PDB Short entry for 1XUT HEADER CYTOKINE RECEPTOR 26-OCT-04 1XUT TITLE SOLUTION STRUCTURE OF TACI-CRD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 13B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TACI_D2; COMPND 5 SYNONYM: TRANSMEMBRANE ACTIVATOR AND CAML INTERACTOR, TNFRSF13B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNFRSF13B, TACI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS TNF RECEPTOR, CYTOKINE, CYSTEINE-RICH DOMAIN, RECEPTOR, CYTOKINE KEYWDS 2 RECEPTOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.G.HYMOWITZ,D.R.PATEL,H.J.WALLWEBER,S.RUNYON,M.YAN,J.YIN, AUTHOR 2 S.K.SHRIVER,N.C.GORDON,B.PAN,N.J.SKELTON,R.F.KELLEY,M.A.STAROVASNIK REVDAT 4 02-MAR-22 1XUT 1 REMARK SEQADV REVDAT 3 24-FEB-09 1XUT 1 VERSN REVDAT 2 24-MAY-05 1XUT 1 JRNL REVDAT 1 09-NOV-04 1XUT 0 JRNL AUTH S.G.HYMOWITZ,D.R.PATEL,H.J.WALLWEBER,S.RUNYON,M.YAN,J.YIN, JRNL AUTH 2 S.K.SHRIVER,N.C.GORDON,B.PAN,N.J.SKELTON,R.F.KELLEY, JRNL AUTH 3 M.A.STAROVASNIK JRNL TITL STRUCTURES OF APRIL-RECEPTOR COMPLEXES: LIKE BCMA, TACI JRNL TITL 2 EMPLOYS ONLY A SINGLE CYSTEINE-RICH DOMAIN FOR HIGH AFFINITY JRNL TITL 3 LIGAND BINDING. JRNL REF J.BIOL.CHEM. V. 280 7218 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15542592 JRNL DOI 10.1074/JBC.M411714200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TALOS 2002, CNX 2002 REMARK 3 AUTHORS : CORNILESCU ET AL, 1999 (TALOS), ACCELRYS, SAN REMARK 3 DIEGO, CA (CNX) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 100 STRUCTURES WERE CALCULATED USING REMARK 3 TORSION ANGLE DYNAMICS FOLLOWED BY CARTESION DYNAMICS AND REMARK 3 MINIMIZATION. THE 20 STRUCTURES WITH THE LOWEST RESTRAINT REMARK 3 VIOLATION ENERGY WERE CHOSEN TO REPRESENT THE SOLUTION STRUCTURE. REMARK 4 REMARK 4 1XUT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030787. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 200 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.0 MM TACI_D2 UNIFORMLY REMARK 210 ENRICHED WITH 15N & 13C, 50 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM SODIUM AZIDE, REMARK 210 DIOXANE, 10% DEUTERIUM OXIDE; REMARK 210 0.8-1.0 MM TACI_D2 UNIFORMLY REMARK 210 ENRICHED WITH 15N & 13C, 50 MM REMARK 210 SODIUM PHOSPHATE, 150 MM SODIUM REMARK 210 CHLORIDE, 1 MM SODIUM AZIDE, REMARK 210 DIOXANE, 10% DEUTERIUM OXIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_ 13C REMARK 210 -SEPARATED_NOESY; 2D NOESY; 3D REMARK 210 HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000.1, SPARKY 3.11, REMARK 210 XWINNMR 3.5, CYANA 1.1 REMARK 210 METHOD USED : THE FINAL STRUCTURES WERE REMARK 210 CALCULATED USING THE PROGRAM CNX REMARK 210 (VERSION 2002; ACCELRYS, SAN REMARK 210 DIEGO, CA). REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL NMR DATA WERE PROCESSED USING FELIX (VERSION 2000.1; REMARK 210 ACCELRYS, SAN DIEGO, CA) AND ANALYZED USING SPARKY (VERSION 3.11; REMARK 210 GODDARD & KNELLER, UNIVERSITY OF CALIFORNIA, SAN FRANCISCO, CA) REMARK 210 . NOE ASSIGNMENTS WERE OBTAINED USING CANDID (HERRMANN ET AL., REMARK 210 2002). LOOSE BACKBONE DIGHEDRAL ANGLE RESTRAINTS WERE OBTAINED REMARK 210 FROM ANALYSIS OF BACKBONE CHEMICAL SHIFTS WITH THE PROGRAM TALOS REMARK 210 (CORNILESCU ET AL., 1999). REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 68 -33.78 -145.56 REMARK 500 1 GLU A 74 -165.39 -119.99 REMARK 500 1 PRO A 97 -176.62 -58.45 REMARK 500 1 PHE A 103 -69.23 -94.58 REMARK 500 1 LEU A 108 -69.12 -132.41 REMARK 500 2 TRP A 67 36.20 -97.41 REMARK 500 2 SER A 68 46.02 -164.01 REMARK 500 2 SER A 70 49.75 -173.61 REMARK 500 2 PHE A 103 -69.16 -100.65 REMARK 500 3 SER A 68 -63.37 -174.93 REMARK 500 3 ARG A 72 176.17 -59.24 REMARK 500 3 PRO A 97 -177.03 -61.40 REMARK 500 3 PHE A 103 -69.88 -94.48 REMARK 500 3 LEU A 108 -45.59 -157.74 REMARK 500 4 SER A 68 49.85 -176.68 REMARK 500 4 GLN A 95 49.04 -140.01 REMARK 500 4 ASN A 106 86.19 -58.46 REMARK 500 4 LYS A 107 -36.46 -179.14 REMARK 500 4 LEU A 108 64.93 -112.34 REMARK 500 5 TRP A 67 -82.15 -118.93 REMARK 500 5 SER A 70 103.51 -57.08 REMARK 500 5 GLN A 95 56.90 -145.51 REMARK 500 5 PRO A 97 -177.00 -64.79 REMARK 500 5 PHE A 103 -70.25 -80.10 REMARK 500 6 SER A 68 -36.32 -178.44 REMARK 500 6 SER A 70 38.22 -95.67 REMARK 500 6 GLN A 95 58.40 -143.08 REMARK 500 6 PHE A 103 -69.26 -103.35 REMARK 500 6 ASN A 106 76.12 -68.16 REMARK 500 6 LYS A 107 -41.88 -165.66 REMARK 500 7 SER A 68 37.52 -99.50 REMARK 500 7 SER A 70 -74.75 -74.24 REMARK 500 8 TRP A 67 -65.16 -102.17 REMARK 500 8 ARG A 72 171.21 -57.66 REMARK 500 8 PHE A 103 -68.53 -90.04 REMARK 500 8 LYS A 107 36.63 -94.31 REMARK 500 8 LEU A 108 43.07 -179.08 REMARK 500 9 PRO A 66 -74.53 -59.56 REMARK 500 9 SER A 70 97.60 -178.18 REMARK 500 9 LEU A 108 -35.89 -175.98 REMARK 500 10 SER A 65 58.88 -158.02 REMARK 500 10 PRO A 66 -72.66 -57.63 REMARK 500 10 PRO A 97 -178.01 -56.72 REMARK 500 11 SER A 65 108.40 -56.59 REMARK 500 11 SER A 68 -90.31 -159.70 REMARK 500 11 GLN A 95 55.71 -148.12 REMARK 500 11 PHE A 103 -68.99 -98.00 REMARK 500 11 ASN A 106 -37.95 -35.48 REMARK 500 11 LEU A 108 -177.99 -177.11 REMARK 500 12 SER A 70 43.15 -93.86 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XU1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APRIL BOUND TO TACI REMARK 900 RELATED ID: 1XU2 RELATED DB: PDB DBREF 1XUT A 68 109 UNP O14836 TR13B_HUMAN 68 109 SEQADV 1XUT GLY A 64 UNP O14836 CLONING ARTIFACT SEQADV 1XUT SER A 65 UNP O14836 CLONING ARTIFACT SEQADV 1XUT PRO A 66 UNP O14836 CLONING ARTIFACT SEQADV 1XUT TRP A 67 UNP O14836 CLONING ARTIFACT SEQRES 1 A 46 GLY SER PRO TRP SER LEU SER CYS ARG LYS GLU GLN GLY SEQRES 2 A 46 LYS PHE TYR ASP HIS LEU LEU ARG ASP CYS ILE SER CYS SEQRES 3 A 46 ALA SER ILE CYS GLY GLN HIS PRO LYS GLN CYS ALA TYR SEQRES 4 A 46 PHE CYS GLU ASN LYS LEU ARG HELIX 1 1 LYS A 98 PHE A 103 5 6 SHEET 1 A 2 LYS A 77 ASP A 80 0 SHEET 2 A 2 ASP A 85 SER A 88 -1 O ILE A 87 N PHE A 78 SSBOND 1 CYS A 71 CYS A 86 1555 1555 2.03 SSBOND 2 CYS A 89 CYS A 100 1555 1555 2.03 SSBOND 3 CYS A 93 CYS A 104 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000