PDB Short entry for 1XMN HEADER HYDROLASE/HYDROLASE INHIBITOR 04-OCT-04 1XMN TITLE CRYSTAL STRUCTURE OF THROMBIN BOUND TO HEPARIN CAVEAT 1XMN NAG J 1 HAS WRONG CHIRALITY AT ATOM C1 NAG L 1 HAS WRONG CAVEAT 2 1XMN CHIRALITY AT ATOM C1 NAG M 1 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 1XMN NAG N 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: COAGULATION FACTOR II; COMPND 5 EC: 3.4.21.5; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 8 CHAIN: B, D, F, H; COMPND 9 SYNONYM: COAGULATION FACTOR II; COMPND 10 EC: 3.4.21.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.J.CARTER,E.CAMA,J.A.HUNTINGTON REVDAT 6 25-OCT-23 1XMN 1 HETSYN REVDAT 5 29-JUL-20 1XMN 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 1XMN 1 VERSN REVDAT 3 24-FEB-09 1XMN 1 VERSN REVDAT 2 08-MAR-05 1XMN 1 JRNL REVDAT 1 23-NOV-04 1XMN 0 JRNL AUTH W.J.CARTER,E.CAMA,J.A.HUNTINGTON JRNL TITL CRYSTAL STRUCTURE OF THROMBIN BOUND TO HEPARIN JRNL REF J.BIOL.CHEM. V. 280 2745 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15548541 JRNL DOI 10.1074/JBC.M411606200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 118505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2411 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 411 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9155 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 511 REMARK 3 SOLVENT ATOMS : 750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XMN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9781 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, TRUNCATE REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : 0.43800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1PPB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE, GLYCEROL, PH REMARK 280 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.42050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L, M, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1H REMARK 465 PHE A 1G REMARK 465 GLY A 1F REMARK 465 GLY A 14M REMARK 465 ARG A 15 REMARK 465 VAL B 147E REMARK 465 GLY B 148 REMARK 465 GLU B 247 REMARK 465 THR C 1H REMARK 465 PHE C 1G REMARK 465 GLY C 1F REMARK 465 ARG C 15 REMARK 465 VAL D 147E REMARK 465 GLY D 148 REMARK 465 LYS D 149 REMARK 465 GLY D 150 REMARK 465 GLU D 247 REMARK 465 THR E 1H REMARK 465 PHE E 1G REMARK 465 GLY E 1F REMARK 465 SER E 1E REMARK 465 GLY E 1D REMARK 465 GLY E 14M REMARK 465 ARG E 15 REMARK 465 ALA F 147C REMARK 465 ASN F 147D REMARK 465 VAL F 147E REMARK 465 GLY F 148 REMARK 465 LYS F 149 REMARK 465 THR G 1H REMARK 465 PHE G 1G REMARK 465 GLY G 1F REMARK 465 SER G 1E REMARK 465 ARG G 15 REMARK 465 ALA H 147C REMARK 465 ASN H 147D REMARK 465 VAL H 147E REMARK 465 GLY H 148 REMARK 465 LYS H 149 REMARK 465 GLU H 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 77A CG CD NE CZ NH1 NH2 REMARK 470 LYS B 110 CD CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 236 CD CE NZ REMARK 470 SER C 1E OG REMARK 470 GLU C 1C CG CD OE1 OE2 REMARK 470 LYS D 110 CD CE NZ REMARK 470 LYS D 145 CD CE NZ REMARK 470 LYS D 236 CD CE NZ REMARK 470 LYS D 240 CE NZ REMARK 470 ASP E 14L CG OD1 OD2 REMARK 470 LYS F 60F CG CD CE NZ REMARK 470 ARG F 77A CG CD NE CZ NH1 NH2 REMARK 470 LYS F 110 CD CE NZ REMARK 470 ARG F 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 145 CE NZ REMARK 470 ARG H 77A CG CD NE CZ NH1 NH2 REMARK 470 LYS H 110 CE NZ REMARK 470 LYS H 145 CD CE NZ REMARK 470 LYS H 236 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 57 NE2 HIS B 57 CD2 -0.076 REMARK 500 HIS D 57 NE2 HIS D 57 CD2 -0.073 REMARK 500 HIS F 57 NE2 HIS F 57 CD2 -0.075 REMARK 500 HIS H 57 NE2 HIS H 57 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS B 57 CE1 - NE2 - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 HIS D 57 CE1 - NE2 - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 HIS F 57 CE1 - NE2 - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 HIS H 57 CE1 - NE2 - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 1C -46.46 -137.23 REMARK 500 PHE A 7 -83.98 -129.10 REMARK 500 TYR B 60A 79.94 -157.19 REMARK 500 ASN B 60G 77.86 -163.41 REMARK 500 ASN B 78 13.48 59.96 REMARK 500 ILE B 79 -61.05 -123.12 REMARK 500 GLU B 97A -83.69 -126.37 REMARK 500 SER B 214 -56.46 -120.50 REMARK 500 GLU C 1C -48.87 -150.32 REMARK 500 PHE C 7 -84.61 -127.34 REMARK 500 TYR D 60A 83.22 -154.79 REMARK 500 ASN D 60G 76.24 -158.73 REMARK 500 ASN D 78 15.51 58.85 REMARK 500 ILE D 79 -61.39 -125.25 REMARK 500 GLU D 97A -77.74 -126.42 REMARK 500 PHE E 7 -87.27 -130.81 REMARK 500 TYR F 60A 77.41 -155.60 REMARK 500 ASN F 60G 85.56 -159.05 REMARK 500 HIS F 71 -55.48 -124.11 REMARK 500 ARG F 73 -49.23 -26.83 REMARK 500 ARG F 75 51.99 -159.46 REMARK 500 TYR F 76 132.06 9.23 REMARK 500 ARG F 77A -135.96 9.60 REMARK 500 ASN F 78 37.18 -90.70 REMARK 500 ILE F 79 -64.90 -103.03 REMARK 500 GLU F 97A -68.93 -120.95 REMARK 500 ASP F 189 165.35 177.86 REMARK 500 GLU G 1C -41.52 -145.45 REMARK 500 PHE G 7 -82.96 -130.80 REMARK 500 GLU H 39 133.96 -170.45 REMARK 500 TYR H 60A 85.59 -156.51 REMARK 500 ASN H 60G 73.82 -160.74 REMARK 500 HIS H 71 -55.26 -123.32 REMARK 500 ARG H 73 -22.71 -32.75 REMARK 500 THR H 74 -46.97 -131.62 REMARK 500 TYR H 76 148.19 -21.89 REMARK 500 ASN H 78 16.83 56.94 REMARK 500 ILE H 79 -66.45 -126.98 REMARK 500 GLU H 97A -65.26 -125.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B 57 11.76 REMARK 500 HIS D 57 11.48 REMARK 500 HIS F 57 12.35 REMARK 500 HIS H 57 13.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 RESIDUES SGN B 2-IDS B 7 AND SGN D 2-SGN D 6 ARE HEPARIN. REMARK 600 HEPARIN OBTAINED FROM LUNG MUCOSA OF SUS SCROFA, REMARK 600 AND DEPOLYMERIZED USING HEPARINASE 1. REMARK 600 REMARK 600 THE INHIBITOR 0G6 IS COVALENTLY CONNECTED TO ACTIVE_SITE REMARK 600 RESIDUES: REMARK 600 1) VIA A HEMIKETAL GROUP TO OG SER 195 IN CHAINS B, D, F, H, REMARK 600 2) VIA A METHYLENE GROUP TO NE2 HIS 57 IN CHAINS B, D, F, H. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SGN I 6 REMARK 610 SGN K 5 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B3004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 221A O REMARK 620 2 LYS B 224 O 88.7 REMARK 620 3 HOH B3043 O 155.4 71.9 REMARK 620 4 HOH B3046 O 105.5 165.3 95.2 REMARK 620 5 HOH B3047 O 85.4 97.4 82.3 87.7 REMARK 620 6 HOH B3075 O 103.0 75.6 87.1 97.1 168.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D3001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG D 221A O REMARK 620 2 LYS D 224 O 88.5 REMARK 620 3 HOH D3041 O 85.4 93.0 REMARK 620 4 HOH D3042 O 107.0 164.4 88.6 REMARK 620 5 HOH D3043 O 154.6 69.4 83.6 95.5 REMARK 620 6 HOH D3047 O 97.4 79.3 171.7 97.9 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F3002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG F 221A O REMARK 620 2 LYS F 224 O 82.9 REMARK 620 3 HOH F3018 O 89.6 87.6 REMARK 620 4 HOH F3027 O 146.2 65.1 78.8 REMARK 620 5 HOH F3040 O 114.2 161.5 98.7 98.9 REMARK 620 6 HOH F3046 O 91.8 73.9 161.1 89.7 97.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H3003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG H 221A O REMARK 620 2 LYS H 224 O 85.1 REMARK 620 3 HOH H3027 O 155.7 71.8 REMARK 620 4 HOH H3028 O 89.7 91.2 83.4 REMARK 620 5 HOH H3055 O 91.0 76.8 91.0 167.9 REMARK 620 6 HOH H3060 O 111.0 162.0 92.9 96.6 94.5 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 B 1 REMARK 630 0G6 D 1 REMARK 630 0G6 F 1 REMARK 630 0G6 H 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PPB RELATED DB: PDB REMARK 900 ORIGINAL PPACK INHIBITED THROMBIN STRUCTURE DBREF 1XMN A 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1XMN C 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1XMN E 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1XMN G 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 1XMN B 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1XMN D 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1XMN F 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 1XMN H 16 247 UNP P00734 THRB_HUMAN 364 622 SEQRES 1 A 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 A 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 A 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 C 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 C 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 D 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 D 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 D 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 D 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 D 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 D 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 D 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 D 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 D 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 D 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 D 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 D 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 D 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 D 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 D 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 D 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 D 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 D 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 D 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 D 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 E 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 E 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 E 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 F 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 F 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 F 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 F 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 F 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 F 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 F 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 F 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 F 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 F 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 F 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 F 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 F 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 F 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 F 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 F 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 F 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 F 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 F 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 F 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 G 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 G 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 G 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU MODRES 1XMN ASN B 60G ASN GLYCOSYLATION SITE MODRES 1XMN ASN D 60G ASN GLYCOSYLATION SITE MODRES 1XMN ASN F 60G ASN GLYCOSYLATION SITE MODRES 1XMN ASN H 60G ASN GLYCOSYLATION SITE HET IDS I 1 17 HET SGN I 2 19 HET IDS I 3 16 HET SGN I 4 19 HET IDS I 5 16 HET SGN I 6 18 HET NAG J 1 14 HET NAG J 2 14 HET SGN K 1 20 HET IDS K 2 16 HET SGN K 3 19 HET IDS K 4 16 HET SGN K 5 18 HET NAG L 1 14 HET NDG L 2 14 HET NAG M 1 14 HET NDG M 2 14 HET NAG N 1 14 HET NAG N 2 14 HET BMA N 3 11 HET MAN N 4 11 HET MAN N 5 11 HET 0G6 B 1 30 HET NA B3004 1 HET GOL B1001 6 HET GOL B1008 6 HET 0G6 D 1 30 HET NA D3001 1 HET GOL D1002 6 HET GOL D1004 6 HET 0G6 F 1 30 HET NA F3002 1 HET GOL F1003 6 HET GOL F1006 6 HET GOL F1007 6 HET 0G6 H 1 30 HET NA H3003 1 HET GOL H1005 6 HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN 0G6 PPACK HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 IDS 5(C6 H10 O10 S) FORMUL 9 SGN 6(C6 H13 N O11 S2) FORMUL 10 NAG 6(C8 H15 N O6) FORMUL 12 NDG 2(C8 H15 N O6) FORMUL 14 BMA C6 H12 O6 FORMUL 14 MAN 2(C6 H12 O6) FORMUL 15 0G6 4(C21 H34 CL N6 O3 1+) FORMUL 16 NA 4(NA 1+) FORMUL 17 GOL 8(C3 H8 O3) FORMUL 31 HOH *750(H2 O) HELIX 1 1 PHE A 7 SER A 11 5 5 HELIX 2 2 THR A 14B TYR A 14J 1 9 HELIX 3 3 ALA B 55 CYS B 58 5 4 HELIX 4 4 PRO B 60B ASP B 60E 5 4 HELIX 5 5 THR B 60I ASN B 62 5 3 HELIX 6 6 ASP B 125 LEU B 130 1 9 HELIX 7 7 GLU B 164 SER B 171 1 8 HELIX 8 8 LYS B 185 GLY B 186C 5 5 HELIX 9 9 LEU B 234 GLY B 246 1 13 HELIX 10 10 PHE C 7 SER C 11 5 5 HELIX 11 11 THR C 14B TYR C 14J 1 9 HELIX 12 12 ALA D 55 CYS D 58 5 4 HELIX 13 13 PRO D 60B ASP D 60E 5 4 HELIX 14 14 THR D 60I ASN D 62 5 3 HELIX 15 15 ASP D 125 LEU D 130 1 9 HELIX 16 16 GLU D 164 SER D 171 1 8 HELIX 17 17 LYS D 185 GLY D 186C 5 5 HELIX 18 18 LEU D 234 GLY D 246 1 13 HELIX 19 19 PHE E 7 SER E 11 5 5 HELIX 20 20 THR E 14B TYR E 14J 1 9 HELIX 21 21 ALA F 55 CYS F 58 5 4 HELIX 22 22 PRO F 60B ASP F 60E 5 4 HELIX 23 23 THR F 60I ASN F 62 5 3 HELIX 24 24 ASP F 125 LEU F 130 1 9 HELIX 25 25 GLU F 164 SER F 171 1 8 HELIX 26 26 LEU F 234 GLY F 246 1 13 HELIX 27 27 PHE G 7 SER G 11 5 5 HELIX 28 28 THR G 14B TYR G 14J 1 9 HELIX 29 29 ALA H 55 CYS H 58 5 4 HELIX 30 30 PRO H 60B ASP H 60E 5 4 HELIX 31 31 THR H 60I ASN H 62 5 3 HELIX 32 32 ASP H 125 LEU H 130 1 9 HELIX 33 33 GLU H 164 SER H 171 1 8 HELIX 34 34 LYS H 185 GLY H 186C 5 5 HELIX 35 35 LEU H 234 GLY H 246 1 13 SHEET 1 A 7 SER B 20 ASP B 21 0 SHEET 2 A 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 A 7 LYS B 135 GLY B 140 -1 N VAL B 138 O VAL B 158 SHEET 4 A 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 A 7 TRP B 207 TRP B 215 -1 O TYR B 208 N MET B 201 SHEET 6 A 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 7 A 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 B 7 GLN B 30 ARG B 35 0 SHEET 2 B 7 GLU B 39 LEU B 46 -1 O GLU B 39 N ARG B 35 SHEET 3 B 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 4 B 7 ALA B 104 LEU B 108 -1 O MET B 106 N VAL B 52 SHEET 5 B 7 LYS B 81 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 6 B 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 7 B 7 GLN B 30 ARG B 35 -1 N PHE B 34 O LEU B 65 SHEET 1 C 2 LEU B 60 TYR B 60A 0 SHEET 2 C 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SHEET 1 D 7 SER D 20 ASP D 21 0 SHEET 2 D 7 GLN D 156 PRO D 161 -1 O VAL D 157 N SER D 20 SHEET 3 D 7 LYS D 135 GLY D 140 -1 N GLY D 136 O LEU D 160 SHEET 4 D 7 PRO D 198 LYS D 202 -1 O VAL D 200 N ARG D 137 SHEET 5 D 7 TRP D 207 TRP D 215 -1 O TYR D 208 N MET D 201 SHEET 6 D 7 GLY D 226 HIS D 230 -1 O PHE D 227 N TRP D 215 SHEET 7 D 7 MET D 180 ALA D 183 -1 N PHE D 181 O TYR D 228 SHEET 1 E 7 GLN D 30 ARG D 35 0 SHEET 2 E 7 GLU D 39 LEU D 46 -1 O GLU D 39 N ARG D 35 SHEET 3 E 7 TRP D 51 THR D 54 -1 O LEU D 53 N SER D 45 SHEET 4 E 7 ALA D 104 LEU D 108 -1 O MET D 106 N VAL D 52 SHEET 5 E 7 LYS D 81 ILE D 90 -1 N GLU D 86 O LYS D 107 SHEET 6 E 7 LEU D 64 ILE D 68 -1 N ILE D 68 O LYS D 81 SHEET 7 E 7 GLN D 30 ARG D 35 -1 N PHE D 34 O LEU D 65 SHEET 1 F 2 LEU D 60 TYR D 60A 0 SHEET 2 F 2 LYS D 60F ASN D 60G-1 O LYS D 60F N TYR D 60A SHEET 1 G 7 SER F 20 ASP F 21 0 SHEET 2 G 7 GLN F 156 PRO F 161 -1 O VAL F 157 N SER F 20 SHEET 3 G 7 LYS F 135 GLY F 140 -1 N GLY F 136 O LEU F 160 SHEET 4 G 7 PRO F 198 LYS F 202 -1 O VAL F 200 N ARG F 137 SHEET 5 G 7 TRP F 207 TRP F 215 -1 O TYR F 208 N MET F 201 SHEET 6 G 7 GLY F 226 HIS F 230 -1 O PHE F 227 N TRP F 215 SHEET 7 G 7 MET F 180 ALA F 183 -1 N PHE F 181 O TYR F 228 SHEET 1 H 7 GLN F 30 ARG F 35 0 SHEET 2 H 7 GLU F 39 LEU F 46 -1 O GLU F 39 N ARG F 35 SHEET 3 H 7 TRP F 51 THR F 54 -1 O LEU F 53 N SER F 45 SHEET 4 H 7 ALA F 104 LEU F 108 -1 O MET F 106 N VAL F 52 SHEET 5 H 7 LYS F 81 ILE F 90 -1 N GLU F 86 O LYS F 107 SHEET 6 H 7 LEU F 64 ILE F 68 -1 N ILE F 68 O LYS F 81 SHEET 7 H 7 GLN F 30 ARG F 35 -1 N PHE F 34 O LEU F 65 SHEET 1 I 2 LEU F 60 TYR F 60A 0 SHEET 2 I 2 LYS F 60F ASN F 60G-1 O LYS F 60F N TYR F 60A SHEET 1 J 7 SER H 20 ASP H 21 0 SHEET 2 J 7 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 SHEET 3 J 7 LYS H 135 GLY H 140 -1 N GLY H 136 O LEU H 160 SHEET 4 J 7 PRO H 198 LYS H 202 -1 O VAL H 200 N ARG H 137 SHEET 5 J 7 TRP H 207 TRP H 215 -1 O TYR H 208 N MET H 201 SHEET 6 J 7 GLY H 226 HIS H 230 -1 O PHE H 227 N TRP H 215 SHEET 7 J 7 MET H 180 ALA H 183 -1 N PHE H 181 O TYR H 228 SHEET 1 K 7 GLN H 30 ARG H 35 0 SHEET 2 K 7 GLU H 39 LEU H 46 -1 O GLU H 39 N ARG H 35 SHEET 3 K 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 SHEET 4 K 7 ALA H 104 LEU H 108 -1 O MET H 106 N VAL H 52 SHEET 5 K 7 LYS H 81 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 6 K 7 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 SHEET 7 K 7 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 SHEET 1 L 2 LEU H 60 TYR H 60A 0 SHEET 2 L 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.04 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.04 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.03 SSBOND 5 CYS C 1 CYS D 122 1555 1555 2.04 SSBOND 6 CYS D 42 CYS D 58 1555 1555 2.04 SSBOND 7 CYS D 168 CYS D 182 1555 1555 2.03 SSBOND 8 CYS D 191 CYS D 220 1555 1555 2.03 SSBOND 9 CYS E 1 CYS F 122 1555 1555 2.04 SSBOND 10 CYS F 42 CYS F 58 1555 1555 2.04 SSBOND 11 CYS F 168 CYS F 182 1555 1555 2.03 SSBOND 12 CYS F 191 CYS F 220 1555 1555 2.03 SSBOND 13 CYS G 1 CYS H 122 1555 1555 2.04 SSBOND 14 CYS H 42 CYS H 58 1555 1555 2.04 SSBOND 15 CYS H 168 CYS H 182 1555 1555 2.03 SSBOND 16 CYS H 191 CYS H 220 1555 1555 2.03 LINK C3 0G6 B 1 NE2 HIS B 57 1555 1555 1.51 LINK C2 0G6 B 1 OG SER B 195 1555 1555 1.43 LINK ND2 ASN B 60G C1 NAG J 1 1555 1555 1.45 LINK C3 0G6 D 1 NE2 HIS D 57 1555 1555 1.52 LINK C2 0G6 D 1 OG SER D 195 1555 1555 1.43 LINK ND2 ASN D 60G C1 NAG L 1 1555 1555 1.45 LINK C3 0G6 F 1 NE2 HIS F 57 1555 1555 1.51 LINK C2 0G6 F 1 OG SER F 195 1555 1555 1.43 LINK ND2 ASN F 60G C1 NAG M 1 1555 1555 1.46 LINK C3 0G6 H 1 NE2 HIS H 57 1555 1555 1.51 LINK C2 0G6 H 1 OG SER H 195 1555 1555 1.43 LINK ND2 ASN H 60G C1 NAG N 1 1555 1555 1.45 LINK O4 IDS I 1 C1 SGN I 2 1555 1555 1.43 LINK O4 SGN I 2 C1 IDS I 3 1555 1555 1.41 LINK O4 IDS I 3 C1 SGN I 4 1555 1555 1.42 LINK O4 SGN I 4 C1 IDS I 5 1555 1555 1.40 LINK O4 IDS I 5 C1 SGN I 6 1555 1555 1.42 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.39 LINK O4 SGN K 1 C1 IDS K 2 1555 1555 1.41 LINK O4 IDS K 2 C1 SGN K 3 1555 1555 1.41 LINK O4 SGN K 3 C1 IDS K 4 1555 1555 1.40 LINK O4 IDS K 4 C1 SGN K 5 1555 1555 1.41 LINK O4 NAG L 1 C1 NDG L 2 1555 1555 1.39 LINK O4 NAG M 1 C1 NDG M 2 1555 1555 1.39 LINK O4 NAG N 1 C1 NAG N 2 1555 1555 1.38 LINK O4 NAG N 2 C1 BMA N 3 1555 1555 1.39 LINK O3 BMA N 3 C1 MAN N 4 1555 1555 1.41 LINK O6 BMA N 3 C1 MAN N 5 1555 1555 1.40 LINK O ARG B 221A NA NA B3004 1555 1555 2.49 LINK O LYS B 224 NA NA B3004 1555 1555 2.55 LINK NA NA B3004 O HOH B3043 1555 1555 2.55 LINK NA NA B3004 O HOH B3046 1555 1555 2.53 LINK NA NA B3004 O HOH B3047 1555 1555 2.77 LINK NA NA B3004 O HOH B3075 1555 1555 2.65 LINK O ARG D 221A NA NA D3001 1555 1555 2.51 LINK O LYS D 224 NA NA D3001 1555 1555 2.56 LINK NA NA D3001 O HOH D3041 1555 1555 2.77 LINK NA NA D3001 O HOH D3042 1555 1555 2.54 LINK NA NA D3001 O HOH D3043 1555 1555 2.64 LINK NA NA D3001 O HOH D3047 1555 1555 2.66 LINK O ARG F 221A NA NA F3002 1555 1555 2.63 LINK O LYS F 224 NA NA F3002 1555 1555 2.68 LINK NA NA F3002 O HOH F3018 1555 1555 2.83 LINK NA NA F3002 O HOH F3027 1555 1555 2.79 LINK NA NA F3002 O HOH F3040 1555 1555 2.60 LINK NA NA F3002 O HOH F3046 1555 1555 2.73 LINK O ARG H 221A NA NA H3003 1555 1555 2.59 LINK O LYS H 224 NA NA H3003 1555 1555 2.62 LINK NA NA H3003 O HOH H3027 1555 1555 2.70 LINK NA NA H3003 O HOH H3028 1555 1555 2.81 LINK NA NA H3003 O HOH H3055 1555 1555 2.72 LINK NA NA H3003 O HOH H3060 1555 1555 2.70 CISPEP 1 SER B 36A PRO B 37 0 -0.29 CISPEP 2 SER D 36A PRO D 37 0 -0.39 CISPEP 3 SER F 36A PRO F 37 0 -0.37 CISPEP 4 SER H 36A PRO H 37 0 -0.31 CRYST1 80.907 80.841 114.144 90.00 101.05 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012360 0.000000 0.002414 0.00000 SCALE2 0.000000 0.012370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008926 0.00000