PDB Short entry for 1X5Z
HEADER    HYDROLASE                               17-MAY-05   1X5Z              
TITLE     SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF              
TITLE    2 HUMAN PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, D                 
TITLE    3 ISOFORM 4 VARIANT                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA;          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN;                               
COMPND   5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA,            
COMPND   6 PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, D ISOFORM 4;            
COMPND   7 EC: 3.1.3.48;                                                        
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PTPRD;                                                         
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050131-05;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    FIBRONECTIN TYPE III DOMAIN CONTAINING PROTEIN, STRUCTURAL            
KEYWDS   2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL             
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL                            
KEYWDS   4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    M.YONEYAMA,K.SAITO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,               
AUTHOR   2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE           
AUTHOR   3 (RSGI)                                                               
REVDAT   3   24-FEB-09 1X5Z    1       VERSN                                    
REVDAT   2   17-JAN-06 1X5Z    1       JRNL   TITLE                             
REVDAT   1   17-NOV-05 1X5Z    0                                                
JRNL        AUTH   M.YONEYAMA,K.SAITO,N.TOCHIO,S.KOSHIBA,M.INOUE,               
JRNL        AUTH 2 T.KIGAWA,S.YOKOYAMA                                          
JRNL        TITL   SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III               
JRNL        TITL 2 DOMAIN OF HUMAN PROTEIN TYROSINE PHOSPHATASE,                
JRNL        TITL 3 RECEPTOR TYPE, D ISOFORM 4 VARIANT                           
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTERT, P.                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1X5Z COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB024421.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.37MM FN3 DOMAIN U-15N, 13C;      
REMARK 210                                   20MM D-TRIS-HCL (PH7.0); 100MM     
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3;       
REMARK 210                                   10% D2O                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 2.6, NMRPIPE               
REMARK 210                                   20020425, NMRVIEW 5.0.4,           
REMARK 210                                   KUJIRA 0.9295, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES         
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   2      -54.78   -129.77                                   
REMARK 500  1 GLN A  20      144.46    -37.51                                   
REMARK 500  1 PRO A  28       92.19    -69.76                                   
REMARK 500  1 PRO A  41     -177.46    -69.82                                   
REMARK 500  1 SER A  43      108.13    -46.49                                   
REMARK 500  1 ASP A  55      103.08    -56.11                                   
REMARK 500  1 HIS A  58       31.62    -91.88                                   
REMARK 500  1 PRO A  68       82.03    -69.73                                   
REMARK 500  1 ASN A  80       51.80     37.25                                   
REMARK 500  1 ALA A  88      108.22   -162.83                                   
REMARK 500  1 PRO A 112       86.48    -69.79                                   
REMARK 500  2 GLN A  10       94.68    -67.65                                   
REMARK 500  2 GLN A  20      145.80    -38.96                                   
REMARK 500  2 PRO A  28       93.13    -69.77                                   
REMARK 500  2 SER A  43      104.79    -49.37                                   
REMARK 500  2 HIS A  58       34.00    -89.65                                   
REMARK 500  2 PRO A  68       83.16    -69.75                                   
REMARK 500  2 ALA A 100      154.53    -42.50                                   
REMARK 500  3 VAL A  17      146.68    -39.23                                   
REMARK 500  3 PRO A  28       96.96    -69.77                                   
REMARK 500  3 PRO A  41     -176.71    -69.85                                   
REMARK 500  3 ASN A  48     -175.75   -176.24                                   
REMARK 500  3 PRO A  68       79.89    -69.74                                   
REMARK 500  3 THR A  70      -34.30   -131.93                                   
REMARK 500  3 PRO A  92        2.02    -69.78                                   
REMARK 500  4 ASP A   8       79.24    -69.93                                   
REMARK 500  4 GLN A  10       41.08   -104.07                                   
REMARK 500  4 THR A  13       31.25    -83.97                                   
REMARK 500  4 GLN A  20      148.29    -34.56                                   
REMARK 500  4 PRO A  41     -165.16    -69.73                                   
REMARK 500  4 SER A  43      102.01    -45.76                                   
REMARK 500  4 ASN A  48     -175.03   -176.60                                   
REMARK 500  4 ASP A  55      100.38    -55.47                                   
REMARK 500  4 PRO A  68       80.48    -69.79                                   
REMARK 500  4 ALA A  88      105.54   -164.68                                   
REMARK 500  4 THR A 106      176.25    -59.60                                   
REMARK 500  4 GLN A 108       86.00    -52.19                                   
REMARK 500  5 THR A  15      126.43    -39.10                                   
REMARK 500  5 GLN A  20      144.05    -35.32                                   
REMARK 500  5 PRO A  28       93.08    -69.69                                   
REMARK 500  5 SER A  43      103.23    -48.77                                   
REMARK 500  5 HIS A  58       30.82    -86.54                                   
REMARK 500  5 PRO A  68       82.29    -69.71                                   
REMARK 500  5 ALA A  88      105.36   -165.85                                   
REMARK 500  5 PRO A  92        2.17    -69.81                                   
REMARK 500  6 SER A   6      113.82   -174.87                                   
REMARK 500  6 GLN A  20      146.13    -34.51                                   
REMARK 500  6 PRO A  21     -176.79    -69.80                                   
REMARK 500  6 SER A  43      103.40    -43.76                                   
REMARK 500  6 PRO A  68       80.27    -69.70                                   
REMARK 500  6 PRO A  92        2.73    -69.69                                   
REMARK 500  6 SER A 109      145.48    -35.11                                   
REMARK 500  7 GLN A  10      119.50   -164.11                                   
REMARK 500  7 GLN A  20      148.81    -39.76                                   
REMARK 500  7 SER A  43       98.35    -45.51                                   
REMARK 500  7 ASP A  55      105.24    -54.45                                   
REMARK 500  7 PRO A  68       81.52    -69.76                                   
REMARK 500  8 SER A   3       80.10    -68.29                                   
REMARK 500  8 PRO A  28       97.34    -69.75                                   
REMARK 500  8 PRO A  41     -178.02    -69.76                                   
REMARK 500  8 SER A  43       96.04    -58.44                                   
REMARK 500  8 THR A  45       98.61    -68.66                                   
REMARK 500  8 PRO A  68       82.07    -69.72                                   
REMARK 500  8 ALA A  88      106.62   -163.75                                   
REMARK 500  8 PRO A  92        2.51    -69.78                                   
REMARK 500  8 THR A  99      175.67    -52.64                                   
REMARK 500  8 GLN A 108       39.00    -85.80                                   
REMARK 500  8 PRO A 112        2.66    -69.76                                   
REMARK 500  9 ILE A  12      -71.92    -75.33                                   
REMARK 500  9 SER A  43       97.84    -45.32                                   
REMARK 500  9 THR A  45       97.13    -68.92                                   
REMARK 500  9 PRO A  68       80.05    -69.80                                   
REMARK 500  9 ALA A  88      107.41   -161.90                                   
REMARK 500  9 SER A 109      107.98    -51.86                                   
REMARK 500 10 ASN A  48     -179.81   -173.77                                   
REMARK 500 10 PRO A  68       80.30    -69.71                                   
REMARK 500 10 ASN A  80       52.96     37.87                                   
REMARK 500 10 ALA A  88      107.11   -164.35                                   
REMARK 500 10 PRO A  92        2.75    -69.71                                   
REMARK 500 10 SER A 109       97.52    -49.17                                   
REMARK 500 11 SER A   2       43.04    -90.56                                   
REMARK 500 11 SER A   5      -44.84   -130.28                                   
REMARK 500 11 VAL A  11      -74.87    -88.20                                   
REMARK 500 11 ILE A  12       95.06    -59.96                                   
REMARK 500 11 ASN A  23       39.20     38.26                                   
REMARK 500 11 PRO A  28       92.16    -69.76                                   
REMARK 500 11 PRO A  41     -175.64    -69.79                                   
REMARK 500 11 ASN A  48     -177.41   -174.64                                   
REMARK 500 11 HIS A  58       34.05    -89.64                                   
REMARK 500 11 PRO A  68       80.86    -69.83                                   
REMARK 500 11 ASN A  80       48.01     37.90                                   
REMARK 500 11 ALA A  88      105.51   -165.45                                   
REMARK 500 12 SER A   2      170.33    -48.42                                   
REMARK 500 12 GLN A  20      148.47    -34.71                                   
REMARK 500 12 PRO A  28       93.26    -69.71                                   
REMARK 500 12 HIS A  58       32.38    -91.74                                   
REMARK 500 12 PRO A  68       80.23    -69.76                                   
REMARK 500 12 PRO A  92        1.14    -69.80                                   
REMARK 500 12 SER A 109       42.51    -83.30                                   
REMARK 500 13 ILE A  12      145.97    -39.31                                   
REMARK 500 13 GLN A  14      112.06   -170.41                                   
REMARK 500 13 SER A  43      100.47    -53.10                                   
REMARK 500 13 THR A  45       97.34    -69.68                                   
REMARK 500 13 HIS A  58       33.65    -84.56                                   
REMARK 500 13 PRO A  68       80.01    -69.78                                   
REMARK 500 13 ALA A  88      105.47   -160.99                                   
REMARK 500 13 PRO A  92        0.94    -69.72                                   
REMARK 500 13 GLN A 108      107.13    -55.05                                   
REMARK 500 14 GLN A  10      116.63   -172.54                                   
REMARK 500 14 GLN A  20      142.82    -39.66                                   
REMARK 500 14 PRO A  28       99.35    -69.80                                   
REMARK 500 14 PRO A  41     -172.60    -69.75                                   
REMARK 500 14 SER A  43      100.41    -40.18                                   
REMARK 500 14 PRO A  68       81.81    -69.77                                   
REMARK 500 14 THR A  99      171.05    -59.50                                   
REMARK 500 15 GLN A  20      142.84    -38.39                                   
REMARK 500 15 SER A  43      104.96    -48.20                                   
REMARK 500 15 HIS A  58       33.41    -88.30                                   
REMARK 500 15 PRO A  68       80.66    -69.68                                   
REMARK 500 15 THR A  70      -37.09   -133.85                                   
REMARK 500 15 ALA A  89      139.62    -33.92                                   
REMARK 500 15 PRO A  92        0.99    -69.75                                   
REMARK 500 16 ASP A   8       44.78   -109.93                                   
REMARK 500 16 GLN A  20      148.50    -35.25                                   
REMARK 500 16 ASN A  23       50.96     38.32                                   
REMARK 500 16 PRO A  28       97.21    -69.72                                   
REMARK 500 16 PRO A  41     -168.40    -69.78                                   
REMARK 500 16 SER A  43       96.05    -59.22                                   
REMARK 500 16 THR A  45       96.49    -69.27                                   
REMARK 500 16 PRO A  68       80.09    -69.79                                   
REMARK 500 16 ASN A  80       51.88     36.76                                   
REMARK 500 16 ALA A  88      106.46   -160.34                                   
REMARK 500 16 GLU A 101      105.20    -59.58                                   
REMARK 500 16 SER A 110      144.50   -170.86                                   
REMARK 500 17 ILE A  12       41.89    -88.51                                   
REMARK 500 17 PRO A  28       99.23    -69.78                                   
REMARK 500 17 SER A  43      106.02    -37.61                                   
REMARK 500 17 ASP A  55      103.02    -53.86                                   
REMARK 500 17 HIS A  58       33.44    -91.73                                   
REMARK 500 17 PRO A  68       80.29    -69.69                                   
REMARK 500 17 ALA A  88      106.38   -163.21                                   
REMARK 500 17 THR A  99     -176.70    -59.71                                   
REMARK 500 18 ILE A   9       48.77     32.81                                   
REMARK 500 18 GLN A  20      145.52    -39.97                                   
REMARK 500 18 SER A  43      127.74    -38.19                                   
REMARK 500 18 ASN A  48     -175.38   -176.41                                   
REMARK 500 18 GLU A  61       95.10    -66.49                                   
REMARK 500 18 PRO A  68       80.00    -69.72                                   
REMARK 500 18 ASN A  80       52.80     34.96                                   
REMARK 500 18 THR A  99     -176.85    -62.06                                   
REMARK 500 18 THR A 106      171.74    -59.97                                   
REMARK 500 19 SER A   6      173.70    -51.93                                   
REMARK 500 19 THR A  15      -68.44    -99.88                                   
REMARK 500 19 GLN A  20      143.07    -34.72                                   
REMARK 500 19 PRO A  41     -179.80    -69.78                                   
REMARK 500 19 SER A  43      109.02    -34.78                                   
REMARK 500 19 HIS A  58       30.75    -92.35                                   
REMARK 500 19 PRO A  68       80.63    -69.65                                   
REMARK 500 19 ALA A  88      106.85   -164.22                                   
REMARK 500 19 PRO A  92        2.54    -69.80                                   
REMARK 500 20 GLN A  20      146.93    -38.10                                   
REMARK 500 20 PRO A  21     -173.65    -69.71                                   
REMARK 500 20 PRO A  28       94.39    -69.80                                   
REMARK 500 20 SER A  43       94.97    -44.17                                   
REMARK 500 20 PRO A  68       80.79    -69.73                                   
REMARK 500 20 THR A  70      -31.75   -131.50                                   
REMARK 500 20 ASN A  80       52.53     39.83                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSO002001101.1   RELATED DB: TARGETDB                    
DBREF  1X5Z A    8   109  UNP    P23468   PTPRD_HUMAN    506    607             
SEQADV 1X5Z GLY A    1  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A    2  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A    3  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z GLY A    4  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A    5  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A    6  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z GLY A    7  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A  110  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z GLY A  111  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z PRO A  112  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A  113  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z SER A  114  UNP  P23468              CLONING ARTIFACT               
SEQADV 1X5Z GLY A  115  UNP  P23468              CLONING ARTIFACT               
SEQRES   1 A  115  GLY SER SER GLY SER SER GLY ASP ILE GLN VAL ILE THR          
SEQRES   2 A  115  GLN THR GLY VAL PRO GLY GLN PRO LEU ASN PHE LYS ALA          
SEQRES   3 A  115  GLU PRO GLU SER GLU THR SER ILE LEU LEU SER TRP THR          
SEQRES   4 A  115  PRO PRO ARG SER ASP THR ILE ALA ASN TYR GLU LEU VAL          
SEQRES   5 A  115  TYR LYS ASP GLY GLU HIS GLY GLU GLU GLN ARG ILE THR          
SEQRES   6 A  115  ILE GLU PRO GLY THR SER TYR ARG LEU GLN GLY LEU LYS          
SEQRES   7 A  115  PRO ASN SER LEU TYR TYR PHE ARG LEU ALA ALA ARG SER          
SEQRES   8 A  115  PRO GLN GLY LEU GLY ALA SER THR ALA GLU ILE SER ALA          
SEQRES   9 A  115  ARG THR MET GLN SER SER GLY PRO SER SER GLY                  
SHEET    1   A 3 LEU A  22  GLU A  27  0                                        
SHEET    2   A 3 SER A  33  THR A  39 -1  O  SER A  37   N  LYS A  25           
SHEET    3   A 3 SER A  71  GLN A  75 -1  O  LEU A  74   N  ILE A  34           
SHEET    1   B 4 THR A  65  ILE A  66  0                                        
SHEET    2   B 4 ASN A  48  LEU A  51 -1  N  TYR A  49   O  ILE A  66           
SHEET    3   B 4 LEU A  87  ARG A  90 -1  O  ARG A  90   N  ASN A  48           
SHEET    4   B 4 LEU A  95  SER A  98 -1  O  GLY A  96   N  ALA A  89           
SHEET    1   C 3 LYS A  54  ASP A  55  0                                        
SHEET    2   C 3 LEU A  82  PHE A  85 -1  O  TYR A  84   N  LYS A  54           
SHEET    3   C 3 ILE A 102  ARG A 105 -1  O  ILE A 102   N  PHE A  85           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000