PDB Short entry for 1XO0 HEADER HYDROLASE, LIGASE/DNA 05-OCT-04 1XO0 TITLE HIGH RESOLUTION STRUCTURE OF THE HOLLIDAY JUNCTION INTERMEDIATE IN TITLE 2 CRE-LOXP SITE-SPECIFIC RECOMBINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOXP; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PART OF HOLLIDAY JUNCTION; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LOXP; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: PART OF HOLLIDAY JUNCTION; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RECOMBINASE CRE; COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 7 ORGANISM_TAXID: 10678; SOURCE 8 GENE: CRE; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CRE RECOMBINASE, HOLLIDAY JUNCTION, RECOMBINATION, COMPLEX KEYWDS 2 (RECOMBINASE-DNA), HYDROLASE, LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.GHOSH,C.K.LAU,F.GUO,A.M.SEGALL,G.D.VAN DUYNE REVDAT 5 23-AUG-23 1XO0 1 REMARK REVDAT 4 20-OCT-21 1XO0 1 SEQADV REVDAT 3 24-FEB-09 1XO0 1 VERSN REVDAT 2 21-JUN-05 1XO0 1 JRNL REVDAT 1 14-DEC-04 1XO0 0 JRNL AUTH K.GHOSH,C.K.LAU,F.GUO,A.M.SEGALL,G.D.VAN DUYNE JRNL TITL PEPTIDE TRAPPING OF THE HOLLIDAY JUNCTION INTERMEDIATE IN JRNL TITL 2 CRE-LOXP SITE-SPECIFIC RECOMBINATION. JRNL REF J.BIOL.CHEM. V. 280 8290 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15591069 JRNL DOI 10.1074/JBC.M411668200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 58491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5096 REMARK 3 NUCLEIC ACID ATOMS : 1428 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE FOLLOWING BOND DISTANCES ARE SLIGHTLY LONG: REMARK 3 PEPTIDE BOND BETWEEN CHAIN B RESIDUES THR 202 AND B LEU 203. REMARK 3 PHOSPHO DIESTER BRIDGE BETWEEN CHAIN C NUCLEOTIDES T 1 AND A 2. REMARK 3 PHOSPHO DIESTER BRIDGE BETWEEN CHAIN D NUCLEOTIDES T 1 AND A 2. REMARK 4 REMARK 4 1XO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9188 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1CRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM ACETATE BUFFER PH 5.0 40%MPD 20MM REMARK 280 CACL2. , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.70000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.70000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.10000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.70000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.70000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 300 MOLECULE IS A TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 123.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 180.20000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 342 REMARK 465 ASP A 343 REMARK 465 GLY B 342 REMARK 465 ASP B 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 199 CG2 THR B 200 1.17 REMARK 500 O GLY B 198 N ARG B 199 1.47 REMARK 500 CG ARG B 199 N THR B 200 1.51 REMARK 500 N LYS B 201 N THR B 202 1.55 REMARK 500 C LYS B 201 CA THR B 202 1.58 REMARK 500 CA LYS B 201 N THR B 202 1.66 REMARK 500 O GLY B 198 CA ARG B 199 1.76 REMARK 500 C THR B 200 N THR B 202 1.78 REMARK 500 OG1 THR B 202 N LEU B 203 1.78 REMARK 500 O THR B 200 N THR B 202 2.05 REMARK 500 O HOH B 370 O HOH B 513 2.17 REMARK 500 OG1 THR B 200 N LEU B 203 2.18 REMARK 500 ND2 ASN A 317 O HOH A 409 2.18 REMARK 500 CA ARG B 199 O LEU B 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 126 NH2 ARG B 199 4566 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 3 C5 DT C 3 C7 0.044 REMARK 500 DT C 3 O3' DA C 4 P -0.083 REMARK 500 DT C 11 C5 DT C 11 C7 0.043 REMARK 500 DT C 13 C5 DT C 13 C7 0.044 REMARK 500 DA C 14 O3' DA C 15 P -0.085 REMARK 500 DT C 25 C5 DT C 25 C7 0.043 REMARK 500 DT C 25 O3' DA C 26 P -0.075 REMARK 500 DT C 32 C5 DT C 32 C7 0.044 REMARK 500 DT C 33 C5 DT C 33 C7 0.044 REMARK 500 DT C 35 C5 DT C 35 C7 0.043 REMARK 500 DT D 3 C5 DT D 3 C7 0.043 REMARK 500 DT D 11 C5 DT D 11 C7 0.045 REMARK 500 DT D 13 C5 DT D 13 C7 0.044 REMARK 500 DT D 13 O3' DA D 14 P -0.139 REMARK 500 DT D 18 C5 DT D 18 C7 0.043 REMARK 500 DT D 23 C5 DT D 23 C7 0.044 REMARK 500 DT D 25 C5 DT D 25 C7 0.044 REMARK 500 DA D 26 O3' DC D 27 P -0.102 REMARK 500 DT D 32 C5 DT D 32 C7 0.044 REMARK 500 DT D 33 C5 DT D 33 C7 0.045 REMARK 500 GLY B 198 C ARG B 199 N -0.389 REMARK 500 ARG B 199 CG ARG B 199 CD -0.386 REMARK 500 ARG B 199 CD ARG B 199 NE -0.438 REMARK 500 SER B 205 C THR B 206 N -0.282 REMARK 500 THR B 206 C ALA B 207 N -0.393 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 3 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG C 10 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA C 24 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 25 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DT D 13 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DT D 18 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DA D 24 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA D 34 C3' - O3' - P ANGL. DEV. = -10.1 DEGREES REMARK 500 GLY B 198 CA - C - N ANGL. DEV. = 29.3 DEGREES REMARK 500 GLY B 198 O - C - N ANGL. DEV. = -39.6 DEGREES REMARK 500 ARG B 199 CA - CB - CG ANGL. DEV. = -33.3 DEGREES REMARK 500 ARG B 199 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 LYS B 201 CA - C - N ANGL. DEV. = -47.0 DEGREES REMARK 500 THR B 202 C - N - CA ANGL. DEV. = -53.8 DEGREES REMARK 500 VAL B 204 CA - C - N ANGL. DEV. = 18.1 DEGREES REMARK 500 VAL B 204 O - C - N ANGL. DEV. = -18.6 DEGREES REMARK 500 ARG B 326 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 35 0.71 -68.21 REMARK 500 ASP A 189 147.18 -179.93 REMARK 500 ASP A 232 3.59 -66.00 REMARK 500 ASP A 233 110.97 -168.35 REMARK 500 PRO A 250 152.91 -48.63 REMARK 500 ALA A 275 150.10 -37.55 REMARK 500 LYS A 276 -178.93 -59.87 REMARK 500 ASP A 278 27.72 39.87 REMARK 500 GLN A 281 172.74 -43.44 REMARK 500 ASP B 33 54.26 -99.12 REMARK 500 GLN B 35 -0.95 -57.85 REMARK 500 SER B 186 -164.47 -119.11 REMARK 500 ARG B 199 -135.95 -149.60 REMARK 500 THR B 200 -166.45 139.43 REMARK 500 LYS B 201 -2.79 -45.89 REMARK 500 THR B 206 -73.94 -53.42 REMARK 500 ALA B 207 -71.16 -71.13 REMARK 500 ASP B 277 -151.43 -64.69 REMARK 500 ASP B 278 -6.51 -141.32 REMARK 500 GLU B 340 32.58 -78.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 199 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY B 198 -32.74 REMARK 500 LYS B 201 -21.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XNS RELATED DB: PDB REMARK 900 RELATED ID: 2CRX RELATED DB: PDB REMARK 900 RELATED ID: 3CRX RELATED DB: PDB DBREF 1XO0 A 20 343 UNP P06956 RECR_BPP1 20 343 DBREF 1XO0 B 20 343 UNP P06956 RECR_BPP1 20 343 DBREF 1XO0 C 1 35 PDB 1XO0 1XO0 1 35 DBREF 1XO0 D 1 35 PDB 1XO0 1XO0 1 35 SEQADV 1XO0 LYS A 173 UNP P06956 ARG 173 ENGINEERED MUTATION SEQADV 1XO0 LYS B 173 UNP P06956 ARG 173 ENGINEERED MUTATION SEQRES 1 C 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 C 35 DA DA DT DG DT DA DT DG DC DT DA DT DA SEQRES 3 C 35 DC DG DA DA DG DT DT DA DT SEQRES 1 D 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 D 35 DA DG DC DA DT DA DC DA DT DT DA DT DA SEQRES 3 D 35 DC DG DA DA DG DT DT DA DT SEQRES 1 A 324 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 A 324 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 A 324 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 A 324 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 A 324 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 A 324 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 A 324 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 A 324 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 A 324 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 A 324 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 A 324 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 A 324 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU LYS ILE ALA SEQRES 13 A 324 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 A 324 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 A 324 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 A 324 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 A 324 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 A 324 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 A 324 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 A 324 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 A 324 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 A 324 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 A 324 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 A 324 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 A 324 THR GLY ALA MET VAL ARG LEU LEU GLU ASP GLY ASP SEQRES 1 B 324 SER ASP GLU VAL ARG LYS ASN LEU MET ASP MET PHE ARG SEQRES 2 B 324 ASP ARG GLN ALA PHE SER GLU HIS THR TRP LYS MET LEU SEQRES 3 B 324 LEU SER VAL CYS ARG SER TRP ALA ALA TRP CYS LYS LEU SEQRES 4 B 324 ASN ASN ARG LYS TRP PHE PRO ALA GLU PRO GLU ASP VAL SEQRES 5 B 324 ARG ASP TYR LEU LEU TYR LEU GLN ALA ARG GLY LEU ALA SEQRES 6 B 324 VAL LYS THR ILE GLN GLN HIS LEU GLY GLN LEU ASN MET SEQRES 7 B 324 LEU HIS ARG ARG SER GLY LEU PRO ARG PRO SER ASP SER SEQRES 8 B 324 ASN ALA VAL SER LEU VAL MET ARG ARG ILE ARG LYS GLU SEQRES 9 B 324 ASN VAL ASP ALA GLY GLU ARG ALA LYS GLN ALA LEU ALA SEQRES 10 B 324 PHE GLU ARG THR ASP PHE ASP GLN VAL ARG SER LEU MET SEQRES 11 B 324 GLU ASN SER ASP ARG CYS GLN ASP ILE ARG ASN LEU ALA SEQRES 12 B 324 PHE LEU GLY ILE ALA TYR ASN THR LEU LEU LYS ILE ALA SEQRES 13 B 324 GLU ILE ALA ARG ILE ARG VAL LYS ASP ILE SER ARG THR SEQRES 14 B 324 ASP GLY GLY ARG MET LEU ILE HIS ILE GLY ARG THR LYS SEQRES 15 B 324 THR LEU VAL SER THR ALA GLY VAL GLU LYS ALA LEU SER SEQRES 16 B 324 LEU GLY VAL THR LYS LEU VAL GLU ARG TRP ILE SER VAL SEQRES 17 B 324 SER GLY VAL ALA ASP ASP PRO ASN ASN TYR LEU PHE CYS SEQRES 18 B 324 ARG VAL ARG LYS ASN GLY VAL ALA ALA PRO SER ALA THR SEQRES 19 B 324 SER GLN LEU SER THR ARG ALA LEU GLU GLY ILE PHE GLU SEQRES 20 B 324 ALA THR HIS ARG LEU ILE TYR GLY ALA LYS ASP ASP SER SEQRES 21 B 324 GLY GLN ARG TYR LEU ALA TRP SER GLY HIS SER ALA ARG SEQRES 22 B 324 VAL GLY ALA ALA ARG ASP MET ALA ARG ALA GLY VAL SER SEQRES 23 B 324 ILE PRO GLU ILE MET GLN ALA GLY GLY TRP THR ASN VAL SEQRES 24 B 324 ASN ILE VAL MET ASN TYR ILE ARG ASN LEU ASP SER GLU SEQRES 25 B 324 THR GLY ALA MET VAL ARG LEU LEU GLU ASP GLY ASP FORMUL 5 HOH *493(H2 O) HELIX 1 1 SER A 20 ASP A 33 1 14 HELIX 2 2 ARG A 34 PHE A 37 5 4 HELIX 3 3 SER A 38 ASN A 60 1 23 HELIX 4 4 GLU A 67 ARG A 81 1 15 HELIX 5 5 ALA A 84 GLY A 103 1 20 HELIX 6 6 ARG A 106 ASP A 109 5 4 HELIX 7 7 SER A 110 ALA A 127 1 18 HELIX 8 8 GLU A 138 GLU A 150 1 13 HELIX 9 9 ARG A 154 LEU A 171 1 18 HELIX 10 10 LYS A 173 ILE A 180 1 8 HELIX 11 11 ARG A 181 LYS A 183 5 3 HELIX 12 12 SER A 214 GLY A 229 1 16 HELIX 13 13 VAL A 230 ASP A 233 5 4 HELIX 14 14 SER A 257 GLY A 274 1 18 HELIX 15 15 HIS A 289 ALA A 302 1 14 HELIX 16 16 SER A 305 GLY A 314 1 10 HELIX 17 17 ILE A 320 ILE A 325 1 6 HELIX 18 18 LEU A 328 THR A 332 5 5 HELIX 19 19 GLY A 333 GLU A 340 1 8 HELIX 20 20 ASP B 21 ASP B 33 1 13 HELIX 21 21 ARG B 34 PHE B 37 5 4 HELIX 22 22 SER B 38 ASN B 59 1 22 HELIX 23 23 GLU B 67 ARG B 81 1 15 HELIX 24 24 ALA B 84 ARG B 101 1 18 HELIX 25 25 ARG B 106 ASP B 109 5 4 HELIX 26 26 SER B 110 ALA B 127 1 18 HELIX 27 27 GLU B 138 GLU B 150 1 13 HELIX 28 28 ARG B 154 LEU B 171 1 18 HELIX 29 29 LYS B 173 ILE B 180 1 8 HELIX 30 30 ARG B 181 LYS B 183 5 3 HELIX 31 31 SER B 214 GLY B 229 1 16 HELIX 32 32 VAL B 230 ASP B 233 5 4 HELIX 33 33 SER B 257 GLY B 274 1 18 HELIX 34 34 HIS B 289 ARG B 301 1 13 HELIX 35 35 SER B 305 GLY B 314 1 10 HELIX 36 36 ASN B 317 ILE B 325 1 9 HELIX 37 37 ARG B 326 LEU B 328 5 3 HELIX 38 38 ALA B 334 LEU B 339 1 6 SHEET 1 A 3 ILE A 185 ASP A 189 0 SHEET 2 A 3 ARG A 192 ILE A 197 -1 O ARG A 192 N ASP A 189 SHEET 3 A 3 VAL A 209 LEU A 213 -1 O LYS A 211 N ILE A 195 SHEET 1 B 2 ARG A 241 VAL A 242 0 SHEET 2 B 2 ALA A 248 ALA A 249 -1 O ALA A 249 N ARG A 241 SHEET 1 C 3 ILE B 185 ARG B 187 0 SHEET 2 C 3 MET B 193 ILE B 197 -1 O LEU B 194 N SER B 186 SHEET 3 C 3 VAL B 209 ALA B 212 -1 O LYS B 211 N ILE B 195 CISPEP 1 PHE A 64 PRO A 65 0 -0.80 CISPEP 2 PHE B 64 PRO B 65 0 -0.42 CRYST1 107.400 123.000 180.200 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009311 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005549 0.00000