PDB Short entry for 1XZ9 HEADER CELL ADHESION 12-NOV-04 1XZ9 TITLE STRUCTURE OF AF-6 PDZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AFADIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AF-6 PDZ DOMAIN; COMPND 5 SYNONYM: AF-6 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PDZ, AF-6, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.JOSHI,P.BOISGUERIN,D.LEITNER,R.VOLKMER-ENGERT,K.MOELLING,M.SCHADE, AUTHOR 2 P.SCHMIEDER,G.KRAUSE,H.OSCHKINAT REVDAT 4 02-MAR-22 1XZ9 1 REMARK SEQADV REVDAT 3 28-APR-09 1XZ9 1 JRNL REVDAT 2 24-FEB-09 1XZ9 1 VERSN REVDAT 1 15-NOV-05 1XZ9 0 JRNL AUTH M.JOSHI,C.VARGAS,P.BOISGUERIN,A.DIEHL,G.KRAUSE,P.SCHMIEDER, JRNL AUTH 2 K.MOELLING,V.HAGEN,M.SCHADE,H.OSCHKINAT JRNL TITL DISCOVERY OF LOW-MOLECULAR-WEIGHT LIGANDS FOR THE AF6 PDZ JRNL TITL 2 DOMAIN. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 45 3790 2006 JRNL REFN ISSN 1433-7851 JRNL PMID 16671149 JRNL DOI 10.1002/ANIE.200503965 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, DYANA 1.0.6 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XZ9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030929. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE, 50MM SODIUM REMARK 210 CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.25MM PDZ DOMAIN U-15N; 20MM REMARK 210 PHOSPHATE BUFFER; 50MM SODIUM REMARK 210 CHLORIDE; 90% H2O, 10% D2O; REMARK 210 1.25MM PDZ DOMAIN U-15N, 13C; REMARK 210 20MM PHOSPHATE BUFFER; 50MM REMARK 210 SODIUM CHLORIDE; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, SPARKY 3.1, DYANA REMARK 210 1.0.6 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 80 HG1 THR A 84 1.46 REMARK 500 H VAL A 66 O ARG A 69 1.49 REMARK 500 O LEU A 71 H GLY A 73 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -66.20 -148.70 REMARK 500 1 LYS A 8 174.62 53.59 REMARK 500 1 PRO A 10 -89.67 -75.01 REMARK 500 1 GLU A 11 -73.81 82.29 REMARK 500 1 LEU A 17 -149.19 -66.48 REMARK 500 1 LYS A 19 -114.67 -59.79 REMARK 500 1 ASN A 21 -73.45 158.54 REMARK 500 1 ALA A 29 -166.49 159.18 REMARK 500 1 ALA A 30 -145.87 -177.85 REMARK 500 1 LYS A 31 108.89 -172.53 REMARK 500 1 LYS A 37 91.96 178.77 REMARK 500 1 SER A 44 -168.80 -169.73 REMARK 500 1 ALA A 50 -38.71 -39.58 REMARK 500 1 ALA A 51 -76.94 -53.03 REMARK 500 1 ARG A 56 -41.21 -155.54 REMARK 500 1 ALA A 58 -169.85 168.60 REMARK 500 1 VAL A 72 55.51 -69.02 REMARK 500 1 GLN A 76 -32.79 -37.53 REMARK 500 1 THR A 84 -75.30 -69.30 REMARK 500 1 SER A 87 -178.83 82.72 REMARK 500 1 SER A 88 7.89 -66.34 REMARK 500 1 ALA A 99 -179.98 -172.13 REMARK 500 1 ILE A 100 69.92 31.33 REMARK 500 2 GLU A 11 -73.86 79.00 REMARK 500 2 LEU A 17 -150.84 -59.69 REMARK 500 2 LYS A 18 12.55 58.46 REMARK 500 2 LYS A 19 -98.02 -66.41 REMARK 500 2 ASN A 21 -29.39 159.32 REMARK 500 2 ALA A 29 -164.10 160.04 REMARK 500 2 ALA A 30 -144.38 179.01 REMARK 500 2 LYS A 31 108.85 177.50 REMARK 500 2 LYS A 37 81.37 175.53 REMARK 500 2 SER A 44 -162.41 -171.43 REMARK 500 2 ALA A 50 -38.07 -39.49 REMARK 500 2 ALA A 51 -85.67 -51.39 REMARK 500 2 ARG A 56 -42.04 -158.59 REMARK 500 2 ALA A 58 -179.97 160.13 REMARK 500 2 VAL A 72 55.25 -68.33 REMARK 500 2 LEU A 74 -76.58 -110.24 REMARK 500 2 SER A 75 127.92 152.84 REMARK 500 2 GLN A 76 -36.06 -39.92 REMARK 500 2 THR A 84 -80.02 -66.67 REMARK 500 2 ARG A 85 60.89 -67.70 REMARK 500 2 SER A 87 -178.61 81.55 REMARK 500 2 SER A 88 3.50 -61.73 REMARK 500 2 LYS A 96 -63.44 -179.13 REMARK 500 2 GLN A 97 109.83 69.81 REMARK 500 2 ALA A 99 105.95 57.44 REMARK 500 3 LEU A 6 64.97 61.62 REMARK 500 3 GLU A 9 89.02 64.97 REMARK 500 REMARK 500 THIS ENTRY HAS 459 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1XZ9 A 6 101 UNP Q5TIG6 Q5TIG6_HUMAN 985 1079 SEQADV 1XZ9 GLY A 1 UNP Q5TIG6 CLONING ARTIFACT SEQADV 1XZ9 PRO A 2 UNP Q5TIG6 CLONING ARTIFACT SEQADV 1XZ9 LEU A 3 UNP Q5TIG6 CLONING ARTIFACT SEQADV 1XZ9 GLY A 4 UNP Q5TIG6 CLONING ARTIFACT SEQADV 1XZ9 SER A 5 UNP Q5TIG6 CLONING ARTIFACT SEQADV 1XZ9 VAL A 53 UNP Q5TIG6 SEE REMARK 999 SEQRES 1 A 101 GLY PRO LEU GLY SER LEU ARG LYS GLU PRO GLU ILE ILE SEQRES 2 A 101 THR VAL THR LEU LYS LYS GLN ASN GLY MET GLY LEU SER SEQRES 3 A 101 ILE VAL ALA ALA LYS GLY ALA GLY GLN ASP LYS LEU GLY SEQRES 4 A 101 ILE TYR VAL LYS SER VAL VAL LYS GLY GLY ALA ALA ASP SEQRES 5 A 101 VAL ASP GLY ARG LEU ALA ALA GLY ASP GLN LEU LEU SER SEQRES 6 A 101 VAL ASP GLY ARG SER LEU VAL GLY LEU SER GLN GLU ARG SEQRES 7 A 101 ALA ALA GLU LEU MET THR ARG THR SER SER VAL VAL THR SEQRES 8 A 101 LEU GLU VAL ALA LYS GLN GLY ALA ILE TYR HELIX 1 1 GLY A 49 ASP A 54 1 6 HELIX 2 2 SER A 75 ARG A 85 1 11 SHEET 1 A 4 GLU A 11 VAL A 15 0 SHEET 2 A 4 VAL A 90 ALA A 95 -1 O VAL A 90 N VAL A 15 SHEET 3 A 4 GLN A 62 VAL A 66 -1 N LEU A 64 O GLU A 93 SHEET 4 A 4 ARG A 69 SER A 70 -1 O ARG A 69 N VAL A 66 SHEET 1 B 2 LEU A 25 VAL A 28 0 SHEET 2 B 2 TYR A 41 VAL A 45 -1 O SER A 44 N SER A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000