFACT SEQADV 1WJL SER A 3 UNP Q9D130 CLONING ARTIFACT SEQADV 1WJL GLY A 4 UNP Q9D130 CLONING ARTIFACT SEQADV 1WJL SER A 5 UNP Q9D130 CLONING ARTIFACT SEQADV 1WJL SER A 6 UNP Q9D130 CLONING ARTIFACT SEQADV 1WJL GLY A 7 UNP Q9D130 CLONING ARTIFACT SEQRES 1 A 90 GLY SER SER GLY SER SER GLY MET SER TYR SER VAL THR SEQRES 2 A 90 LEU THR GLY PRO GLY PRO TRP GLY PHE ARG LEU GLN GLY SEQRES 3 A 90 GLY LYS ASP PHE ASN MET PRO LEU THR ILE SER ARG ILE SEQRES 4 A 90 THR PRO GLY SER LYS ALA ALA GLN SER GLN LEU SER GLN SEQRES 5 A 90 GLY ASP LEU VAL VAL ALA ILE ASP GLY VAL ASN THR ASP SEQRES 6 A 90 THR MET THR HIS LEU GLU ALA GLN ASN LYS ILE LYS SER SEQRES 7 A 90 ALA SER TYR ASN LEU SER LEU THR LEU GLN LYS SER HELIX 1 1 SER A 43 SER A 48 5 6 HELIX 2 2 THR A 68 ALA A 79 1 12 SHEET 1 A 3 SER A 9 THR A 15 0 SHEET 2 A 3 ASN A 82 GLN A 88 -1 O LEU A 83 N LEU A 14 SHEET 3 A 3 LEU A 55 ILE A 59 -1 N ALA A 58 O THR A 86 SHEET 1 B 2 PHE A 22 LEU A 24 0 SHEET 2 B 2 ILE A 36 ILE A 39 -1 O ARG A 38 N ARG A 23 CISPEP 1 GLY A 16 PRO A 17 1 -0.06 CISPEP 2 GLY A 18 PRO A 19 1 0.02 CISPEP 3 GLY A 16 PRO A 17 2 -0.02 CISPEP 4 GLY A 18 PRO A 19 2 -0.03 CISPEP 5 GLY A 16 PRO A 17 3 -0.01 CISPEP 6 GLY A 18 PRO A 19 3 0.03 CISPEP 7 GLY A 16 PRO A 17 4 0.02 CISPEP 8 GLY A 18 PRO A 19 4 -0.02 CISPEP 9 GLY A 16 PRO A 17 5 -0.07 CISPEP 10 GLY A 18 PRO A 19 5 0.02 CISPEP 11 GLY A 16 PRO A 17 6 0.04 CISPEP 12 GLY A 18 PRO A 19 6 0.05 CISPEP 13 GLY A 16 PRO A 17 7 0.02 CISPEP 14 GLY A 18 PRO A 19 7 0.03 CISPEP 15 GLY A 16 PRO A 17 8 0.05 CISPEP 16 GLY A 18 PRO A 19 8 0.01 CISPEP 17 GLY A 16 PRO A 17 9 -0.02 CISPEP 18 GLY A 18 PRO A 19 9 -0.04 CISPEP 19 GLY A 16 PRO A 17 10 -0.01 CISPEP 20 GLY A 18 PRO A 19 10 0.04 CISPEP 21 GLY A 16 PRO A 17 11 0.05 CISPEP 22 GLY A 18 PRO A 19 11 -0.01 CISPEP 23 GLY A 16 PRO A 17 12 -0.01 CISPEP 24 GLY A 18 PRO A 19 12 0.05 CISPEP 25 GLY A 16 PRO A 17 13 0.00 CISPEP 26 GLY A 18 PRO A 19 13 -0.02 CISPEP 27 GLY A 16 PRO A 17 14 0.07 CISPEP 28 GLY A 18 PRO A 19 14 0.03 CISPEP 29 GLY A 16 PRO A 17 15 -0.01 CISPEP 30 GLY A 18 PRO A 19 15 -0.02 CISPEP 31 GLY A 16 PRO A 17 16 0.03 CISPEP 32 GLY A 18 PRO A 19 16 -0.07 CISPEP 33 GLY A 16 PRO A 17 17 -0.01 CISPEP 34 GLY A 18 PRO A 19 17 0.06 CISPEP 35 GLY A 16 PRO A 17 18 0.03 CISPEP 36 GLY A 18 PRO A 19 18 -0.09 CISPEP 37 GLY A 16 PRO A 17 19 0.02 CISPEP 38 GLY A 18 PRO A 19 19 0.00 CISPEP 39 GLY A 16 PRO A 17 20 0.00 CISPEP 40 GLY A 18 PRO A 19 20 0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000