PDB Short entry for 1XO7 HEADER ISOMERASE 05-OCT-04 1XO7 TITLE CRYSTAL STRUCTURE OF CYCLOPHILIN FROM TRYPANOSOMA CRUZI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOPHILIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-STAR; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS CYCLOPHILIN, ROTAMASE, PROLINE, ISOMERASE, CIS-TRANS, TRYPANOSOMA, KEYWDS 2 CRUZI, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP EXPDTA X-RAY DIFFRACTION AUTHOR J.M.CARUTHERS,W.G.J.HOL,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 5 23-AUG-23 1XO7 1 REMARK REVDAT 4 13-JUL-11 1XO7 1 VERSN REVDAT 3 24-FEB-09 1XO7 1 VERSN REVDAT 2 16-MAY-06 1XO7 1 COMPND REVDAT 1 21-DEC-04 1XO7 0 JRNL AUTH J.M.CARUTHERS,W.G.J.HOL, JRNL AUTH 2 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM (SGPP) JRNL TITL CRYSTAL STRUCTURE OF CYCLOPHILIN FROM TRYPANOSOMA CRUZI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 80854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 808 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : 0.36000 REMARK 3 B23 (A**2) : 0.14000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.492 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5196 ; 0.038 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4648 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7008 ; 2.610 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10860 ; 3.668 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 660 ; 6.597 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 764 ; 0.189 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5864 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1064 ; 0.022 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 918 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5140 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2492 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 391 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 122 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.109 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3260 ; 1.637 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5264 ; 2.591 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1936 ; 4.471 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1744 ; 6.580 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 51.8408 27.5374 15.8955 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0520 REMARK 3 T33: 0.0275 T12: -0.0033 REMARK 3 T13: 0.0023 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2766 L22: 0.2030 REMARK 3 L33: 0.1143 L12: -0.1397 REMARK 3 L13: -0.1577 L23: 0.1185 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.0065 S13: -0.0205 REMARK 3 S21: -0.0218 S22: -0.0402 S23: -0.0108 REMARK 3 S31: -0.0162 S32: 0.0021 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4449 0.0458 51.7492 REMARK 3 T TENSOR REMARK 3 T11: 0.0186 T22: 0.0285 REMARK 3 T33: 0.0273 T12: -0.0010 REMARK 3 T13: 0.0026 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.4457 L22: 0.3047 REMARK 3 L33: 0.2287 L12: 0.0702 REMARK 3 L13: 0.0822 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0066 S13: -0.0371 REMARK 3 S21: -0.0232 S22: 0.0395 S23: 0.0085 REMARK 3 S31: -0.0237 S32: 0.0534 S33: -0.0256 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 166 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9769 20.6181 40.7790 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0223 REMARK 3 T33: 0.0335 T12: 0.0052 REMARK 3 T13: 0.0103 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.1828 L22: 0.2109 REMARK 3 L33: 0.2322 L12: -0.1044 REMARK 3 L13: 0.0652 L23: -0.0571 REMARK 3 S TENSOR REMARK 3 S11: -0.0329 S12: -0.0030 S13: -0.0105 REMARK 3 S21: 0.0389 S22: 0.0232 S23: 0.0216 REMARK 3 S31: -0.0029 S32: 0.0053 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 166 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7856 -15.1154 34.5262 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0035 REMARK 3 T33: 0.0350 T12: -0.0108 REMARK 3 T13: -0.0036 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3678 L22: 0.2840 REMARK 3 L33: 0.3395 L12: -0.2316 REMARK 3 L13: 0.0378 L23: 0.0261 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0129 S13: -0.0084 REMARK 3 S21: -0.0407 S22: 0.0084 S23: 0.0321 REMARK 3 S31: -0.0383 S32: 0.0307 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 362 REMARK 3 RESIDUE RANGE : C 167 C 366 REMARK 3 RESIDUE RANGE : B 167 B 371 REMARK 3 RESIDUE RANGE : D 167 D 373 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9363 7.9806 36.4511 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0394 REMARK 3 T33: 0.0389 T12: -0.0040 REMARK 3 T13: 0.0035 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.0678 L22: 0.0338 REMARK 3 L33: 0.0173 L12: -0.0333 REMARK 3 L13: -0.0202 L23: -0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0072 S13: -0.0137 REMARK 3 S21: -0.0049 S22: -0.0008 S23: 0.0071 REMARK 3 S31: 0.0039 S32: 0.0041 S33: 0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000030571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CUSTOM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ELVES REMARK 200 DATA SCALING SOFTWARE : ELVES REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 56.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1DYW.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE MONOBASIC, SODIUM REMARK 280 ACETATE, PEG8000, PH 5.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 25K, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PUTATIVE MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 45 O HOH A 178 2.01 REMARK 500 O TRP A 122 NH2 ARG A 126 2.11 REMARK 500 ND2 ASN B 145 O HOH B 292 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 23 CB VAL A 23 CG2 0.126 REMARK 500 PHE A 27 CZ PHE A 27 CE2 0.122 REMARK 500 GLY A 44 C GLU A 45 N 0.308 REMARK 500 GLU A 45 CD GLU A 45 OE1 0.109 REMARK 500 GLU A 45 CD GLU A 45 OE2 0.102 REMARK 500 PHE A 48 CZ PHE A 48 CE2 0.117 REMARK 500 SER A 79 CB SER A 79 OG 0.080 REMARK 500 SER A 100 C MET A 101 N 0.259 REMARK 500 MET A 101 CG MET A 101 SD -0.242 REMARK 500 VAL A 165 CB VAL A 165 CG2 0.133 REMARK 500 MET B 1 CG MET B 1 SD 0.206 REMARK 500 GLU B 45 CD GLU B 45 OE2 0.078 REMARK 500 TYR B 50 CG TYR B 50 CD2 0.088 REMARK 500 LYS B 153 CE LYS B 153 NZ 0.181 REMARK 500 TYR C 9 CD1 TYR C 9 CE1 0.110 REMARK 500 TYR C 9 CE2 TYR C 9 CD2 0.116 REMARK 500 GLY C 44 C GLU C 45 N 0.237 REMARK 500 GLU C 45 C ASN C 46 N 0.210 REMARK 500 PHE C 55 CE1 PHE C 55 CZ 0.149 REMARK 500 MET C 63 SD MET C 63 CE -0.632 REMARK 500 PHE C 95 C PHE C 95 O -0.119 REMARK 500 MET C 101 CA MET C 101 CB 0.159 REMARK 500 MET C 101 CB MET C 101 CG 0.454 REMARK 500 MET C 101 C ALA C 102 N -0.428 REMARK 500 PHE D 62 CB PHE D 62 CG -0.124 REMARK 500 MET D 63 SD MET D 63 CE -0.454 REMARK 500 LYS D 78 CE LYS D 78 NZ 0.163 REMARK 500 GLU D 144 CD GLU D 144 OE1 0.128 REMARK 500 GLU D 144 CD GLU D 144 OE2 -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 GLU A 45 O - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 MET A 63 CG - SD - CE ANGL. DEV. = -33.0 DEGREES REMARK 500 MET A 101 CA - CB - CG ANGL. DEV. = -23.2 DEGREES REMARK 500 MET A 101 CB - CG - SD ANGL. DEV. = 24.6 DEGREES REMARK 500 MET A 101 CG - SD - CE ANGL. DEV. = -24.7 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 6 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP B 16 OD1 - CG - OD2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 16 CB - CG - OD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 PHE B 27 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP B 30 CB - CG - OD2 ANGL. DEV. = 9.8 DEGREES REMARK 500 MET B 63 CG - SD - CE ANGL. DEV. = -25.1 DEGREES REMARK 500 ILE B 92 CG1 - CB - CG2 ANGL. DEV. = -16.3 DEGREES REMARK 500 ASP B 152 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 LYS B 155 CB - CG - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 LYS B 155 CD - CE - NZ ANGL. DEV. = 23.1 DEGREES REMARK 500 PHE C 10 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE C 10 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP C 86 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 PHE C 95 CB - CA - C ANGL. DEV. = 15.6 DEGREES REMARK 500 PHE C 95 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 SER C 100 O - C - N ANGL. DEV. = -13.0 DEGREES REMARK 500 MET C 101 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG C 126 CG - CD - NE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG C 126 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG C 126 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP D 6 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP D 16 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 GLU D 45 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 MET D 63 CG - SD - CE ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP D 138 CB - CG - OD2 ANGL. DEV. = 10.1 DEGREES REMARK 500 GLU D 144 CG - CD - OE1 ANGL. DEV. = 12.7 DEGREES REMARK 500 ASP D 162 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 27 64.74 -100.55 REMARK 500 GLU A 45 3.66 -69.88 REMARK 500 PHE A 62 -72.25 -143.04 REMARK 500 SER A 108 45.62 -140.65 REMARK 500 PHE B 62 -73.41 -136.66 REMARK 500 ASP B 73 2.18 -153.40 REMARK 500 ASN B 89 115.67 -165.59 REMARK 500 THR B 120 53.11 -145.73 REMARK 500 ASP C 16 -7.22 65.49 REMARK 500 PHE C 62 -73.68 -146.05 REMARK 500 VAL C 96 116.64 -36.54 REMARK 500 THR C 120 56.88 -143.34 REMARK 500 PHE D 27 68.55 -100.78 REMARK 500 PHE D 62 -70.38 -148.93 REMARK 500 ASN D 89 127.07 -170.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE C 95 VAL C 96 147.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 45 -18.72 REMARK 500 GLU C 45 -10.50 REMARK 500 PHE C 95 -13.13 REMARK 500 GLY C 97 -10.40 REMARK 500 SER C 100 -10.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TCRU013382AAA RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS NOT AVAILABLE IN ANY REMARK 999 REFERENCE SEQUENCE DATABASE. DBREF 1XO7 A 2 166 UNP Q4DPB9 Q4DPB9_TRYCR 30 194 DBREF 1XO7 B 2 166 UNP Q4DPB9 Q4DPB9_TRYCR 30 194 DBREF 1XO7 C 2 166 UNP Q4DPB9 Q4DPB9_TRYCR 30 194 DBREF 1XO7 D 2 166 UNP Q4DPB9 Q4DPB9_TRYCR 30 194 SEQRES 1 A 166 MET PRO VAL VAL THR ASP LYS VAL TYR PHE ASP ILE THR SEQRES 2 A 166 ILE GLY ASP GLU PRO VAL GLY ARG VAL VAL ILE GLY LEU SEQRES 3 A 166 PHE GLY ASN ASP VAL PRO LYS THR VAL GLU ASN PHE LYS SEQRES 4 A 166 GLN LEU ALA SER GLY GLU ASN GLY PHE GLY TYR LYS GLY SEQRES 5 A 166 SER ILE PHE HIS ARG VAL ILE ARG ASN PHE MET ILE GLN SEQRES 6 A 166 GLY GLY ASP PHE THR ASN PHE ASP GLY THR GLY GLY LYS SEQRES 7 A 166 SER ILE TYR GLY THR ARG PHE ASP ASP GLU ASN LEU LYS SEQRES 8 A 166 ILE LYS HIS PHE VAL GLY ALA VAL SER MET ALA ASN ALA SEQRES 9 A 166 GLY PRO ASN SER ASN GLY SER GLN PHE PHE VAL THR THR SEQRES 10 A 166 ALA PRO THR PRO TRP LEU ASP GLY ARG HIS VAL VAL PHE SEQRES 11 A 166 GLY LYS VAL VAL GLU GLY MET ASP VAL VAL LYS LYS VAL SEQRES 12 A 166 GLU ASN THR LYS THR GLY LEU ASN ASP LYS PRO LYS LYS SEQRES 13 A 166 ALA VAL LYS ILE ASN ASP CYS GLY VAL LEU SEQRES 1 B 166 MET PRO VAL VAL THR ASP LYS VAL TYR PHE ASP ILE THR SEQRES 2 B 166 ILE GLY ASP GLU PRO VAL GLY ARG VAL VAL ILE GLY LEU SEQRES 3 B 166 PHE GLY ASN ASP VAL PRO LYS THR VAL GLU ASN PHE LYS SEQRES 4 B 166 GLN LEU ALA SER GLY GLU ASN GLY PHE GLY TYR LYS GLY SEQRES 5 B 166 SER ILE PHE HIS ARG VAL ILE ARG ASN PHE MET ILE GLN SEQRES 6 B 166 GLY GLY ASP PHE THR ASN PHE ASP GLY THR GLY GLY LYS SEQRES 7 B 166 SER ILE TYR GLY THR ARG PHE ASP ASP GLU ASN LEU LYS SEQRES 8 B 166 ILE LYS HIS PHE VAL GLY ALA VAL SER MET ALA ASN ALA SEQRES 9 B 166 GLY PRO ASN SER ASN GLY SER GLN PHE PHE VAL THR THR SEQRES 10 B 166 ALA PRO THR PRO TRP LEU ASP GLY ARG HIS VAL VAL PHE SEQRES 11 B 166 GLY LYS VAL VAL GLU GLY MET ASP VAL VAL LYS LYS VAL SEQRES 12 B 166 GLU ASN THR LYS THR GLY LEU ASN ASP LYS PRO LYS LYS SEQRES 13 B 166 ALA VAL LYS ILE ASN ASP CYS GLY VAL LEU SEQRES 1 C 166 MET PRO VAL VAL THR ASP LYS VAL TYR PHE ASP ILE THR SEQRES 2 C 166 ILE GLY ASP GLU PRO VAL GLY ARG VAL VAL ILE GLY LEU SEQRES 3 C 166 PHE GLY ASN ASP VAL PRO LYS THR VAL GLU ASN PHE LYS SEQRES 4 C 166 GLN LEU ALA SER GLY GLU ASN GLY PHE GLY TYR LYS GLY SEQRES 5 C 166 SER ILE PHE HIS ARG VAL ILE ARG ASN PHE MET ILE GLN SEQRES 6 C 166 GLY GLY ASP PHE THR ASN PHE ASP GLY THR GLY GLY LYS SEQRES 7 C 166 SER ILE TYR GLY THR ARG PHE ASP ASP GLU ASN LEU LYS SEQRES 8 C 166 ILE LYS HIS PHE VAL GLY ALA VAL SER MET ALA ASN ALA SEQRES 9 C 166 GLY PRO ASN SER ASN GLY SER GLN PHE PHE VAL THR THR SEQRES 10 C 166 ALA PRO THR PRO TRP LEU ASP GLY ARG HIS VAL VAL PHE SEQRES 11 C 166 GLY LYS VAL VAL GLU GLY MET ASP VAL VAL LYS LYS VAL SEQRES 12 C 166 GLU ASN THR LYS THR GLY LEU ASN ASP LYS PRO LYS LYS SEQRES 13 C 166 ALA VAL LYS ILE ASN ASP CYS GLY VAL LEU SEQRES 1 D 166 MET PRO VAL VAL THR ASP LYS VAL TYR PHE ASP ILE THR SEQRES 2 D 166 ILE GLY ASP GLU PRO VAL GLY ARG VAL VAL ILE GLY LEU SEQRES 3 D 166 PHE GLY ASN ASP VAL PRO LYS THR VAL GLU ASN PHE LYS SEQRES 4 D 166 GLN LEU ALA SER GLY GLU ASN GLY PHE GLY TYR LYS GLY SEQRES 5 D 166 SER ILE PHE HIS ARG VAL ILE ARG ASN PHE MET ILE GLN SEQRES 6 D 166 GLY GLY ASP PHE THR ASN PHE ASP GLY THR GLY GLY LYS SEQRES 7 D 166 SER ILE TYR GLY THR ARG PHE ASP ASP GLU ASN LEU LYS SEQRES 8 D 166 ILE LYS HIS PHE VAL GLY ALA VAL SER MET ALA ASN ALA SEQRES 9 D 166 GLY PRO ASN SER ASN GLY SER GLN PHE PHE VAL THR THR SEQRES 10 D 166 ALA PRO THR PRO TRP LEU ASP GLY ARG HIS VAL VAL PHE SEQRES 11 D 166 GLY LYS VAL VAL GLU GLY MET ASP VAL VAL LYS LYS VAL SEQRES 12 D 166 GLU ASN THR LYS THR GLY LEU ASN ASP LYS PRO LYS LYS SEQRES 13 D 166 ALA VAL LYS ILE ASN ASP CYS GLY VAL LEU FORMUL 5 HOH *808(H2 O) HELIX 1 1 VAL A 31 GLY A 44 1 14 HELIX 2 2 THR A 120 ASP A 124 5 5 HELIX 3 3 GLY A 136 ASN A 145 1 10 HELIX 4 4 GLY A 149 LYS A 153 5 5 HELIX 5 5 VAL B 31 GLY B 44 1 14 HELIX 6 6 THR B 120 ASP B 124 5 5 HELIX 7 7 GLY B 136 ASN B 145 1 10 HELIX 8 8 GLY B 149 LYS B 153 5 5 HELIX 9 9 VAL C 31 GLY C 44 1 14 HELIX 10 10 THR C 120 ASP C 124 5 5 HELIX 11 11 GLY C 136 ASN C 145 1 10 HELIX 12 12 GLY C 149 LYS C 153 5 5 HELIX 13 13 VAL D 31 GLY D 44 1 14 HELIX 14 14 THR D 120 ASP D 124 5 5 HELIX 15 15 GLY D 136 ASN D 145 1 10 HELIX 16 16 GLY D 149 LYS D 153 5 5 SHEET 1 A 8 PHE A 55 ILE A 59 0 SHEET 2 A 8 MET A 63 GLY A 66 -1 O MET A 63 N ILE A 59 SHEET 3 A 8 PHE A 113 THR A 116 -1 O PHE A 113 N GLY A 66 SHEET 4 A 8 ALA A 98 MET A 101 -1 N SER A 100 O PHE A 114 SHEET 5 A 8 VAL A 129 GLU A 135 -1 O PHE A 130 N VAL A 99 SHEET 6 A 8 GLU A 17 LEU A 26 -1 N GLY A 25 O LYS A 132 SHEET 7 A 8 VAL A 8 ILE A 14 -1 N VAL A 8 O ILE A 24 SHEET 8 A 8 VAL A 158 VAL A 165 -1 O ASP A 162 N ASP A 11 SHEET 1 B 8 PHE B 55 ILE B 59 0 SHEET 2 B 8 MET B 63 GLY B 66 -1 O GLN B 65 N ARG B 57 SHEET 3 B 8 PHE B 113 THR B 116 -1 O PHE B 113 N GLY B 66 SHEET 4 B 8 ALA B 98 MET B 101 -1 N SER B 100 O PHE B 114 SHEET 5 B 8 VAL B 129 GLU B 135 -1 O GLY B 131 N VAL B 99 SHEET 6 B 8 GLU B 17 LEU B 26 -1 N GLY B 25 O LYS B 132 SHEET 7 B 8 VAL B 8 ILE B 14 -1 N VAL B 8 O ILE B 24 SHEET 8 B 8 VAL B 158 VAL B 165 -1 O ASP B 162 N ASP B 11 SHEET 1 C 8 ARG C 57 ILE C 59 0 SHEET 2 C 8 MET C 63 GLY C 66 -1 O MET C 63 N ILE C 59 SHEET 3 C 8 PHE C 113 THR C 116 -1 O VAL C 115 N ILE C 64 SHEET 4 C 8 ALA C 98 MET C 101 -1 N SER C 100 O PHE C 114 SHEET 5 C 8 VAL C 129 GLU C 135 -1 O GLY C 131 N VAL C 99 SHEET 6 C 8 GLU C 17 LEU C 26 -1 N GLY C 25 O LYS C 132 SHEET 7 C 8 VAL C 8 ILE C 14 -1 N VAL C 8 O ILE C 24 SHEET 8 C 8 VAL C 158 VAL C 165 -1 O ASP C 162 N ASP C 11 SHEET 1 D 8 PHE D 55 ILE D 59 0 SHEET 2 D 8 MET D 63 GLY D 66 -1 O MET D 63 N ILE D 59 SHEET 3 D 8 PHE D 113 THR D 116 -1 O PHE D 113 N GLY D 66 SHEET 4 D 8 ALA D 98 MET D 101 -1 N SER D 100 O PHE D 114 SHEET 5 D 8 VAL D 129 GLU D 135 -1 O PHE D 130 N VAL D 99 SHEET 6 D 8 GLU D 17 LEU D 26 -1 N GLY D 25 O LYS D 132 SHEET 7 D 8 VAL D 8 ILE D 14 -1 N VAL D 8 O ILE D 24 SHEET 8 D 8 VAL D 158 VAL D 165 -1 O ASP D 162 N ASP D 11 CRYST1 53.314 62.142 64.638 109.55 104.21 104.92 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018757 0.004999 0.007594 0.00000 SCALE2 0.000000 0.016654 0.007814 0.00000 SCALE3 0.000000 0.000000 0.017629 0.00000