PDB Short entry for 1WN7 HEADER TRANSFERASE 28-JUL-04 1WN7 TITLE CRYSTAL STRUCTURE OF ARCHAEAL FAMILY B DNA POLYMERASE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAMILY B DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-8C KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KUROITA,H.MATSUMURA,N.YOKOTA,H.HASHIMOTO,T.IMANAKA,T.INOUE,Y.KAI REVDAT 4 25-OCT-23 1WN7 1 REMARK LINK REVDAT 3 13-JUL-11 1WN7 1 VERSN REVDAT 2 24-FEB-09 1WN7 1 VERSN REVDAT 1 02-AUG-05 1WN7 0 JRNL AUTH T.KUROITA,H.MATSUMURA,N.YOKOTA,M.KITABAYASHI,H.HASHIMOTO, JRNL AUTH 2 T.INOUE,T.IMANAKA,Y.KAI JRNL TITL STRUCTURAL MECHANISM FOR COORDINATION OF PROOFREADING AND JRNL TITL 2 POLYMERASE ACTIVITIES IN ARCHAEAL DNA POLYMERASES JRNL REF J.MOL.BIOL. V. 351 291 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16019029 JRNL DOI 10.1016/J.JMB.2005.06.015 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HASHIMOTO,M.NISHIOKA,S.FUJIWARA,M.TAKAGI,T.IMANAKA, REMARK 1 AUTH 2 T.INOUE,Y.KAI REMARK 1 TITL CRYSTAL STRUCTURE OF DNA POLYMERASE FROM HYPERTHERMOPHILIC REMARK 1 TITL 2 ARCHAEON PYROCOCCUS KODAKARAENSIS KOD1 REMARK 1 REF J.MOL.BIOL. V. 306 469 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 11178906 REMARK 1 DOI 10.1006/JMBI.2000.4403 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.68000 REMARK 3 B22 (A**2) : -2.99000 REMARK 3 B33 (A**2) : -13.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 33.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1GCX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1450, NICL2, GLYCEROL, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.17200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.77950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.56550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.77950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.17200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.56550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 667 REMARK 465 ARG A 668 REMARK 465 ASP A 669 REMARK 465 LEU A 670 REMARK 465 LYS A 671 REMARK 465 ASP A 672 REMARK 465 TYR A 673 REMARK 465 LYS A 674 REMARK 465 ALA A 675 REMARK 465 THR A 676 REMARK 465 GLY A 677 REMARK 465 ARG A 689 REMARK 465 GLY A 690 REMARK 465 VAL A 691 REMARK 465 LYS A 692 REMARK 465 ILE A 693 REMARK 465 ARG A 694 REMARK 465 PRO A 695 REMARK 465 GLY A 696 REMARK 465 LYS A 705 REMARK 465 GLY A 706 REMARK 465 SER A 707 REMARK 465 GLY A 708 REMARK 465 ARG A 709 REMARK 465 ILE A 710 REMARK 465 GLY A 711 REMARK 465 ASP A 712 REMARK 465 TYR A 757 REMARK 465 GLN A 758 REMARK 465 LYS A 759 REMARK 465 THR A 760 REMARK 465 ARG A 761 REMARK 465 GLN A 762 REMARK 465 VAL A 763 REMARK 465 GLY A 764 REMARK 465 LEU A 765 REMARK 465 SER A 766 REMARK 465 ALA A 767 REMARK 465 TRP A 768 REMARK 465 LEU A 769 REMARK 465 LYS A 770 REMARK 465 PRO A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 THR A 774 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 396 CG CD1 CD2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 LYS A 559 CG CD CE NZ REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 ILE A 610 CG1 CG2 CD1 REMARK 470 ARG A 613 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 614 CG OD1 OD2 REMARK 470 GLU A 617 CG CD OE1 OE2 REMARK 470 LYS A 652 CG CD CE NZ REMARK 470 VAL A 661 CG1 CG2 REMARK 470 GLU A 664 CG CD OE1 OE2 REMARK 470 GLN A 665 CG CD OE1 NE2 REMARK 470 ILE A 666 CG1 CG2 CD1 REMARK 470 VAL A 680 CG1 CG2 REMARK 470 LYS A 684 CG CD CE NZ REMARK 470 ARG A 685 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 686 CG CD1 CD2 REMARK 470 VAL A 698 CG1 CG2 REMARK 470 ILE A 699 CG1 CG2 CD1 REMARK 470 ILE A 702 CG1 CG2 CD1 REMARK 470 VAL A 703 CG1 CG2 REMARK 470 LEU A 704 CG CD1 CD2 REMARK 470 ILE A 715 CG1 CG2 CD1 REMARK 470 ASP A 718 CG OD1 OD2 REMARK 470 GLU A 719 CG CD OE1 OE2 REMARK 470 PHE A 720 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 723 OG1 CG2 REMARK 470 LYS A 724 CG CD CE NZ REMARK 470 HIS A 725 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 727 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 728 CG OD1 OD2 REMARK 470 GLU A 730 CG CD OE1 OE2 REMARK 470 TYR A 731 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 735 CG OD1 ND2 REMARK 470 VAL A 741 CG1 CG2 REMARK 470 GLU A 742 CG CD OE1 OE2 REMARK 470 ARG A 743 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 37 O HOH A 2062 2.05 REMARK 500 OD2 ASP A 123 O HOH A 2062 2.09 REMARK 500 N GLN A 339 O HOH A 2104 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 22 -112.64 -87.94 REMARK 500 PHE A 26 159.31 -43.98 REMARK 500 LYS A 27 123.51 178.27 REMARK 500 TYR A 37 173.62 178.97 REMARK 500 ASP A 45 2.86 -49.79 REMARK 500 ALA A 47 -0.70 -59.79 REMARK 500 LYS A 52 13.46 -62.54 REMARK 500 THR A 61 -151.81 -97.63 REMARK 500 LYS A 66 -101.78 -61.61 REMARK 500 PRO A 115 106.97 -42.96 REMARK 500 GLU A 147 112.42 -173.45 REMARK 500 GLU A 150 131.69 -19.63 REMARK 500 PHE A 152 133.33 174.60 REMARK 500 LYS A 174 160.82 -46.22 REMARK 500 VAL A 176 -57.06 -146.85 REMARK 500 ASP A 177 72.45 69.19 REMARK 500 SER A 185 -83.33 -93.30 REMARK 500 ASP A 202 66.23 38.50 REMARK 500 PHE A 214 -70.17 -124.06 REMARK 500 TYR A 218 -70.03 -61.26 REMARK 500 ALA A 231 57.50 -91.28 REMARK 500 MET A 244 58.24 -154.62 REMARK 500 ARG A 247 -161.74 -105.09 REMARK 500 VAL A 252 86.35 -152.86 REMARK 500 LYS A 253 136.46 -39.87 REMARK 500 ARG A 255 -165.00 -114.10 REMARK 500 THR A 267 -70.77 -94.16 REMARK 500 THR A 297 41.37 -78.02 REMARK 500 ALA A 298 -33.89 -139.60 REMARK 500 GLU A 300 -61.97 -91.27 REMARK 500 ASN A 304 -1.75 164.54 REMARK 500 SER A 334 -78.83 -55.07 REMARK 500 ARG A 335 -29.40 -35.72 REMARK 500 GLU A 374 -52.50 -27.02 REMARK 500 SER A 383 162.54 -43.59 REMARK 500 ARG A 394 141.25 -34.27 REMARK 500 LEU A 408 -70.35 -51.40 REMARK 500 ASN A 417 55.11 34.12 REMARK 500 ALA A 434 134.36 -35.74 REMARK 500 GLN A 436 -87.55 55.99 REMARK 500 ASP A 444 -71.44 -42.25 REMARK 500 PHE A 448 -75.33 -46.60 REMARK 500 ALA A 469 87.71 -163.92 REMARK 500 THR A 470 -42.51 -159.33 REMARK 500 ILE A 471 -67.23 78.99 REMARK 500 ASP A 472 97.58 -48.85 REMARK 500 TYR A 499 109.08 -58.81 REMARK 500 ALA A 500 -16.07 -49.31 REMARK 500 TRP A 504 47.54 -96.94 REMARK 500 CYS A 506 89.64 -160.60 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1001 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD1 REMARK 620 2 HOH A2013 O 159.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GCX RELATED DB: PDB DBREF 1WN7 A 1 774 PDB 1WN7 1WN7 1 774 SEQRES 1 A 774 MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS SEQRES 2 A 774 PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE SEQRES 3 A 774 LYS ILE GLU TYR ASP ARG THR PHE GLU PRO TYR PHE TYR SEQRES 4 A 774 ALA LEU LEU LYS ASP ASP SER ALA ILE GLU GLU VAL LYS SEQRES 5 A 774 LYS ILE THR ALA GLU ARG HIS GLY THR VAL VAL THR VAL SEQRES 6 A 774 LYS ARG VAL GLU LYS VAL GLN LYS LYS PHE LEU GLY ARG SEQRES 7 A 774 PRO VAL GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN SEQRES 8 A 774 ASP VAL PRO ALA ILE ARG ASP LYS ILE ARG GLU HIS PRO SEQRES 9 A 774 ALA VAL ILE ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA SEQRES 10 A 774 LYS ARG TYR LEU ILE ASP LYS GLY LEU VAL PRO MET GLU SEQRES 11 A 774 GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ASP ILE GLU SEQRES 12 A 774 THR LEU TYR GLU GLU GLY GLU GLU PHE ALA GLU GLY PRO SEQRES 13 A 774 ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG SEQRES 14 A 774 VAL ILE THR TRP LYS ASN VAL ASP LEU PRO TYR VAL ASP SEQRES 15 A 774 VAL VAL SER THR GLU ARG GLU MET ILE LYS ARG PHE LEU SEQRES 16 A 774 ARG VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR SEQRES 17 A 774 TYR ASN GLY ASP ASN PHE ASP PHE ALA TYR LEU LYS LYS SEQRES 18 A 774 ARG CYS GLU LYS LEU GLY ILE ASN PHE ALA LEU GLY ARG SEQRES 19 A 774 ASP GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG SEQRES 20 A 774 PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU SEQRES 21 A 774 TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR SEQRES 22 A 774 THR LEU GLU ALA VAL TYR GLU ALA VAL PHE GLY GLN PRO SEQRES 23 A 774 LYS GLU LYS VAL TYR ALA GLU GLU ILE THR THR ALA TRP SEQRES 24 A 774 GLU THR GLY GLU ASN LEU GLU ARG VAL ALA ARG TYR SER SEQRES 25 A 774 MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU SEQRES 26 A 774 PHE LEU PRO MET GLU ALA GLN LEU SER ARG LEU ILE GLY SEQRES 27 A 774 GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN SEQRES 28 A 774 LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG SEQRES 29 A 774 ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU LYS GLU LEU SEQRES 30 A 774 ALA ARG ARG ARG GLN SER TYR GLU GLY GLY TYR VAL LYS SEQRES 31 A 774 GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU SEQRES 32 A 774 ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS SEQRES 33 A 774 ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS LYS SEQRES 34 A 774 GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS ARG PHE CYS SEQRES 35 A 774 LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY ASP SEQRES 36 A 774 LEU LEU GLU GLU ARG GLN LYS ILE LYS LYS LYS MET LYS SEQRES 37 A 774 ALA THR ILE ASP PRO ILE GLU ARG LYS LEU LEU ASP TYR SEQRES 38 A 774 ARG GLN ARG ALA ILE LYS ILE LEU ALA ASN SER TYR TYR SEQRES 39 A 774 GLY TYR TYR GLY TYR ALA ARG ALA ARG TRP TYR CYS LYS SEQRES 40 A 774 GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLU TYR SEQRES 41 A 774 ILE THR MET THR ILE LYS GLU ILE GLU GLU LYS TYR GLY SEQRES 42 A 774 PHE LYS VAL ILE TYR SER ASP THR ASP GLY PHE PHE ALA SEQRES 43 A 774 THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS SEQRES 44 A 774 ALA MET GLU PHE LEU LYS TYR ILE ASN ALA LYS LEU PRO SEQRES 45 A 774 GLY ALA LEU GLU LEU GLU TYR GLU GLY PHE TYR GLU ARG SEQRES 46 A 774 GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP SEQRES 47 A 774 GLU GLU GLY LYS ILE THR THR ARG GLY LEU GLU ILE VAL SEQRES 48 A 774 ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA SEQRES 49 A 774 ARG VAL LEU GLU ALA LEU LEU LYS ASP GLY ASP VAL GLU SEQRES 50 A 774 LYS ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU SEQRES 51 A 774 SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE HIS SEQRES 52 A 774 GLU GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR SEQRES 53 A 774 GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG SEQRES 54 A 774 GLY VAL LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE SEQRES 55 A 774 VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE SEQRES 56 A 774 PRO PHE ASP GLU PHE ASP PRO THR LYS HIS LYS TYR ASP SEQRES 57 A 774 ALA GLU TYR TYR ILE GLU ASN GLN VAL LEU PRO ALA VAL SEQRES 58 A 774 GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP SEQRES 59 A 774 LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU SER ALA SEQRES 60 A 774 TRP LEU LYS PRO LYS GLY THR HET NI A1001 1 HET GOL A2001 6 HETNAM NI NICKEL (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NI NI 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *277(H2 O) HELIX 1 1 ALA A 47 LYS A 52 1 6 HELIX 2 2 ASP A 92 GLU A 102 1 11 HELIX 3 3 PRO A 115 LYS A 124 1 10 HELIX 4 4 THR A 186 ASP A 202 1 17 HELIX 5 5 PHE A 214 LEU A 226 1 13 HELIX 6 6 LEU A 260 ILE A 268 1 9 HELIX 7 7 THR A 274 GLY A 284 1 11 HELIX 8 8 TYR A 291 GLU A 300 1 10 HELIX 9 9 ASN A 304 GLY A 338 1 35 HELIX 10 10 SER A 340 ARG A 346 1 7 HELIX 11 11 SER A 348 ARG A 364 1 17 HELIX 12 12 ASP A 373 GLN A 382 1 10 HELIX 13 13 SER A 407 HIS A 416 1 10 HELIX 14 14 GLY A 447 LYS A 468 1 22 HELIX 15 15 ASP A 472 ASN A 491 1 20 HELIX 16 16 SER A 492 TYR A 499 1 8 HELIX 17 17 CYS A 506 GLY A 533 1 28 HELIX 18 18 ASP A 552 LEU A 571 1 20 HELIX 19 19 ILE A 618 LEU A 631 1 14 HELIX 20 20 ASP A 635 GLU A 648 1 14 HELIX 21 21 PRO A 657 VAL A 661 5 5 HELIX 22 22 VAL A 680 ARG A 685 1 6 HELIX 23 23 GLN A 736 GLU A 742 1 7 HELIX 24 24 GLY A 749 GLU A 753 5 5 SHEET 1 A 3 ILE A 2 GLU A 10 0 SHEET 2 A 3 LYS A 13 LYS A 21 -1 O PHE A 19 N LEU A 3 SHEET 3 A 3 PHE A 26 ASP A 31 -1 O GLU A 29 N ILE A 18 SHEET 1 B 4 VAL A 68 PHE A 75 0 SHEET 2 B 4 ARG A 78 TYR A 86 -1 O VAL A 82 N VAL A 71 SHEET 3 B 4 TYR A 37 LEU A 42 -1 N PHE A 38 O LEU A 85 SHEET 4 B 4 VAL A 106 TYR A 110 -1 O ASP A 108 N LEU A 41 SHEET 1 C 6 VAL A 181 ASP A 182 0 SHEET 2 C 6 GLY A 167 THR A 172 1 N VAL A 170 O ASP A 182 SHEET 3 C 6 ILE A 157 ASP A 164 -1 N TYR A 162 O ARG A 169 SHEET 4 C 6 MET A 137 THR A 144 -1 N ALA A 139 O ALA A 163 SHEET 5 C 6 VAL A 205 THR A 208 1 O ILE A 207 N LEU A 138 SHEET 6 C 6 ILE A 256 ASP A 259 1 O ILE A 256 N LEU A 206 SHEET 1 D 2 LYS A 240 MET A 244 0 SHEET 2 D 2 ARG A 247 GLU A 251 -1 O GLU A 251 N LYS A 240 SHEET 1 E 6 LYS A 535 ASP A 540 0 SHEET 2 E 6 GLY A 543 THR A 547 -1 O THR A 547 N LYS A 535 SHEET 3 E 6 LEU A 396 PHE A 405 -1 N VAL A 401 O ALA A 546 SHEET 4 E 6 LEU A 577 PHE A 588 -1 O TYR A 583 N ILE A 400 SHEET 5 E 6 TYR A 594 ASP A 598 -1 O ILE A 597 N ARG A 585 SHEET 6 E 6 GLY A 601 ILE A 603 -1 O LYS A 602 N ASP A 598 SHEET 1 F 2 TYR A 431 VAL A 433 0 SHEET 2 F 2 ARG A 440 CYS A 442 -1 O PHE A 441 N ASP A 432 SSBOND 1 CYS A 428 CYS A 442 1555 1555 2.03 SSBOND 2 CYS A 506 CYS A 509 1555 1555 2.05 LINK OD1 ASP A 141 NI NI A1001 1555 1555 1.95 LINK NI NI A1001 O HOH A2013 1555 1555 2.26 SITE 1 AC1 2 ASP A 141 HOH A2013 SITE 1 AC2 2 TYR A 409 ASN A 491 CRYST1 74.344 111.131 111.559 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008964 0.00000