PDB Short entry for 1WJR HEADER PROTEIN BINDING 29-MAY-04 1WJR TITLE SOLUTION STRUCTURE OF THE 2ND MBT DOMAIN FROM HUMAN KIAA1617 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA1617 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MBT DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA FJ13890; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040119-21; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MBT DOMAIN, KIAA1617 PROTEIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WJR 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WJR 1 VERSN REVDAT 1 29-NOV-04 1WJR 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 2ND MBT DOMAIN FROM HUMAN KIAA1617 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WJR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023651. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM MBT DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 121.40 -174.56 REMARK 500 1 VAL A 14 131.13 -35.65 REMARK 500 1 TYR A 46 121.11 -37.36 REMARK 500 1 TYR A 55 42.67 -88.64 REMARK 500 1 LEU A 62 34.58 -91.61 REMARK 500 1 LEU A 66 109.50 -57.41 REMARK 500 1 ARG A 78 109.16 -174.55 REMARK 500 1 ALA A 91 -38.08 -38.02 REMARK 500 1 PHE A 115 47.73 -100.52 REMARK 500 1 ASP A 120 113.74 -37.89 REMARK 500 2 SER A 6 96.58 -54.06 REMARK 500 2 VAL A 14 132.88 -34.54 REMARK 500 2 ASN A 25 108.24 -54.15 REMARK 500 2 PHE A 27 46.11 -92.68 REMARK 500 2 TYR A 55 43.70 -86.94 REMARK 500 2 ASP A 63 147.06 -34.60 REMARK 500 2 ARG A 65 -38.20 -34.50 REMARK 500 2 LEU A 66 95.29 -59.42 REMARK 500 2 LYS A 76 37.58 36.09 REMARK 500 2 TYR A 77 -174.67 -62.32 REMARK 500 2 MET A 79 79.62 -114.10 REMARK 500 2 CYS A 96 -70.40 -59.07 REMARK 500 2 PHE A 115 47.83 -90.03 REMARK 500 2 ASP A 120 29.64 48.00 REMARK 500 3 SER A 6 150.66 -46.35 REMARK 500 3 VAL A 14 132.37 -34.03 REMARK 500 3 TYR A 55 43.30 -86.67 REMARK 500 3 LEU A 62 33.57 -85.05 REMARK 500 3 LEU A 66 95.45 -60.00 REMARK 500 3 GLU A 74 179.90 -52.91 REMARK 500 3 ASN A 75 37.25 -88.36 REMARK 500 3 PRO A 82 -170.61 -69.80 REMARK 500 3 MET A 112 -36.98 -37.08 REMARK 500 3 PHE A 115 43.89 -94.04 REMARK 500 3 SER A 125 119.89 -161.95 REMARK 500 4 SER A 2 111.07 -171.31 REMARK 500 4 VAL A 14 132.90 -34.26 REMARK 500 4 GLN A 24 -62.95 -130.49 REMARK 500 4 ASN A 25 106.29 -49.72 REMARK 500 4 PHE A 27 47.68 -100.55 REMARK 500 4 GLU A 53 53.28 -116.57 REMARK 500 4 SER A 54 -32.73 -132.16 REMARK 500 4 TYR A 55 41.27 -92.98 REMARK 500 4 TYR A 61 -28.78 -37.26 REMARK 500 4 LEU A 62 38.64 -83.70 REMARK 500 4 CYS A 72 43.58 -82.12 REMARK 500 4 GLU A 74 -179.31 -56.79 REMARK 500 4 MET A 79 37.35 -97.32 REMARK 500 4 PRO A 87 11.01 -69.76 REMARK 500 4 ALA A 91 -31.92 -38.16 REMARK 500 REMARK 500 THIS ENTRY HAS 255 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001589.1 RELATED DB: TARGETDB DBREF 1WJR A 8 121 UNP Q5VUG0 SMBT2_HUMAN 192 305 SEQADV 1WJR GLY A 1 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 2 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 3 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR GLY A 4 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 5 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 6 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR GLY A 7 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 122 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR GLY A 123 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR PRO A 124 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 125 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR SER A 126 UNP Q5VUG0 CLONING ARTIFACT SEQADV 1WJR GLY A 127 UNP Q5VUG0 CLONING ARTIFACT SEQRES 1 A 127 GLY SER SER GLY SER SER GLY PRO ILE ASP LEU ILE THR SEQRES 2 A 127 VAL GLY SER LEU ILE GLU LEU GLN ASP SER GLN ASN PRO SEQRES 3 A 127 PHE GLN TYR TRP ILE VAL SER VAL ILE GLU ASN VAL GLY SEQRES 4 A 127 GLY ARG LEU ARG LEU ARG TYR VAL GLY LEU GLU ASP THR SEQRES 5 A 127 GLU SER TYR ASP GLN TRP LEU PHE TYR LEU ASP TYR ARG SEQRES 6 A 127 LEU ARG PRO VAL GLY TRP CYS GLN GLU ASN LYS TYR ARG SEQRES 7 A 127 MET ASP PRO PRO SER GLU ILE TYR PRO LEU LYS MET ALA SEQRES 8 A 127 SER GLU TRP LYS CYS THR LEU GLU LYS SER LEU ILE ASP SEQRES 9 A 127 ALA ALA LYS PHE PRO LEU PRO MET GLU VAL PHE LYS ASP SEQRES 10 A 127 HIS ALA ASP LEU SER GLY PRO SER SER GLY HELIX 1 1 GLY A 7 ILE A 12 1 6 HELIX 2 2 TRP A 71 LYS A 76 1 6 HELIX 3 3 MET A 90 PHE A 108 1 19 HELIX 4 4 PRO A 111 LYS A 116 5 6 SHEET 1 A 2 LEU A 17 GLN A 21 0 SHEET 2 A 2 TYR A 29 SER A 33 -1 O VAL A 32 N ILE A 18 SHEET 1 B 3 ASN A 37 VAL A 38 0 SHEET 2 B 3 ARG A 41 LEU A 44 -1 O ARG A 41 N VAL A 38 SHEET 3 B 3 GLN A 57 PHE A 60 -1 O LEU A 59 N LEU A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000