PDB Short entry for 1Y1E HEADER OXIDOREDUCTASE 18-NOV-04 1Y1E TITLE HUMAN FORMYLGLYCINE GENERATING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-ALPHA-FORMYGLYCINE-GENERATING ENZYME; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 73-383; COMPND 5 SYNONYM: FGE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HT1080; SOURCE 9 EXPRESSION_SYSTEM_CELL: FIBROSARCOMA TUMOR CELLS KEYWDS FORMYLGLYCINE, MULTIPLE SULFATASE DEFICIENCY, CYSTEINE SULFENIC ACID, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,A.DICKMANNS,R.FICNER REVDAT 5 03-APR-24 1Y1E 1 HETSYN REVDAT 4 29-JUL-20 1Y1E 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 13-JUL-11 1Y1E 1 VERSN REVDAT 2 24-FEB-09 1Y1E 1 VERSN REVDAT 1 31-MAY-05 1Y1E 0 JRNL AUTH T.DIERKS,A.DICKMANNS,A.PREUSSER-KUNZE,B.SCHMIDT,M.MARIAPPAN, JRNL AUTH 2 K.VON FIGURA,R.FICNER,M.G.RUDOLPH JRNL TITL MOLECULAR BASIS FOR MULTIPLE SULFATASE DEFICIENCY AND JRNL TITL 2 MECHANISM FOR FORMYLGLYCINE GENERATION OF THE HUMAN JRNL TITL 3 FORMYLGLYCINE-GENERATING ENZYME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 121 541 2005 JRNL REFN ISSN 0092-8674 JRNL PMID 15907468 JRNL DOI 10.1016/J.CELL.2005.03.001 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 29329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1461 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.71000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2297 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1927 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3141 ; 1.357 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4499 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 6.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.806 ;23.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;13.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.326 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2582 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 497 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 493 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2013 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1119 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1132 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 294 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.087 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.013 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1410 ; 0.738 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 552 ; 0.152 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2212 ; 1.095 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 1.523 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 929 ; 2.211 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF THE FGE PARALOGUE PFGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS/HCL, CACL2, PEG4000, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.97800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.00700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.97800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.00700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIC CONTAINS THE BIOLOGICALLY RELEVANT FORM REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU X 73 REMARK 465 ALA X 74 REMARK 465 ASN X 75 REMARK 465 ALA X 76 REMARK 465 PRO X 77 REMARK 465 GLY X 78 REMARK 465 PRO X 79 REMARK 465 VAL X 80 REMARK 465 PRO X 81 REMARK 465 GLY X 82 REMARK 465 GLU X 83 REMARK 465 ARG X 84 REMARK 465 GLN X 85 REMARK 465 SER X 163 REMARK 465 GLU X 164 REMARK 465 GLN X 165 REMARK 465 VAL X 166 REMARK 465 LYS X 167 REMARK 465 THR X 168 REMARK 465 ASN X 169 REMARK 465 ILE X 170 REMARK 465 GLN X 171 REMARK 465 GLN X 172 REMARK 465 ALA X 173 REMARK 465 VAL X 174 REMARK 465 ALA X 175 REMARK 465 ALA X 176 REMARK 465 THR X 372 REMARK 465 MET X 373 REMARK 465 ASP X 374 REMARK 465 ARG X 375 REMARK 465 GLY X 376 REMARK 465 SER X 377 REMARK 465 HIS X 378 REMARK 465 HIS X 379 REMARK 465 HIS X 380 REMARK 465 HIS X 381 REMARK 465 HIS X 382 REMARK 465 HIS X 383 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS X 337 O CYS X 341 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 213 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN X 251 77.67 -118.47 REMARK 500 ILE X 260 -157.73 -120.80 REMARK 500 PHE X 284 159.98 75.67 REMARK 500 ASN X 297 -103.05 68.59 REMARK 500 CYS X 341 -56.47 -127.41 REMARK 500 TYR X 342 59.20 -148.26 REMARK 500 TYR X 344 31.20 -86.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 130 OE2 REMARK 620 2 ASN X 293 O 92.7 REMARK 620 3 GLY X 296 O 95.8 86.4 REMARK 620 4 ALA X 298 O 87.3 176.0 89.6 REMARK 620 5 GLU X 300 OE2 92.5 80.3 164.7 103.7 REMARK 620 6 HOH X1007 O 159.2 107.6 81.9 72.1 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X 259 OD1 REMARK 620 2 ILE X 260 O 102.0 REMARK 620 3 ASP X 273 OD2 87.7 79.2 REMARK 620 4 ASP X 273 OD1 96.3 128.2 53.5 REMARK 620 5 PHE X 275 O 90.2 147.7 131.6 78.8 REMARK 620 6 HOH X1011 O 176.4 81.5 93.8 82.0 86.3 REMARK 620 7 HOH X1013 O 90.8 71.3 149.4 156.6 78.9 89.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y1F RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH CYSTEINE SULFENIC ACID REMARK 900 RELATED ID: 1Y1G RELATED DB: PDB REMARK 900 THE SAME PROTEIN, DOUBLE SULFONIC ACID FORM REMARK 900 RELATED ID: 1Y1H RELATED DB: PDB REMARK 900 THE SAME PROTEIN, OXIDISED CYS REFINED AS HYDROPEROXIDE REMARK 900 RELATED ID: 1Y1I RELATED DB: PDB REMARK 900 THE SAME PROTEIN, REDUCED FORM REMARK 900 RELATED ID: 1Y1J RELATED DB: PDB REMARK 900 THE SAME PROTEIN, SULFONIC ACID/DESULFURATED FORM DBREF 1Y1E X 73 374 UNP Q8NBK3 SUMF1_HUMAN 73 374 SEQADV 1Y1E ARG X 375 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E GLY X 376 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E SER X 377 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E HIS X 378 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E HIS X 379 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E HIS X 380 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E HIS X 381 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E HIS X 382 UNP Q8NBK3 EXPRESSION TAG SEQADV 1Y1E HIS X 383 UNP Q8NBK3 EXPRESSION TAG SEQRES 1 X 311 GLU ALA ASN ALA PRO GLY PRO VAL PRO GLY GLU ARG GLN SEQRES 2 X 311 LEU ALA HIS SER LYS MET VAL PRO ILE PRO ALA GLY VAL SEQRES 3 X 311 PHE THR MET GLY THR ASP ASP PRO GLN ILE LYS GLN ASP SEQRES 4 X 311 GLY GLU ALA PRO ALA ARG ARG VAL THR ILE ASP ALA PHE SEQRES 5 X 311 TYR MET ASP ALA TYR GLU VAL SER ASN THR GLU PHE GLU SEQRES 6 X 311 LYS PHE VAL ASN SER THR GLY TYR LEU THR GLU ALA GLU SEQRES 7 X 311 LYS PHE GLY ASP SER PHE VAL PHE GLU GLY MET LEU SER SEQRES 8 X 311 GLU GLN VAL LYS THR ASN ILE GLN GLN ALA VAL ALA ALA SEQRES 9 X 311 ALA PRO TRP TRP LEU PRO VAL LYS GLY ALA ASN TRP ARG SEQRES 10 X 311 HIS PRO GLU GLY PRO ASP SER THR ILE LEU HIS ARG PRO SEQRES 11 X 311 ASP HIS PRO VAL LEU HIS VAL SER TRP ASN ASP ALA VAL SEQRES 12 X 311 ALA TYR CYS THR TRP ALA GLY LYS ARG LEU PRO THR GLU SEQRES 13 X 311 ALA GLU TRP GLU TYR SER CYS ARG GLY GLY LEU HIS ASN SEQRES 14 X 311 ARG LEU PHE PRO TRP GLY ASN LYS LEU GLN PRO LYS GLY SEQRES 15 X 311 GLN HIS TYR ALA ASN ILE TRP GLN GLY GLU PHE PRO VAL SEQRES 16 X 311 THR ASN THR GLY GLU ASP GLY PHE GLN GLY THR ALA PRO SEQRES 17 X 311 VAL ASP ALA PHE PRO PRO ASN GLY TYR GLY LEU TYR ASN SEQRES 18 X 311 ILE VAL GLY ASN ALA TRP GLU TRP THR SER ASP TRP TRP SEQRES 19 X 311 THR VAL HIS HIS SER VAL GLU GLU THR LEU ASN PRO LYS SEQRES 20 X 311 GLY PRO PRO SER GLY LYS ASP ARG VAL LYS LYS GLY GLY SEQRES 21 X 311 SER TYR MET CYS HIS ARG SER TYR CYS TYR ARG TYR ARG SEQRES 22 X 311 CYS ALA ALA ARG SER GLN ASN THR PRO ASP SER SER ALA SEQRES 23 X 311 SER ASN LEU GLY PHE ARG CYS ALA ALA ASP ARG LEU PRO SEQRES 24 X 311 THR MET ASP ARG GLY SER HIS HIS HIS HIS HIS HIS MODRES 1Y1E ASN X 141 ASN GLYCOSYLATION SITE HET NAG X 1 14 HET CA X1001 1 HET CA X1002 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *407(H2 O) HELIX 1 1 ILE X 108 GLY X 112 5 5 HELIX 2 2 SER X 132 GLY X 144 1 13 HELIX 3 3 THR X 147 GLY X 153 1 7 HELIX 4 4 GLY X 160 LEU X 162 5 3 HELIX 5 5 SER X 210 ALA X 221 1 12 HELIX 6 6 THR X 227 GLY X 237 1 11 HELIX 7 7 GLN X 251 GLN X 255 5 5 SHEET 1 A 3 MET X 91 ILE X 94 0 SHEET 2 A 3 PHE X 124 ASP X 127 -1 O PHE X 124 N ILE X 94 SHEET 3 A 3 ALA X 366 ALA X 367 -1 O ALA X 367 N TYR X 125 SHEET 1 B 3 GLY X 97 MET X 101 0 SHEET 2 B 3 ARG X 117 ILE X 121 -1 O ARG X 117 N MET X 101 SHEET 3 B 3 THR X 315 LEU X 316 1 O THR X 315 N THR X 120 SHEET 1 C 2 ASP X 154 PHE X 158 0 SHEET 2 C 2 TRP X 180 LYS X 184 -1 O VAL X 183 N SER X 155 SHEET 1 D 4 SER X 350 ASN X 352 0 SHEET 2 D 4 ARG X 327 LYS X 330 -1 N ARG X 327 O ASN X 352 SHEET 3 D 4 TRP X 299 TRP X 305 -1 N GLU X 300 O LYS X 330 SHEET 4 D 4 LEU X 361 GLY X 362 1 O GLY X 362 N TRP X 299 SSBOND 1 CYS X 218 CYS X 365 1555 1555 2.05 SSBOND 2 CYS X 235 CYS X 346 1555 1555 2.06 SSBOND 3 CYS X 336 CYS X 341 1555 1555 2.04 LINK C1 NAG X 1 ND2 ASN X 141 1555 1555 1.45 LINK OE2 GLU X 130 CA CA X1001 1555 1555 2.28 LINK OD1 ASN X 259 CA CA X1002 1555 1555 2.35 LINK O ILE X 260 CA CA X1002 1555 1555 2.27 LINK OD2 ASP X 273 CA CA X1002 1555 1555 2.44 LINK OD1 ASP X 273 CA CA X1002 1555 1555 2.46 LINK O PHE X 275 CA CA X1002 1555 1555 2.39 LINK O ASN X 293 CA CA X1001 1555 1555 2.37 LINK O GLY X 296 CA CA X1001 1555 1555 2.46 LINK O ALA X 298 CA CA X1001 1555 1555 2.37 LINK OE2 GLU X 300 CA CA X1001 1555 1555 2.50 LINK CA CA X1001 O HOH X1007 1555 1555 2.42 LINK CA CA X1002 O HOH X1011 1555 1555 2.48 LINK CA CA X1002 O HOH X1013 1555 1555 2.48 CISPEP 1 ALA X 114 PRO X 115 0 -2.74 CISPEP 2 PHE X 265 PRO X 266 0 1.85 CRYST1 61.956 110.014 43.474 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023002 0.00000