PDB Short entry for 1X62
HEADER    STRUCTURAL PROTEIN                      17-MAY-05   1X62              
TITLE     SOLUTION STRUCTURE OF THE LIM DOMAIN OF CARBOXYL TERMINAL             
TITLE    2 LIM DOMAIN PROTEIN 1                                                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: C-TERMINAL LIM DOMAIN PROTEIN 1;                           
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: LIM DOMAIN;                                                
COMPND   5 SYNONYM: LIM DOMAIN PROTEIN CLP-36, ELFIN;                           
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PDLIM1, CLIM1, CLP36;                                          
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P040830-06;                               
SOURCE   8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS                           
KEYWDS    LIM DOMAIN, PDZ AND LIM DOMAIN PROTEIN 1, LIM DOMAIN                  
KEYWDS   2 PROTEIN CLP-36, C-TERMINAL LIM DOMAIN PROTEIN 1,                     
KEYWDS   3 CONTRACTILE PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL           
KEYWDS   4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,               
KEYWDS   5 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,               
KEYWDS   6 STRUCTURAL PROTEIN                                                   
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL             
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   2   24-FEB-09 1X62    1       VERSN                                    
REVDAT   1   17-NOV-05 1X62    0                                                
JRNL        AUTH   X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA                     
JRNL        TITL   SOLUTION STRUCTURE OF THE LIM DOMAIN OF CARBOXYL             
JRNL        TITL 2 TERMINAL LIM DOMAIN PROTEIN 1                                
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTERT,P.                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1X62 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB024424.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.18MM 13C,15N-LABELED             
REMARK 210                                   PROTEIN; 20MM D-TRIS-              
REMARK 210                                   HCL(PH7.0); 100MM NACL; 1MM D-     
REMARK 210                                   DTT; 0.02% NAN3, 0.01MM ZNCL2      
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ, 900 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR 6.1C, NMRPIPE 20031121,       
REMARK 210                                   NMRVIEW 5.0.4, KUJIRA 0.9296,      
REMARK 210                                   CYANA 2.0.17                       
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES        
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY;                
REMARK 210  SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY                        
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A  16       91.70    -69.76                                   
REMARK 500  1 ARG A  33      -72.04    -31.97                                   
REMARK 500  1 CYS A  47      -63.34    -93.83                                   
REMARK 500  1 GLU A  66      -36.89    -33.41                                   
REMARK 500  1 PRO A  76     -179.32    -69.75                                   
REMARK 500  2 ARG A  33      -76.06    -32.10                                   
REMARK 500  2 TYR A  42        6.18    -69.85                                   
REMARK 500  2 ASN A  50      107.64    -55.22                                   
REMARK 500  2 GLN A  53      -60.81    -97.54                                   
REMARK 500  2 PRO A  76        2.78    -69.75                                   
REMARK 500  3 ARG A  33      -72.70    -32.05                                   
REMARK 500  3 TYR A  42      -19.09    -45.26                                   
REMARK 500  3 GLN A  53      -65.39    -92.81                                   
REMARK 500  3 VAL A  73      -25.11    -39.96                                   
REMARK 500  4 PRO A  16       95.02    -69.77                                   
REMARK 500  4 ARG A  33      -72.68    -32.01                                   
REMARK 500  4 CYS A  47      -63.87    -92.62                                   
REMARK 500  4 GLU A  66      -39.75    -33.97                                   
REMARK 500  5 PRO A  16       91.23    -69.77                                   
REMARK 500  5 ARG A  33      -74.24    -32.61                                   
REMARK 500  5 CYS A  47      -60.81    -91.52                                   
REMARK 500  6 LYS A  20      -70.43    -66.08                                   
REMARK 500  6 ARG A  33      -74.49    -31.99                                   
REMARK 500  6 CYS A  47      -60.44    -90.17                                   
REMARK 500  6 ASN A  50      108.74    -57.15                                   
REMARK 500  6 PRO A  76     -178.15    -69.72                                   
REMARK 500  7 ARG A  33      -73.68    -32.26                                   
REMARK 500  7 CYS A  47      -63.88    -95.94                                   
REMARK 500  7 ASN A  50      109.90    -58.97                                   
REMARK 500  8 CYS A  21      -69.06    -94.43                                   
REMARK 500  8 ARG A  33      -74.15    -32.44                                   
REMARK 500  8 CYS A  47      -62.44    -94.26                                   
REMARK 500  9 PRO A  16       92.50    -69.78                                   
REMARK 500  9 ARG A  33      -73.59    -32.01                                   
REMARK 500  9 CYS A  47      -64.13    -92.70                                   
REMARK 500  9 GLN A  53      -61.52    -94.66                                   
REMARK 500 10 ARG A  33      -75.26    -32.02                                   
REMARK 500 10 PRO A  76       11.66    -69.73                                   
REMARK 500 11 PRO A  16       97.30    -69.76                                   
REMARK 500 11 ARG A  33      -76.04    -32.01                                   
REMARK 500 12 CYS A  21      -67.35    -97.59                                   
REMARK 500 12 ARG A  33      -73.44    -32.00                                   
REMARK 500 12 CYS A  47      -62.38    -93.68                                   
REMARK 500 12 ASN A  50      109.19    -58.60                                   
REMARK 500 13 ARG A  33      -73.79    -33.30                                   
REMARK 500 14 PRO A  16       94.16    -69.76                                   
REMARK 500 14 ARG A  33      -73.48    -32.02                                   
REMARK 500 14 CYS A  47      -64.42    -92.56                                   
REMARK 500 14 GLU A  66      -39.79    -32.71                                   
REMARK 500 15 ASP A  34       28.89     32.66                                   
REMARK 500 15 CYS A  47      -62.43    -93.30                                   
REMARK 500 15 ALA A  69      -39.97    -37.88                                   
REMARK 500 16 PRO A  16       94.35    -69.79                                   
REMARK 500 16 ARG A  33      -73.06    -32.04                                   
REMARK 500 16 CYS A  47      -61.76    -91.19                                   
REMARK 500 16 GLU A  66      -36.59    -32.05                                   
REMARK 500 17 CYS A  21      -68.78    -97.34                                   
REMARK 500 17 THR A  23      -68.74    -97.99                                   
REMARK 500 17 ILE A  25      102.04    -55.81                                   
REMARK 500 17 ARG A  33      -74.72    -31.96                                   
REMARK 500 17 CYS A  47      -64.19    -94.77                                   
REMARK 500 17 VAL A  73      -31.13    -36.13                                   
REMARK 500 18 CYS A  21      -63.67    -95.53                                   
REMARK 500 18 ARG A  33      -73.28    -31.96                                   
REMARK 500 18 CYS A  47      -64.11    -94.03                                   
REMARK 500 19 PRO A  16       96.11    -69.76                                   
REMARK 500 19 ARG A  33      -73.21    -31.96                                   
REMARK 500 19 CYS A  47      -63.14    -93.81                                   
REMARK 500 19 ASN A  50      109.78    -54.59                                   
REMARK 500 19 PRO A  76        2.65    -69.70                                   
REMARK 500 20 CYS A  21      -69.58    -96.60                                   
REMARK 500 20 ARG A  33      -73.76    -31.96                                   
REMARK 500 20 CYS A  47      -66.46    -92.65                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620  (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;              
REMARK 620  SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                            
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  ZN A 201  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  18   SG                                                     
REMARK 620 2 CYS A  21   SG   93.6                                              
REMARK 620 3 HIS A  38   ND1 104.9 108.3                                        
REMARK 620 4 CYS A  41   SG  105.8 116.7 122.5                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  ZN A 401  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  44   SG                                                     
REMARK 620 2 CYS A  47   SG  105.3                                              
REMARK 620 3 CYS A  65   SG  104.5 107.3                                        
REMARK 620 4 HIS A  68   ND1 128.0 103.9 106.5                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201                  
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSI002002948.1   RELATED DB: TARGETDB                    
DBREF  1X62 A    8    73  UNP    O00151   PDLI1_HUMAN    249    314             
SEQADV 1X62 GLY A    1  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A    2  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A    3  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 GLY A    4  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A    5  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A    6  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 GLY A    7  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A   74  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 GLY A   75  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 PRO A   76  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A   77  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 SER A   78  UNP  O00151              CLONING ARTIFACT               
SEQADV 1X62 GLY A   79  UNP  O00151              CLONING ARTIFACT               
SEQRES   1 A   79  GLY SER SER GLY SER SER GLY SER ILE GLY ASN ALA GLN          
SEQRES   2 A   79  LYS LEU PRO MET CYS ASP LYS CYS GLY THR GLY ILE VAL          
SEQRES   3 A   79  GLY VAL PHE VAL LYS LEU ARG ASP ARG HIS ARG HIS PRO          
SEQRES   4 A   79  GLU CYS TYR VAL CYS THR ASP CYS GLY THR ASN LEU LYS          
SEQRES   5 A   79  GLN LYS GLY HIS PHE PHE VAL GLU ASP GLN ILE TYR CYS          
SEQRES   6 A   79  GLU LYS HIS ALA ARG GLU ARG VAL SER GLY PRO SER SER          
SEQRES   7 A   79  GLY                                                          
HET     ZN  A 201       1                                                       
HET     ZN  A 401       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    2(ZN 2+)                                                     
HELIX    1   1 ASN A   50  GLY A   55  1                                   6    
HELIX    2   2 CYS A   65  SER A   74  1                                  10    
SHEET    1   A 2 VAL A  30  LYS A  31  0                                        
SHEET    2   A 2 HIS A  36  ARG A  37 -1  O  ARG A  37   N  VAL A  30           
SHEET    1   B 2 PHE A  57  PHE A  58  0                                        
SHEET    2   B 2 ILE A  63  TYR A  64 -1  O  TYR A  64   N  PHE A  57           
LINK        ZN    ZN A 201                 SG  CYS A  18     1555   1555  2.34  
LINK        ZN    ZN A 201                 SG  CYS A  21     1555   1555  2.32  
LINK        ZN    ZN A 201                 ND1 HIS A  38     1555   1555  2.08  
LINK        ZN    ZN A 201                 SG  CYS A  41     1555   1555  2.38  
LINK        ZN    ZN A 401                 SG  CYS A  44     1555   1555  2.33  
LINK        ZN    ZN A 401                 SG  CYS A  47     1555   1555  2.33  
LINK        ZN    ZN A 401                 SG  CYS A  65     1555   1555  2.33  
LINK        ZN    ZN A 401                 ND1 HIS A  68     1555   1555  2.03  
SITE     1 AC1  4 CYS A  18  CYS A  21  HIS A  38  CYS A  41                    
SITE     1 AC2  5 CYS A  44  ASP A  46  CYS A  47  CYS A  65                    
SITE     2 AC2  5 HIS A  68                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000