PDB Short entry for 1XZQ HEADER HYDROLASE 12-NOV-04 1XZQ TITLE STRUCTURE OF THE GTP-BINDING PROTEIN TRME FROM THERMOTOGA MARITIMA TITLE 2 COMPLEXED WITH 5-FORMYL-THF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRNA MODIFICATION GTPASE TRME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRME GTP-BINDING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROBABLE TRNA MODIFICATION GTPASE TRME; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-117); COMPND 10 SYNONYM: TRME GTP-BINDING PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TRME; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3 (TRME-); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 12 ORGANISM_TAXID: 2336; SOURCE 13 GENE: TRME; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21DE3 (TRME-); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS GTP-BINDING, THF-BINDING, TRNA-MODIFICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCRIMA,I.R.VETTER,M.E.ARMENGOD,A.WITTINGHOFER REVDAT 4 13-MAR-24 1XZQ 1 REMARK SEQADV SHEET REVDAT 3 24-FEB-09 1XZQ 1 VERSN REVDAT 2 26-APR-05 1XZQ 1 JRNL REVDAT 1 04-JAN-05 1XZQ 0 JRNL AUTH A.SCRIMA,I.R.VETTER,M.E.ARMENGOD,A.WITTINGHOFER JRNL TITL THE STRUCTURE OF THE TRME GTP-BINDING PROTEIN AND ITS JRNL TITL 2 IMPLICATIONS FOR TRNA MODIFICATION JRNL REF EMBO J. V. 24 23 2005 JRNL REFN ISSN 0261-4189 JRNL PMID 15616586 JRNL DOI 10.1038/SJ.EMBOJ.7600507 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2391 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.69000 REMARK 3 B22 (A**2) : -17.69000 REMARK 3 B33 (A**2) : 35.38000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.63 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.62 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, MES, PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.89333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.94667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.89333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.94667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HOMODIMER (OBTAINED BY REMARK 300 SUPERIMPOSITION OF THE FULL-LENGTH MOLECULE (A) AND THE N-TERMINAL REMARK 300 DOMAIN (B)). DIMERISATION VIA THE N-TERMINAL DOMAIN IS ESSENTIAL REMARK 300 FOR THE FORMATION OF THE THF-BINDING SITE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 195.04500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 112.60928 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -31 REMARK 465 GLY A -30 REMARK 465 SER A -29 REMARK 465 SER A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 GLY A -19 REMARK 465 LEU A -18 REMARK 465 VAL A -17 REMARK 465 PRO A -16 REMARK 465 ARG A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 TRP A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 PRO A -8 REMARK 465 ASN A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 VAL A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 MET B -31 REMARK 465 GLY B -30 REMARK 465 SER B -29 REMARK 465 SER B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 SER B -21 REMARK 465 SER B -20 REMARK 465 GLY B -19 REMARK 465 LEU B -18 REMARK 465 VAL B -17 REMARK 465 PRO B -16 REMARK 465 ARG B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 TRP B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 PRO B -8 REMARK 465 ASN B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 VAL B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 LEU B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 242 CG1 CG2 CD1 REMARK 470 PRO A 243 CG CD REMARK 470 THR A 245 OG1 CG2 REMARK 470 THR A 246 OG1 CG2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 VAL A 249 CG1 CG2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 THR A 273 OG1 CG2 REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 ASP A 275 CG OD1 OD2 REMARK 470 LEU A 276 CG CD1 CD2 REMARK 470 VAL A 277 CG1 CG2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 280 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 243 N - CA - CB ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 21.69 -78.93 REMARK 500 ILE A 40 95.21 -52.20 REMARK 500 GLU A 52 -62.65 -99.89 REMARK 500 ASN A 53 -42.21 -138.29 REMARK 500 ASP A 58 130.20 178.58 REMARK 500 SER A 67 -52.29 -7.98 REMARK 500 PRO A 68 -72.80 -64.97 REMARK 500 SER A 70 -176.84 -173.55 REMARK 500 GLU A 74 -165.26 -118.42 REMARK 500 VAL A 77 111.96 -160.82 REMARK 500 CYS A 81 -165.87 -102.22 REMARK 500 PRO A 85 -11.89 -46.93 REMARK 500 ALA A 100 173.26 -56.55 REMARK 500 ASP A 119 -165.82 -71.61 REMARK 500 GLU A 176 -87.60 -95.92 REMARK 500 THR A 181 -31.58 -38.88 REMARK 500 PRO A 243 101.00 -174.82 REMARK 500 ARG A 247 81.49 59.81 REMARK 500 SER A 251 -71.62 -62.12 REMARK 500 VAL A 269 83.97 -65.55 REMARK 500 THR A 273 67.17 63.16 REMARK 500 ASN A 274 105.80 -55.75 REMARK 500 LYS A 333 63.61 -106.28 REMARK 500 THR A 345 -171.55 -172.75 REMARK 500 GLU A 408 17.20 -67.66 REMARK 500 MET A 410 159.49 -41.28 REMARK 500 PHE A 446 -128.81 -97.50 REMARK 500 ASP B 2 155.68 -49.25 REMARK 500 ALA B 45 33.23 -83.18 REMARK 500 ILE B 46 136.22 -31.03 REMARK 500 GLU B 52 75.46 -114.56 REMARK 500 ASN B 53 84.44 49.14 REMARK 500 SER B 67 -47.00 -22.39 REMARK 500 SER B 70 -170.31 -174.06 REMARK 500 GLU B 74 -167.23 -110.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FON A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FON B 118 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XZP RELATED DB: PDB REMARK 900 THE GTP-BINDING PROTEIN TRME DBREF 1XZQ A 1 450 UNP Q9WYA4 TRME_THEMA 1 450 DBREF 1XZQ B 1 117 UNP Q9WYA4 TRME_THEMA 1 117 SEQADV 1XZQ MET A -31 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -30 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -29 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -28 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -27 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -26 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -25 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -24 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -23 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -22 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -21 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -20 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -19 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU A -18 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL A -17 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO A -16 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ARG A -15 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -14 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -13 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS A -12 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ TRP A -11 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY A -10 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -9 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO A -8 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASN A -7 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -6 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -5 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER A -4 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL A -3 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASP A -2 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LYS A -1 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU A 0 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ MET B -31 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -30 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -29 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -28 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -27 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -26 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -25 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -24 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -23 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -22 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -21 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -20 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -19 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU B -18 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL B -17 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO B -16 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ARG B -15 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -14 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -13 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ HIS B -12 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ TRP B -11 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ GLY B -10 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -9 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ PRO B -8 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASN B -7 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -6 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -5 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ SER B -4 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ VAL B -3 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ ASP B -2 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LYS B -1 UNP Q9WYA4 EXPRESSION TAG SEQADV 1XZQ LEU B 0 UNP Q9WYA4 EXPRESSION TAG SEQRES 1 A 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 482 LEU VAL PRO ARG GLY SER HIS TRP GLY SER PRO ASN SER SEQRES 3 A 482 SER SER VAL ASP LYS LEU MET ASP THR ILE VAL ALA VAL SEQRES 4 A 482 ALA THR PRO PRO GLY LYS GLY ALA ILE ALA ILE LEU ARG SEQRES 5 A 482 LEU SER GLY PRO ASP SER TRP LYS ILE VAL GLN LYS HIS SEQRES 6 A 482 LEU ARG THR ARG SER LYS ILE VAL PRO ARG LYS ALA ILE SEQRES 7 A 482 HIS GLY TRP ILE HIS GLU ASN GLY GLU ASP VAL ASP GLU SEQRES 8 A 482 VAL VAL VAL VAL PHE TYR LYS SER PRO LYS SER TYR THR SEQRES 9 A 482 GLY GLU ASP MET VAL GLU VAL MET CYS HIS GLY GLY PRO SEQRES 10 A 482 LEU VAL VAL LYS LYS LEU LEU ASP LEU PHE LEU LYS SER SEQRES 11 A 482 GLY ALA ARG MET ALA GLU PRO GLY GLU PHE THR LYS ARG SEQRES 12 A 482 ALA PHE LEU ASN GLY LYS MET ASP LEU THR SER ALA GLU SEQRES 13 A 482 ALA VAL ARG ASP LEU ILE GLU ALA LYS SER GLU THR SER SEQRES 14 A 482 LEU LYS LEU SER LEU ARG ASN LEU LYS GLY GLY LEU ARG SEQRES 15 A 482 ASP PHE VAL ASP SER LEU ARG ARG GLU LEU ILE GLU VAL SEQRES 16 A 482 LEU ALA GLU ILE ARG VAL GLU LEU ASP TYR PRO ASP GLU SEQRES 17 A 482 ILE GLU THR ASN THR GLY GLU VAL VAL THR ARG LEU GLU SEQRES 18 A 482 ARG ILE LYS GLU LYS LEU THR GLU GLU LEU LYS LYS ALA SEQRES 19 A 482 ASP ALA GLY ILE LEU LEU ASN ARG GLY LEU ARG MET VAL SEQRES 20 A 482 ILE VAL GLY LYS PRO ASN VAL GLY LYS SER THR LEU LEU SEQRES 21 A 482 ASN ARG LEU LEU ASN GLU ASP ARG ALA ILE VAL THR ASP SEQRES 22 A 482 ILE PRO GLY THR THR ARG ASP VAL ILE SER GLU GLU ILE SEQRES 23 A 482 VAL ILE ARG GLY ILE LEU PHE ARG ILE VAL ASP THR ALA SEQRES 24 A 482 GLY VAL ARG SER GLU THR ASN ASP LEU VAL GLU ARG LEU SEQRES 25 A 482 GLY ILE GLU ARG THR LEU GLN GLU ILE GLU LYS ALA ASP SEQRES 26 A 482 ILE VAL LEU PHE VAL LEU ASP ALA SER SER PRO LEU ASP SEQRES 27 A 482 GLU GLU ASP ARG LYS ILE LEU GLU ARG ILE LYS ASN LYS SEQRES 28 A 482 ARG TYR LEU VAL VAL ILE ASN LYS VAL ASP VAL VAL GLU SEQRES 29 A 482 LYS ILE ASN GLU GLU GLU ILE LYS ASN LYS LEU GLY THR SEQRES 30 A 482 ASP ARG HIS MET VAL LYS ILE SER ALA LEU LYS GLY GLU SEQRES 31 A 482 GLY LEU GLU LYS LEU GLU GLU SER ILE TYR ARG GLU THR SEQRES 32 A 482 GLN GLU ILE PHE GLU ARG GLY SER ASP SER LEU ILE THR SEQRES 33 A 482 ASN LEU ARG GLN LYS GLN LEU LEU GLU ASN VAL LYS GLY SEQRES 34 A 482 HIS LEU GLU ASP ALA ILE LYS SER LEU LYS GLU GLY MET SEQRES 35 A 482 PRO VAL ASP MET ALA SER ILE ASP LEU GLU ARG ALA LEU SEQRES 36 A 482 ASN LEU LEU ASP GLU VAL THR GLY ARG SER PHE ARG GLU SEQRES 37 A 482 ASP LEU LEU ASP THR ILE PHE SER ASN PHE CYS VAL GLY SEQRES 38 A 482 LYS SEQRES 1 B 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 149 LEU VAL PRO ARG GLY SER HIS TRP GLY SER PRO ASN SER SEQRES 3 B 149 SER SER VAL ASP LYS LEU MET ASP THR ILE VAL ALA VAL SEQRES 4 B 149 ALA THR PRO PRO GLY LYS GLY ALA ILE ALA ILE LEU ARG SEQRES 5 B 149 LEU SER GLY PRO ASP SER TRP LYS ILE VAL GLN LYS HIS SEQRES 6 B 149 LEU ARG THR ARG SER LYS ILE VAL PRO ARG LYS ALA ILE SEQRES 7 B 149 HIS GLY TRP ILE HIS GLU ASN GLY GLU ASP VAL ASP GLU SEQRES 8 B 149 VAL VAL VAL VAL PHE TYR LYS SER PRO LYS SER TYR THR SEQRES 9 B 149 GLY GLU ASP MET VAL GLU VAL MET CYS HIS GLY GLY PRO SEQRES 10 B 149 LEU VAL VAL LYS LYS LEU LEU ASP LEU PHE LEU LYS SER SEQRES 11 B 149 GLY ALA ARG MET ALA GLU PRO GLY GLU PHE THR LYS ARG SEQRES 12 B 149 ALA PHE LEU ASN GLY LYS HET FON A 451 34 HET FON B 118 34 HETNAM FON N-{[4-({[(6R)-2-AMINO-5-FORMYL-4-OXO-1,4,5,6,7,8- HETNAM 2 FON HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)PHENYL]CARBONYL}- HETNAM 3 FON L-GLUTAMIC ACID HETSYN FON [6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE; 6R-FOLINIC ACID FORMUL 3 FON 2(C20 H23 N7 O7) HELIX 1 1 ASP A 25 LYS A 32 1 8 HELIX 2 2 GLY A 84 LYS A 97 1 14 HELIX 3 3 GLY A 106 ASN A 115 1 10 HELIX 4 4 ASP A 119 ALA A 132 1 14 HELIX 5 5 SER A 134 LYS A 146 1 13 HELIX 6 6 GLY A 147 TYR A 173 1 27 HELIX 7 7 ASN A 180 LYS A 200 1 21 HELIX 8 8 ALA A 202 GLY A 211 1 10 HELIX 9 9 VAL A 222 LYS A 224 5 3 HELIX 10 10 SER A 225 ASP A 235 1 11 HELIX 11 11 GLY A 281 ILE A 289 1 9 HELIX 12 12 ASP A 306 LYS A 317 1 12 HELIX 13 13 ASN A 335 LEU A 343 1 9 HELIX 14 14 GLY A 359 GLU A 370 1 12 HELIX 15 15 GLN A 372 SER A 379 1 8 HELIX 16 16 ASN A 385 GLU A 408 1 24 HELIX 17 17 PRO A 411 THR A 430 1 20 HELIX 18 18 ARG A 435 SER A 444 1 10 HELIX 19 19 ASP B 25 LYS B 32 1 8 HELIX 20 20 GLY B 84 LYS B 97 1 14 HELIX 21 21 GLY B 106 ASN B 115 1 10 SHEET 1 A 4 GLU A 59 TYR A 65 0 SHEET 2 A 4 MET A 76 CYS A 81 -1 O MET A 76 N TYR A 65 SHEET 3 A 4 ALA A 17 SER A 22 -1 N LEU A 19 O VAL A 79 SHEET 4 A 4 ILE A 4 VAL A 7 -1 N ALA A 6 O ARG A 20 SHEET 1 B 6 GLU A 252 ILE A 256 0 SHEET 2 B 6 ILE A 259 ASP A 265 -1 O ILE A 263 N GLU A 252 SHEET 3 B 6 LEU A 212 VAL A 217 1 N MET A 214 O ARG A 262 SHEET 4 B 6 ILE A 294 ASP A 300 1 O LEU A 296 N VAL A 217 SHEET 5 B 6 TYR A 321 LYS A 327 1 O VAL A 324 N LEU A 299 SHEET 6 B 6 MET A 349 SER A 353 1 O VAL A 350 N ILE A 325 SHEET 1 C 5 ILE B 46 ILE B 50 0 SHEET 2 C 5 VAL B 57 TYR B 65 -1 O VAL B 57 N ILE B 50 SHEET 3 C 5 MET B 76 HIS B 82 -1 O MET B 80 N VAL B 61 SHEET 4 C 5 ILE B 16 SER B 22 -1 N LEU B 19 O VAL B 79 SHEET 5 C 5 ILE B 4 VAL B 7 -1 N ILE B 4 O SER B 22 SITE 1 AC1 12 ARG A 20 LYS A 69 SER A 70 TYR A 71 SITE 2 AC1 12 GLU A 78 LYS A 117 LYS A 450 ILE B 16 SITE 3 AC1 12 HIS B 47 GLU B 59 VAL B 61 MET B 80 SITE 1 AC2 13 ILE A 16 HIS A 47 GLU A 59 VAL A 61 SITE 2 AC2 13 MET A 80 HIS A 82 ARG B 20 ARG B 43 SITE 3 AC2 13 PRO B 68 LYS B 69 SER B 70 TYR B 71 SITE 4 AC2 13 GLU B 78 CRYST1 130.030 130.030 113.840 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007691 0.004440 0.000000 0.00000 SCALE2 0.000000 0.008880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008784 0.00000