PDB Short entry for 1XO3 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-OCT-04 1XO3 TITLE SOLUTION STRUCTURE OF UBIQUITIN LIKE PROTEIN FROM MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIKEN CDNA 2900073H19; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UBIQUITIN-LIKE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, CENTER FOR KEYWDS 2 EUKARYOTIC STRUCTURAL GENOMICS, PSI, CESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SINGH,M.TONELLI,R.C.TYLER,A.BAHRAMI,M.S.LEE,J.L.MARKLEY,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 02-MAR-22 1XO3 1 REMARK SEQADV REVDAT 5 24-FEB-09 1XO3 1 VERSN REVDAT 4 12-FEB-08 1XO3 1 REMARK REVDAT 3 31-JAN-06 1XO3 1 AUTHOR JRNL REVDAT 2 01-FEB-05 1XO3 1 AUTHOR KEYWDS REMARK REVDAT 1 19-OCT-04 1XO3 0 JRNL AUTH S.SINGH,M.TONELLI,R.C.TYLER,A.BAHRAMI,M.S.LEE,J.L.MARKLEY JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE AAH26994.1 PROTEIN FROM JRNL TITL 2 MUS MUSCULUS, A PUTATIVE EUKARYOTIC URM1. JRNL REF PROTEIN SCI. V. 14 2095 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 16046629 JRNL DOI 10.1110/PS.051577605 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, CNS 1.1 REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), AXEL BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 2166 NOE DERIVED CONSTRAINTS, 46 H-BOND REMARK 3 CONSTRAINTS, 96 DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 1XO3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030567. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5MM BIS-TRIS, 50MM NACL, 93% REMARK 210 H2O, 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, NMRVIEW 5.1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE, REMARK 210 CARTESIAN COORDINATE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA ASN A 72 H SER A 91 1.21 REMARK 500 H GLN A 87 OD2 ASP A 90 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 -73.96 -70.33 REMARK 500 1 ASP A 20 -16.86 82.32 REMARK 500 1 LYS A 23 -61.04 -98.64 REMARK 500 1 GLN A 32 -75.81 -158.21 REMARK 500 1 GLU A 34 82.29 54.49 REMARK 500 1 TRP A 36 35.79 -94.88 REMARK 500 1 ASP A 61 -38.11 -163.87 REMARK 500 1 SER A 62 -79.37 -154.11 REMARK 500 1 ASN A 72 -47.59 67.05 REMARK 500 1 ASP A 73 24.13 175.46 REMARK 500 1 GLU A 81 -116.94 40.15 REMARK 500 1 LEU A 86 151.81 61.45 REMARK 500 2 ASP A 20 64.76 65.95 REMARK 500 2 LYS A 23 -67.81 -121.10 REMARK 500 2 GLN A 32 116.95 -161.43 REMARK 500 2 GLU A 33 -39.89 68.37 REMARK 500 2 GLU A 34 87.87 61.05 REMARK 500 2 GLU A 52 -158.25 -96.05 REMARK 500 2 ASP A 61 -68.08 -144.36 REMARK 500 2 SER A 62 -67.61 -138.12 REMARK 500 2 ASN A 72 -48.44 68.19 REMARK 500 2 ASP A 73 36.03 178.22 REMARK 500 2 GLU A 81 -128.06 41.21 REMARK 500 2 ASP A 83 73.05 -100.77 REMARK 500 2 LEU A 86 151.63 65.10 REMARK 500 3 PRO A 4 -78.79 -53.38 REMARK 500 3 LYS A 23 -82.20 -117.98 REMARK 500 3 GLN A 32 -85.55 -125.46 REMARK 500 3 GLU A 34 94.51 -32.48 REMARK 500 3 ASP A 61 -63.98 -142.68 REMARK 500 3 SER A 62 -68.67 -140.13 REMARK 500 3 ASN A 72 -59.14 77.08 REMARK 500 3 ASP A 73 23.59 179.81 REMARK 500 3 GLU A 81 -148.32 61.68 REMARK 500 3 GLN A 85 20.45 -79.46 REMARK 500 3 LEU A 86 151.88 56.99 REMARK 500 3 GLN A 87 -74.94 -113.06 REMARK 500 3 ASP A 88 129.07 172.00 REMARK 500 4 PRO A 4 -76.55 -81.87 REMARK 500 4 LYS A 23 -73.77 -119.24 REMARK 500 4 TRP A 36 34.71 -96.37 REMARK 500 4 ASN A 48 -54.27 -121.27 REMARK 500 4 ASP A 61 -62.04 -146.97 REMARK 500 4 SER A 62 -72.06 -131.20 REMARK 500 4 ASN A 72 -63.38 76.82 REMARK 500 4 ASP A 73 24.24 -173.33 REMARK 500 4 GLU A 81 -127.06 41.77 REMARK 500 4 LEU A 86 145.52 60.01 REMARK 500 4 ASP A 88 127.29 174.97 REMARK 500 5 PRO A 4 -62.73 -91.29 REMARK 500 REMARK 500 THIS ENTRY HAS 261 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6337 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ENTRY REMARK 900 RELATED ID: GO.34198 RELATED DB: TARGETDB DBREF 1XO3 A 2 101 UNP Q9D2P4 Q9D2P4_MOUSE 2 101 SEQADV 1XO3 SER A 1 UNP Q9D2P4 CLONING ARTIFACT SEQRES 1 A 101 SER ALA ALA PRO LEU CYS VAL LYS VAL GLU PHE GLY GLY SEQRES 2 A 101 GLY ALA GLU LEU LEU PHE ASP GLY VAL LYS LYS HIS GLN SEQRES 3 A 101 VAL ALA LEU PRO GLY GLN GLU GLU PRO TRP ASP ILE ARG SEQRES 4 A 101 ASN LEU LEU VAL TRP ILE LYS LYS ASN LEU LEU LYS GLU SEQRES 5 A 101 ARG PRO GLU LEU PHE ILE GLN GLY ASP SER VAL ARG PRO SEQRES 6 A 101 GLY ILE LEU VAL LEU ILE ASN ASP ALA ASP TRP GLU LEU SEQRES 7 A 101 LEU GLY GLU LEU ASP TYR GLN LEU GLN ASP GLN ASP SER SEQRES 8 A 101 ILE LEU PHE ILE SER THR LEU HIS GLY GLY HELIX 1 1 GLY A 14 ASP A 20 5 7 HELIX 2 2 ASP A 37 LEU A 50 1 14 HELIX 3 3 ARG A 53 PHE A 57 5 5 HELIX 4 4 TRP A 76 GLY A 80 1 5 SHEET 1 A 5 HIS A 25 ALA A 28 0 SHEET 2 A 5 CYS A 6 PHE A 11 -1 N VAL A 9 O HIS A 25 SHEET 3 A 5 SER A 91 SER A 96 1 O ILE A 92 N LYS A 8 SHEET 4 A 5 ILE A 67 ILE A 71 -1 N LEU A 68 O ILE A 95 SHEET 5 A 5 ALA A 74 ASP A 75 -1 O ALA A 74 N ILE A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000