PDB Short entry for 1X3A
HEADER    STRUCTURAL GENOMICS,UNKNOWN FUNCTION    02-MAY-05   1X3A              
TITLE     SOLUTION STRUCTURE OF THE BSD DOMAIN OF HUMAN SYNAPSE ASSOCIATED      
TITLE    2 PROTEIN 1                                                            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SYNAPSE ASSOCIATED PROTEIN 1;                              
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: BSD DOMAIN;                                                
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: SYAP1;                                                         
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P040531-07;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    SYNAPSE ASSOCIATED PROTEIN 1, BSD DOMAIN, HOMOLOG OF THE DROSOPHILA   
KEYWDS   2 SAP47, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN      
KEYWDS   3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL                 
KEYWDS   4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION               
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN       
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   4   02-MAR-22 1X3A    1       REMARK SEQADV                            
REVDAT   3   24-FEB-09 1X3A    1       VERSN                                    
REVDAT   2   17-JAN-06 1X3A    1       JRNL   TITLE                             
REVDAT   1   02-NOV-05 1X3A    0                                                
JRNL        AUTH   M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA    
JRNL        TITL   SOLUTION STRUCTURE OF THE BSD DOMAIN OF HUMAN SYNAPSE        
JRNL        TITL 2 ASSOCIATED PROTEIN 1                                         
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 2.6, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUENTERT, P. (CYANA)               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1X3A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000024324.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.03MM BSD DOMAIN U-15N, 13C;      
REMARK 210                                   20MM D-TRIS-HCL (PH7.0); 100MM     
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3; 10%   
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.921, CYANA 2.0.17         
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LEAST RESTRAINT VIOLATIONS     
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   6      -60.62   -120.07                                   
REMARK 500  1 ASN A   9      169.27    -49.62                                   
REMARK 500  1 PRO A  33     -172.48    -69.76                                   
REMARK 500  1 PHE A  42      -75.19    -52.76                                   
REMARK 500  1 ASP A  43      -32.61    -34.40                                   
REMARK 500  1 PRO A  68        0.10    -69.76                                   
REMARK 500  1 LEU A  70      -70.43   -108.16                                   
REMARK 500  1 GLU A  73      -39.14    -36.71                                   
REMARK 500  1 THR A  94       40.47    -81.55                                   
REMARK 500  2 SER A   2       41.07    -91.81                                   
REMARK 500  2 ASN A   9       45.88    -84.18                                   
REMARK 500  2 ILE A  14      -39.47    -39.90                                   
REMARK 500  2 GLN A  37       82.90    -62.70                                   
REMARK 500  2 PHE A  38       75.29   -104.22                                   
REMARK 500  2 ASN A  39       75.01    -63.37                                   
REMARK 500  2 PRO A  68        1.62    -69.74                                   
REMARK 500  2 LEU A  70      -71.76    -88.50                                   
REMARK 500  2 SER A  90      -34.96    -38.80                                   
REMARK 500  2 SER A  98      131.45    -36.60                                   
REMARK 500  3 SER A   2       42.15     34.98                                   
REMARK 500  3 ASN A   9       42.24    -91.84                                   
REMARK 500  3 ILE A  14      -34.77    -34.17                                   
REMARK 500  3 LYS A  25      -33.26   -131.14                                   
REMARK 500  3 PHE A  38       51.35     34.54                                   
REMARK 500  3 ASN A  39       93.63    -35.91                                   
REMARK 500  3 PRO A  68        1.64    -69.79                                   
REMARK 500  3 LEU A  70      -70.78    -98.05                                   
REMARK 500  3 SER A  95       56.99    -93.59                                   
REMARK 500  4 PRO A  68        1.74    -69.80                                   
REMARK 500  4 LEU A  70      -67.34    -98.87                                   
REMARK 500  4 SER A  90      -37.21    -39.80                                   
REMARK 500  5 ASP A  10       42.09    -84.49                                   
REMARK 500  5 ILE A  18      -33.43    -37.32                                   
REMARK 500  5 LYS A  25      -37.68   -130.81                                   
REMARK 500  5 PRO A  33     -179.86    -69.76                                   
REMARK 500  5 GLN A  37       45.95    -80.56                                   
REMARK 500  5 ASN A  39       35.94     35.61                                   
REMARK 500  5 PRO A  68        0.19    -69.72                                   
REMARK 500  5 LYS A  69      -62.32    -28.67                                   
REMARK 500  5 PHE A  76      -39.35    -34.68                                   
REMARK 500  5 SER A  98      172.98    -47.65                                   
REMARK 500  6 SER A   6      121.96    -36.93                                   
REMARK 500  6 ASP A  10       84.18    -59.31                                   
REMARK 500  6 LYS A  25      -32.84   -131.26                                   
REMARK 500  6 PRO A  33     -177.22    -69.72                                   
REMARK 500  6 PHE A  38       79.61   -112.02                                   
REMARK 500  6 ASN A  39      106.86    -47.63                                   
REMARK 500  6 PHE A  42      -36.24    -34.30                                   
REMARK 500  6 PRO A  68        2.21    -69.80                                   
REMARK 500  6 LEU A  70      -73.00   -110.24                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     168 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSS001001645.1   RELATED DB: TARGETDB                    
DBREF  1X3A A    8    94  UNP    Q96A49   SYAP1_HUMAN    130    216             
SEQADV 1X3A GLY A    1  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A    2  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A    3  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A GLY A    4  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A    5  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A    6  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A GLY A    7  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A   95  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A GLY A   96  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A PRO A   97  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A   98  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A SER A   99  UNP  Q96A49              CLONING ARTIFACT               
SEQADV 1X3A GLY A  100  UNP  Q96A49              CLONING ARTIFACT               
SEQRES   1 A  100  GLY SER SER GLY SER SER GLY THR ASN ASP GLU GLU THR          
SEQRES   2 A  100  ILE GLN GLN GLN ILE LEU ALA LEU SER ALA ASP LYS ARG          
SEQRES   3 A  100  ASN PHE LEU ARG ASP PRO PRO ALA GLY VAL GLN PHE ASN          
SEQRES   4 A  100  PHE ASP PHE ASP GLN MET TYR PRO VAL ALA LEU VAL MET          
SEQRES   5 A  100  LEU GLN GLU ASP GLU LEU LEU SER LYS MET ARG PHE ALA          
SEQRES   6 A  100  LEU VAL PRO LYS LEU VAL LYS GLU GLU VAL PHE TRP ARG          
SEQRES   7 A  100  ASN TYR PHE TYR ARG VAL SER LEU ILE LYS GLN SER ALA          
SEQRES   8 A  100  GLN LEU THR SER GLY PRO SER SER GLY                          
HELIX    1   1 GLU A   11  ALA A   23  1                                  13    
HELIX    2   2 LYS A   25  ARG A   30  1                                   6    
HELIX    3   3 ASP A   41  ASP A   56  1                                  16    
HELIX    4   4 ASP A   56  LEU A   66  1                                  11    
HELIX    5   5 LYS A   72  THR A   94  1                                  23    
CISPEP   1 VAL A   67    PRO A   68          1        -0.07                     
CISPEP   2 VAL A   67    PRO A   68          2        -0.08                     
CISPEP   3 VAL A   67    PRO A   68          3        -0.02                     
CISPEP   4 VAL A   67    PRO A   68          4        -0.01                     
CISPEP   5 VAL A   67    PRO A   68          5        -0.11                     
CISPEP   6 VAL A   67    PRO A   68          6        -0.04                     
CISPEP   7 VAL A   67    PRO A   68          7         0.01                     
CISPEP   8 VAL A   67    PRO A   68          8        -0.04                     
CISPEP   9 VAL A   67    PRO A   68          9        -0.02                     
CISPEP  10 VAL A   67    PRO A   68         10        -0.01                     
CISPEP  11 VAL A   67    PRO A   68         11        -0.03                     
CISPEP  12 VAL A   67    PRO A   68         12        -0.07                     
CISPEP  13 VAL A   67    PRO A   68         13        -0.11                     
CISPEP  14 VAL A   67    PRO A   68         14        -0.05                     
CISPEP  15 VAL A   67    PRO A   68         15         0.00                     
CISPEP  16 VAL A   67    PRO A   68         16        -0.06                     
CISPEP  17 VAL A   67    PRO A   68         17        -0.04                     
CISPEP  18 VAL A   67    PRO A   68         18        -0.09                     
CISPEP  19 VAL A   67    PRO A   68         19        -0.02                     
CISPEP  20 VAL A   67    PRO A   68         20        -0.03                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000