PDB Short entry for 1WYM HEADER STRUCTURAL PROTEIN 15-FEB-05 1WYM TITLE SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN TRANSGELIN-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSGELIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 SYNONYM: SM22-ALPHA HOMOLOG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAGLN2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040315-88; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CH DOMAIN, F-ACTIN BINDING, ALL HELIX, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, STRUCTURAL KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WYM 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WYM 1 VERSN REVDAT 1 15-AUG-05 1WYM 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN OF HUMAN TRANSGELIN-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WYM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000024157. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM CH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 11 43.47 -88.52 REMARK 500 1 ARG A 31 -72.14 -55.15 REMARK 500 1 ARG A 36 97.08 -33.96 REMARK 500 1 PRO A 37 -168.75 -69.84 REMARK 500 1 LEU A 61 -73.76 -65.57 REMARK 500 1 PHE A 136 149.34 -37.71 REMARK 500 1 LYS A 146 151.30 -49.22 REMARK 500 1 SER A 153 160.04 -47.82 REMARK 500 2 LYS A 9 136.11 -171.36 REMARK 500 2 TYR A 14 157.81 -45.83 REMARK 500 2 LYS A 32 -179.23 -66.90 REMARK 500 2 ASP A 33 74.10 -113.04 REMARK 500 2 ARG A 36 107.82 -52.12 REMARK 500 2 PRO A 37 -165.02 -69.69 REMARK 500 2 LEU A 57 -72.96 -67.81 REMARK 500 2 LEU A 61 -72.58 -62.78 REMARK 500 2 MET A 122 -39.39 -36.87 REMARK 500 2 SER A 147 77.52 -109.88 REMARK 500 3 SER A 3 129.35 -39.09 REMARK 500 3 GLN A 13 171.04 -58.36 REMARK 500 3 ARG A 36 101.66 -40.63 REMARK 500 3 PRO A 37 -164.61 -69.73 REMARK 500 3 PRO A 39 3.07 -69.75 REMARK 500 3 LEU A 61 -74.04 -63.87 REMARK 500 3 ALA A 67 128.84 -37.29 REMARK 500 3 PHE A 136 140.58 -39.80 REMARK 500 3 LYS A 148 163.67 -47.04 REMARK 500 4 SER A 5 41.26 -96.30 REMARK 500 4 GLN A 13 70.91 -105.18 REMARK 500 4 ARG A 36 96.58 -33.38 REMARK 500 4 PRO A 37 -166.15 -69.74 REMARK 500 4 PRO A 39 3.37 -69.81 REMARK 500 4 ARG A 41 -60.06 -99.98 REMARK 500 4 THR A 52 -38.64 -37.19 REMARK 500 4 LEU A 57 -71.30 -70.01 REMARK 500 4 LEU A 61 -72.79 -65.30 REMARK 500 4 GLU A 64 133.56 -39.92 REMARK 500 4 ALA A 67 126.78 -34.70 REMARK 500 4 MET A 77 125.35 -36.68 REMARK 500 5 SER A 2 49.91 39.40 REMARK 500 5 SER A 3 48.12 -87.55 REMARK 500 5 ASP A 33 63.65 -106.66 REMARK 500 5 VAL A 34 -30.41 -36.74 REMARK 500 5 ARG A 36 96.67 -33.52 REMARK 500 5 PRO A 37 -164.62 -69.66 REMARK 500 5 PRO A 39 3.61 -69.78 REMARK 500 5 GLN A 87 -38.18 -38.37 REMARK 500 5 ASP A 107 -33.94 -35.16 REMARK 500 5 MET A 114 35.26 34.62 REMARK 500 5 PHE A 136 148.90 -37.48 REMARK 500 REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000118.1 RELATED DB: TARGETDB DBREF 1WYM A 8 149 UNP P37802 TAGL2_HUMAN 16 157 SEQADV 1WYM GLY A 1 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 2 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 3 UNP P37802 CLONING ARTIFACT SEQADV 1WYM GLY A 4 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 5 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 6 UNP P37802 CLONING ARTIFACT SEQADV 1WYM GLY A 7 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 150 UNP P37802 CLONING ARTIFACT SEQADV 1WYM GLY A 151 UNP P37802 CLONING ARTIFACT SEQADV 1WYM PRO A 152 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 153 UNP P37802 CLONING ARTIFACT SEQADV 1WYM SER A 154 UNP P37802 CLONING ARTIFACT SEQADV 1WYM GLY A 155 UNP P37802 CLONING ARTIFACT SEQRES 1 A 155 GLY SER SER GLY SER SER GLY GLN LYS ILE GLU LYS GLN SEQRES 2 A 155 TYR ASP ALA ASP LEU GLU GLN ILE LEU ILE GLN TRP ILE SEQRES 3 A 155 THR THR GLN CYS ARG LYS ASP VAL GLY ARG PRO GLN PRO SEQRES 4 A 155 GLY ARG GLU ASN PHE GLN ASN TRP LEU LYS ASP GLY THR SEQRES 5 A 155 VAL LEU CYS GLU LEU ILE ASN ALA LEU TYR PRO GLU GLY SEQRES 6 A 155 GLN ALA PRO VAL LYS LYS ILE GLN ALA SER THR MET ALA SEQRES 7 A 155 PHE LYS GLN MET GLU GLN ILE SER GLN PHE LEU GLN ALA SEQRES 8 A 155 ALA GLU ARG TYR GLY ILE ASN THR THR ASP ILE PHE GLN SEQRES 9 A 155 THR VAL ASP LEU TRP GLU GLY LYS ASN MET ALA CYS VAL SEQRES 10 A 155 GLN ARG THR LEU MET ASN LEU GLY GLY LEU ALA VAL ALA SEQRES 11 A 155 ARG ASP ASP GLY LEU PHE SER GLY ASP PRO ASN TRP PHE SEQRES 12 A 155 PRO LYS LYS SER LYS GLU SER GLY PRO SER SER GLY HELIX 1 1 ASP A 15 CYS A 30 1 16 HELIX 2 2 GLY A 40 ASP A 50 1 11 HELIX 3 3 GLY A 51 TYR A 62 1 12 HELIX 4 4 MET A 77 GLY A 96 1 20 HELIX 5 5 GLN A 104 GLU A 110 1 7 HELIX 6 6 ASN A 113 VAL A 129 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000