PDB Short entry for 1XNS HEADER HYDROLASE, LIGASE/DNA 05-OCT-04 1XNS TITLE PEPTIDE TRAPPED HOLLIDAY JUNCTION INTERMEDIATE IN CRE-LOXP TITLE 2 RECOMBINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOXP DNA; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PART OF HOLLIDAY JUNCTION; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LOXP DNA; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: PART OF HOLLIDAY JUNCTION; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RECOMBINASE CRE; COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 7 ORGANISM_TAXID: 10678; SOURCE 8 GENE: CRE; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CRE RECOMBINASE, HOLLIDAY JUNCTION, RECOMBINATION, COMPLEX KEYWDS 2 (RECOMBINASE-DNA), PEPTIDE INHIBITOR, HYDROLASE, LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,C.K.LAU,F.GUO,A.M.SEGALL,G.D.VAN DUYNE REVDAT 5 23-AUG-23 1XNS 1 REMARK REVDAT 4 24-FEB-09 1XNS 1 VERSN REVDAT 3 21-JUN-05 1XNS 1 JRNL REVDAT 2 22-MAR-05 1XNS 1 REMARK REVDAT 1 14-DEC-04 1XNS 0 JRNL AUTH K.GHOSH,C.K.LAU,F.GUO,A.M.SEGALL,G.D.VAN DUYNE JRNL TITL PEPTIDE TRAPPING OF THE HOLLIDAY JUNCTION INTERMEDIATE IN JRNL TITL 2 CRE-LOXP SITE-SPECIFIC RECOMBINATION. JRNL REF J.BIOL.CHEM. V. 280 8290 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15591069 JRNL DOI 10.1074/JBC.M411668200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 26172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1386 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5100 REMARK 3 NUCLEIC ACID ATOMS : 1411 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.273 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6761 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5541 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9418 ; 1.713 ; 2.214 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12889 ; 1.964 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 6.681 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 979 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6520 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1164 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1703 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6867 ; 0.253 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3658 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 259 ; 0.214 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 296 ; 0.368 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 82 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3190 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5104 ; 1.410 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3571 ; 2.081 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4314 ; 3.796 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19700 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1CRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM ACETATE BUFFER PH 5.0, 25% MPD, REMARK 280 20 MM CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.89950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.89950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.03900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.76450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.03900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.76450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.89950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.03900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.76450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.89950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.03900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.76450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 342 REMARK 465 ASP A 343 REMARK 465 GLY B 342 REMARK 465 ASP B 343 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DT C 18 C7 REMARK 480 DT D 18 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 413 O HOH B 418 1.90 REMARK 500 O6 DG C 17 O HOH C 53 2.04 REMARK 500 O4 DT D 32 O HOH D 43 2.11 REMARK 500 O HOH D 36 O HOH B 389 2.16 REMARK 500 OP1 DC C 22 O HOH C 42 2.16 REMARK 500 O PHE B 64 N ALA B 66 2.17 REMARK 500 O HOH C 47 O HOH C 55 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 39 O HOH B 365 4555 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 7 O3' DT C 7 C3' -0.060 REMARK 500 DG C 10 O3' DG C 10 C3' -0.038 REMARK 500 DT C 18 C5 DT C 18 C7 0.192 REMARK 500 DT C 18 O3' DA C 19 P 0.075 REMARK 500 DA C 19 C1' DA C 19 N9 -0.110 REMARK 500 DT C 23 O3' DT C 23 C3' -0.084 REMARK 500 DG D 10 O3' DG D 10 C3' -0.082 REMARK 500 DA D 14 O3' DA D 14 C3' -0.045 REMARK 500 DT D 18 C5 DT D 18 C7 -0.170 REMARK 500 DT D 22 O3' DT D 22 C3' -0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT C 3 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = -7.5 DEGREES REMARK 500 DA C 5 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 7.6 DEGREES REMARK 500 DC C 6 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC C 6 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC C 6 N3 - C4 - N4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT C 7 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 7 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT C 8 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 10 N3 - C4 - C5 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT C 13 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DA C 15 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 17 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 17 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 DT C 18 C4 - C5 - C7 ANGL. DEV. = 17.1 DEGREES REMARK 500 DT C 18 C6 - C5 - C7 ANGL. DEV. = -18.1 DEGREES REMARK 500 DA C 19 O4' - C1' - N9 ANGL. DEV. = 19.8 DEGREES REMARK 500 DA C 19 C8 - N9 - C1' ANGL. DEV. = -13.1 DEGREES REMARK 500 DT C 20 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DT C 20 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 21 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT C 23 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 23 N3 - C4 - O4 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG C 28 O4' - C1' - N9 ANGL. DEV. = -6.5 DEGREES REMARK 500 DA C 29 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT C 32 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT C 33 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 35 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT D 3 N3 - C2 - O2 ANGL. DEV. = -3.6 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC D 6 C1' - O4' - C4' ANGL. DEV. = 4.4 DEGREES REMARK 500 DT D 7 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 8 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT D 8 N1 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 DT D 8 O4' - C1' - N1 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT D 8 N3 - C4 - O4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT D 8 C5 - C4 - O4 ANGL. DEV. = -4.6 DEGREES REMARK 500 DC D 9 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC D 9 N1 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 DG D 10 O5' - C5' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT D 11 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 13 O4' - C1' - N1 ANGL. DEV. = 8.6 DEGREES REMARK 500 DG D 15 N9 - C1' - C2' ANGL. DEV. = 9.0 DEGREES REMARK 500 DG D 15 O4' - C1' - N9 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC D 16 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 36.60 -98.24 REMARK 500 GLN A 35 2.94 -65.35 REMARK 500 GLU A 138 -168.60 -111.17 REMARK 500 MET A 149 30.14 -149.53 REMARK 500 LEU A 171 29.84 43.24 REMARK 500 ARG A 173 172.41 -58.31 REMARK 500 SER A 186 -151.80 -100.06 REMARK 500 ARG A 192 114.85 -19.07 REMARK 500 SER A 205 161.46 178.34 REMARK 500 ALA A 207 38.37 -87.30 REMARK 500 VAL A 209 -167.86 -115.22 REMARK 500 GLU A 222 -65.53 -94.74 REMARK 500 ASP A 232 -9.62 -45.78 REMARK 500 ALA A 252 -12.24 -140.03 REMARK 500 ALA A 275 150.37 -33.46 REMARK 500 GLN A 281 178.31 -57.87 REMARK 500 ASN A 317 61.67 168.56 REMARK 500 VAL A 318 -17.36 -49.63 REMARK 500 ASN B 60 69.80 39.42 REMARK 500 PHE B 64 -113.45 -77.24 REMARK 500 ALA B 127 16.27 -140.83 REMARK 500 SER B 186 -153.76 -131.22 REMARK 500 ASP B 232 -82.15 -49.10 REMARK 500 ASP B 277 178.16 -54.68 REMARK 500 TYR B 283 31.38 82.09 REMARK 500 ARG B 326 -72.48 -24.12 REMARK 500 ASP B 329 91.28 -45.77 REMARK 500 SER B 330 -139.34 -125.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 19 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CRX RELATED DB: PDB REMARK 900 SYNTHETIC HJ WITH AN INACTIVE MUTANT REMARK 900 RELATED ID: 1XO0 RELATED DB: PDB DBREF 1XNS A 20 343 UNP P06956 RECR_BPP1 20 343 DBREF 1XNS B 20 343 UNP P06956 RECR_BPP1 20 343 DBREF 1XNS C 1 35 PDB 1XNS 1XNS 1 35 DBREF 1XNS D 2 35 PDB 1XNS 1XNS 2 35 SEQRES 1 C 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 C 35 DA DA DT DG DT DA DT DG DC DT DA DT DA SEQRES 3 C 35 DC DG DA DA DG DT DT DA DT SEQRES 1 D 34 DA DT DA DA DC DT DT DC DG DT DA DT DA SEQRES 2 D 34 DG DC DA DT DA DC DA DT DT DA DT DA DC SEQRES 3 D 34 DG DA DA DG DT DT DA DT SEQRES 1 A 324 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 A 324 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 A 324 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 A 324 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 A 324 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 A 324 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 A 324 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 A 324 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 A 324 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 A 324 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 A 324 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 A 324 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU ARG ILE ALA SEQRES 13 A 324 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 A 324 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 A 324 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 A 324 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 A 324 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 A 324 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 A 324 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 A 324 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 A 324 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 A 324 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 A 324 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 A 324 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 A 324 THR GLY ALA MET VAL ARG LEU LEU GLU ASP GLY ASP SEQRES 1 B 324 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 B 324 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 B 324 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 B 324 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 B 324 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 B 324 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 B 324 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 B 324 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 B 324 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 B 324 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 B 324 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 B 324 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU ARG ILE ALA SEQRES 13 B 324 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 B 324 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 B 324 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 B 324 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 B 324 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 B 324 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 B 324 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 B 324 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 B 324 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 B 324 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 B 324 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 B 324 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 B 324 THR GLY ALA MET VAL ARG LEU LEU GLU ASP GLY ASP FORMUL 5 HOH *296(H2 O) HELIX 1 1 SER A 20 ASP A 33 1 14 HELIX 2 2 ARG A 34 PHE A 37 5 4 HELIX 3 3 SER A 38 LEU A 58 1 21 HELIX 4 4 GLU A 67 ARG A 81 1 15 HELIX 5 5 ALA A 84 ARG A 101 1 18 HELIX 6 6 ARG A 106 ASP A 109 5 4 HELIX 7 7 SER A 110 ALA A 127 1 18 HELIX 8 8 GLU A 138 GLU A 150 1 13 HELIX 9 9 ARG A 154 LEU A 171 1 18 HELIX 10 10 ARG A 173 ILE A 180 1 8 HELIX 11 11 ARG A 181 LYS A 183 5 3 HELIX 12 12 THR A 188 ARG A 192 5 5 HELIX 13 13 SER A 214 GLY A 229 1 16 HELIX 14 14 SER A 257 GLY A 274 1 18 HELIX 15 15 HIS A 289 ALA A 302 1 14 HELIX 16 16 SER A 305 GLY A 313 1 9 HELIX 17 17 VAL A 318 ILE A 325 1 8 HELIX 18 18 LEU A 328 THR A 332 5 5 HELIX 19 19 GLY A 333 GLU A 340 1 8 HELIX 20 20 SER B 20 ASP B 33 1 14 HELIX 21 21 ARG B 34 PHE B 37 5 4 HELIX 22 22 SER B 38 ASN B 59 1 22 HELIX 23 23 GLU B 67 ARG B 81 1 15 HELIX 24 24 ALA B 84 GLY B 103 1 20 HELIX 25 25 ARG B 106 ASP B 109 5 4 HELIX 26 26 SER B 110 ASP B 126 1 17 HELIX 27 27 GLU B 138 GLU B 150 1 13 HELIX 28 28 ARG B 154 LEU B 171 1 18 HELIX 29 29 ARG B 173 ARG B 179 1 7 HELIX 30 30 ARG B 181 LYS B 183 5 3 HELIX 31 31 SER B 214 GLY B 229 1 16 HELIX 32 32 SER B 257 GLY B 274 1 18 HELIX 33 33 HIS B 289 ALA B 302 1 14 HELIX 34 34 SER B 305 GLY B 313 1 9 HELIX 35 35 VAL B 318 ASN B 323 1 6 HELIX 36 36 GLY B 333 GLU B 340 1 8 SHEET 1 A 2 ILE A 185 SER A 186 0 SHEET 2 A 2 LEU A 194 ILE A 195 -1 O LEU A 194 N SER A 186 SHEET 1 B 3 ILE B 185 ARG B 187 0 SHEET 2 B 3 MET B 193 ARG B 199 -1 O LEU B 194 N SER B 186 SHEET 3 B 3 VAL B 204 ALA B 212 -1 O VAL B 209 N ILE B 197 SHEET 1 C 2 ARG B 241 VAL B 242 0 SHEET 2 C 2 ALA B 248 ALA B 249 -1 O ALA B 249 N ARG B 241 CISPEP 1 PHE A 64 PRO A 65 0 -11.65 CRYST1 106.078 121.529 177.799 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005624 0.00000