PDB Short entry for 1WO3 HEADER TRANSFERASE 12-AUG-04 1WO3 TITLE SOLUTION STRUCTURE OF MINIMAL MUTANT 1 (MM1): MULTIPLE ALANINE MUTANT TITLE 2 OF NON-NATIVE CHANCE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBP; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THIS SEQUENCE SOURCE 4 OF THE PEPTIDE IS NATURALLY IN HOMO SAPIENS (HUMAN). KEYWDS ZINC FINGER, PROTEIN DESIGN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.K.SHARPE,C.K.LIEW,J.A.WILCE,M.CROSSLEY,J.M.MATTHEWS,J.P.MACKAY REVDAT 3 10-NOV-21 1WO3 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1WO3 1 VERSN REVDAT 1 08-MAR-05 1WO3 0 JRNL AUTH B.K.SHARPE,C.K.LIEW,A.H.KWAN,J.A.WILCE,M.CROSSLEY, JRNL AUTH 2 J.M.MATTHEWS,J.P.MACKAY JRNL TITL ASSESSMENT OF THE ROBUSTNESS OF A SERENDIPITOUS ZINC BINDING JRNL TITL 2 FOLD: MUTAGENESIS AND PROTEIN GRAFTING JRNL REF STRUCTURE V. 13 257 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 15698569 JRNL DOI 10.1016/J.STR.2004.12.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, CNS 1.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 195 REMARK 3 UNAMBIGUOUS NOE-DERIVED DISTANCE CONSTRAINTS, 5 SETS OF REMARK 3 AMBIGUOUS NOE-DERIVED DISTANCE CONSTRAINTS AND 107 DIHEDRAL REMARK 3 ANGLE RESTRAINTS. REMARK 4 REMARK 4 1WO3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023801. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM MM1, 0.5MM TCEP, 1MM REMARK 210 ZNSO4, 5% D2O; 0.4MM MM1, 0.5MM REMARK 210 TCEP, 1MM ZNSO4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D TOCSY; 2D NOESY; E REMARK 210 -COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, DIANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 67.07 -67.12 REMARK 500 1 LYS A 9 122.66 62.94 REMARK 500 1 CYS A 10 -59.04 -120.68 REMARK 500 1 ALA A 11 100.17 -56.49 REMARK 500 1 ALA A 13 35.03 -176.11 REMARK 500 1 HIS A 19 -63.95 -90.07 REMARK 500 1 ALA A 24 65.13 60.29 REMARK 500 2 ALA A 13 35.02 -171.29 REMARK 500 2 ALA A 24 36.44 -144.52 REMARK 500 3 ALA A 13 35.00 -171.36 REMARK 500 3 ALA A 24 36.68 -147.37 REMARK 500 4 ALA A 13 35.02 -171.27 REMARK 500 4 ALA A 24 36.92 -152.89 REMARK 500 5 ALA A 13 35.07 -171.29 REMARK 500 6 ALA A 13 35.06 -171.28 REMARK 500 6 ALA A 24 33.68 -162.14 REMARK 500 7 ALA A 13 35.09 -171.57 REMARK 500 7 ALA A 24 65.21 60.06 REMARK 500 8 ALA A 11 106.99 -57.74 REMARK 500 8 ALA A 13 35.05 -171.61 REMARK 500 8 ALA A 24 32.81 -163.10 REMARK 500 9 ALA A 13 35.12 -171.58 REMARK 500 9 ALA A 24 37.22 -161.39 REMARK 500 10 ALA A 13 35.05 -171.67 REMARK 500 11 ALA A 13 35.07 -171.27 REMARK 500 11 ALA A 24 62.90 -154.85 REMARK 500 12 ALA A 13 35.18 -169.37 REMARK 500 12 ALA A 24 31.22 -163.52 REMARK 500 13 ALA A 13 35.11 -170.58 REMARK 500 13 ALA A 24 32.04 -157.04 REMARK 500 14 ALA A 13 35.13 -168.86 REMARK 500 14 ALA A 24 34.52 -155.72 REMARK 500 15 ALA A 13 35.10 -169.29 REMARK 500 15 ALA A 24 36.60 -173.71 REMARK 500 16 ALA A 13 35.20 -168.72 REMARK 500 16 ALA A 24 36.07 -169.79 REMARK 500 17 ALA A 13 35.13 -170.73 REMARK 500 17 ALA A 24 36.89 -173.73 REMARK 500 18 ALA A 11 106.61 -58.20 REMARK 500 18 ALA A 13 35.13 -171.96 REMARK 500 18 ALA A 24 59.57 -170.16 REMARK 500 19 LYS A 9 -76.48 66.05 REMARK 500 19 CYS A 10 -74.85 66.43 REMARK 500 19 ALA A 13 33.54 -175.31 REMARK 500 19 ALA A 24 65.00 60.64 REMARK 500 20 LYS A 9 -75.36 64.90 REMARK 500 20 CYS A 10 -75.12 66.38 REMARK 500 20 ALA A 13 33.54 -175.26 REMARK 500 20 ALA A 24 32.09 -158.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 26 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 5 SG REMARK 620 2 CYS A 10 SG 102.8 REMARK 620 3 HIS A 19 ND1 107.1 119.4 REMARK 620 4 CYS A 23 SG 106.3 115.2 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 26 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LIQ RELATED DB: PDB REMARK 900 WILD-TYPE SEQUENCE OF NON-NATIVE CHANCE DOMAIN REMARK 900 RELATED ID: 1WO4 RELATED DB: PDB REMARK 900 MINIMAL MUTANT 2 (MM2): MULTIPLE ALANINE MUTANT OF CHANCE REMARK 900 RELATED ID: 1WO5 RELATED DB: PDB REMARK 900 DESIGNED FUNCTIONAL FINGER 2 (DFF2) REMARK 900 RELATED ID: 1WO6 RELATED DB: PDB REMARK 900 DESIGNED FUNCTIONAL FINGER 5 (DFF5) REMARK 900 RELATED ID: 1WO7 RELATED DB: PDB REMARK 900 DESIGNED FUNCTIONAL FINGER 7 (DFF7) DBREF 1WO3 A 1 25 UNP Q92793 CBP_HUMAN 376 400 SEQADV 1WO3 ALA A 1 UNP Q92793 GLU 376 ENGINEERED MUTATION SEQADV 1WO3 SER A 3 UNP Q92793 ARG 378 ENGINEERED MUTATION SEQADV 1WO3 ALA A 6 UNP Q92793 SER 381 ENGINEERED MUTATION SEQADV 1WO3 LYS A 9 UNP Q92793 HIS 384 ENGINEERED MUTATION SEQADV 1WO3 ALA A 11 UNP Q92793 ARG 386 ENGINEERED MUTATION SEQADV 1WO3 ALA A 12 UNP Q92793 THR 387 ENGINEERED MUTATION SEQADV 1WO3 ALA A 13 UNP Q92793 MET 388 ENGINEERED MUTATION SEQADV 1WO3 ALA A 14 UNP Q92793 LYS 389 ENGINEERED MUTATION SEQADV 1WO3 ALA A 17 UNP Q92793 LEU 392 ENGINEERED MUTATION SEQADV 1WO3 ALA A 18 UNP Q92793 ASN 393 ENGINEERED MUTATION SEQADV 1WO3 ALA A 24 UNP Q92793 GLN 399 ENGINEERED MUTATION SEQADV 1WO3 LYS A 25 UNP Q92793 ALA 400 ENGINEERED MUTATION SEQRES 1 A 25 ALA VAL SER ALA CYS ALA LEU PRO LYS CYS ALA ALA ALA SEQRES 2 A 25 ALA ASN VAL ALA ALA HIS MET THR HIS CYS ALA LYS HET ZN A 26 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ALA A 1 CYS A 5 5 5 HELIX 2 2 ASN A 15 THR A 21 1 7 LINK SG CYS A 5 ZN ZN A 26 1555 1555 2.30 LINK SG CYS A 10 ZN ZN A 26 1555 1555 2.30 LINK ND1 HIS A 19 ZN ZN A 26 1555 1555 2.02 LINK SG CYS A 23 ZN ZN A 26 1555 1555 2.32 SITE 1 AC1 5 CYS A 5 LEU A 7 CYS A 10 HIS A 19 SITE 2 AC1 5 CYS A 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000