PDB Short entry for 1WJQ HEADER PROTEIN BINDING 29-MAY-04 1WJQ TITLE SOLUTION STRUCTURE OF THE THIRD MBT DOMAIN FROM HUMAN KIAA1798 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA1798 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MBT DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FJ20547; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040119-32; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MBT DOMAIN, KIAA1798, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WJQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WJQ 1 VERSN REVDAT 1 29-NOV-04 1WJQ 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD MBT DOMAIN FROM HUMAN JRNL TITL 2 KIAA1798 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WJQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023650. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM MBT DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 49 116.90 -39.33 REMARK 500 1 ASN A 52 126.72 -38.09 REMARK 500 1 ASP A 56 144.55 -35.72 REMARK 500 1 PRO A 82 -169.99 -69.74 REMARK 500 1 PRO A 85 2.96 -69.82 REMARK 500 2 ASP A 24 108.45 -51.38 REMARK 500 2 ASP A 49 130.99 -37.83 REMARK 500 2 ASN A 53 -36.27 -39.41 REMARK 500 2 ASP A 56 161.25 -44.27 REMARK 500 2 VAL A 69 102.85 -58.34 REMARK 500 2 LYS A 74 -34.12 -33.72 REMARK 500 2 PRO A 82 -170.13 -69.71 REMARK 500 2 MET A 89 153.06 -37.72 REMARK 500 2 PRO A 104 -174.65 -69.72 REMARK 500 3 ASP A 24 108.04 -54.88 REMARK 500 3 ASP A 56 139.82 -37.12 REMARK 500 3 PRO A 82 -175.24 -69.74 REMARK 500 3 SER A 92 53.19 -91.57 REMARK 500 4 VAL A 36 108.91 -59.75 REMARK 500 4 ASP A 56 147.37 -34.30 REMARK 500 4 PRO A 85 0.09 -69.79 REMARK 500 4 SER A 92 40.22 39.60 REMARK 500 4 PRO A 100 -177.14 -69.80 REMARK 500 4 PRO A 104 -179.17 -69.77 REMARK 500 5 VAL A 36 105.17 -59.45 REMARK 500 5 ASP A 49 106.87 -44.74 REMARK 500 5 ASP A 56 157.52 -43.06 REMARK 500 5 PRO A 82 -179.56 -69.77 REMARK 500 5 ALA A 91 135.50 -174.58 REMARK 500 5 SER A 92 140.64 -35.39 REMARK 500 5 SER A 105 54.62 39.38 REMARK 500 5 SER A 106 42.41 35.43 REMARK 500 6 LEU A 20 142.03 -170.41 REMARK 500 6 ASP A 24 109.25 -57.43 REMARK 500 6 ASP A 49 122.56 -35.51 REMARK 500 6 TRP A 51 149.46 -36.76 REMARK 500 6 ASP A 56 147.07 -36.77 REMARK 500 6 VAL A 69 91.91 -64.75 REMARK 500 6 LYS A 74 -37.43 -34.22 REMARK 500 6 PRO A 82 -177.80 -69.78 REMARK 500 6 PRO A 85 2.22 -69.78 REMARK 500 6 MET A 89 42.37 38.11 REMARK 500 6 ALA A 91 154.86 -42.52 REMARK 500 6 GLU A 93 42.11 71.49 REMARK 500 7 SER A 5 101.87 -43.97 REMARK 500 7 VAL A 8 143.12 -38.26 REMARK 500 7 ASP A 24 109.14 -52.81 REMARK 500 7 ASP A 49 120.20 -37.08 REMARK 500 7 ASN A 52 163.09 -45.63 REMARK 500 7 ASN A 53 40.67 -82.28 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001766.2 RELATED DB: TARGETDB DBREF 1WJQ A 8 101 UNP Q96JM7 LMBL3_HUMAN 470 563 SEQADV 1WJQ GLY A 1 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 2 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 3 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ GLY A 4 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 5 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 6 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ GLY A 7 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 102 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ GLY A 103 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ PRO A 104 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 105 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ SER A 106 UNP Q96JM7 CLONING ARTIFACT SEQADV 1WJQ GLY A 107 UNP Q96JM7 CLONING ARTIFACT SEQRES 1 A 107 GLY SER SER GLY SER SER GLY VAL LYS PRO PRO HIS GLY SEQRES 2 A 107 PHE GLN LYS LYS MET LYS LEU GLU VAL VAL ASP LYS ARG SEQRES 3 A 107 ASN PRO MET PHE ILE ARG VAL ALA THR VAL ALA ASP THR SEQRES 4 A 107 ASP ASP HIS ARG VAL LYS VAL HIS PHE ASP GLY TRP ASN SEQRES 5 A 107 ASN CYS TYR ASP TYR TRP ILE ASP ALA ASP SER PRO ASP SEQRES 6 A 107 ILE HIS PRO VAL GLY TRP CYS SER LYS THR GLY HIS PRO SEQRES 7 A 107 LEU GLN PRO PRO LEU SER PRO LEU GLU LEU MET GLU ALA SEQRES 8 A 107 SER GLU HIS GLY GLY CYS SER THR PRO GLY SER GLY PRO SEQRES 9 A 107 SER SER GLY HELIX 1 1 ASN A 52 ASP A 56 5 5 HELIX 2 2 GLY A 70 GLY A 76 1 7 SHEET 1 A 5 TYR A 57 ILE A 59 0 SHEET 2 A 5 VAL A 44 HIS A 47 -1 N VAL A 44 O ILE A 59 SHEET 3 A 5 ILE A 31 VAL A 36 -1 N THR A 35 O HIS A 47 SHEET 4 A 5 LYS A 19 VAL A 23 -1 N VAL A 22 O ARG A 32 SHEET 5 A 5 HIS A 67 PRO A 68 -1 O HIS A 67 N GLU A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000