PDB Short entry for 1Y1F HEADER OXIDOREDUCTASE 18-NOV-04 1Y1F TITLE HUMAN FORMYLGLYCINE GENERATING ENZYME WITH CYSTEINE SULFENIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-ALPHA-FORMYGLYCINE-GENERATING ENZYME; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 73-383; COMPND 5 SYNONYM: FGE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HT1080; SOURCE 9 EXPRESSION_SYSTEM_CELL: FIBROSARCOMA TUMOR CELLS KEYWDS FORMYLGLYCINE, MULTIPLE SULFATASE DEFICIENCY, CYSTEINE SULFENIC ACID, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,A.DICKMANNS,R.FICNER REVDAT 4 29-JUL-20 1Y1F 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 1Y1F 1 VERSN REVDAT 2 24-FEB-09 1Y1F 1 VERSN REVDAT 1 31-MAY-05 1Y1F 0 JRNL AUTH T.DIERKS,A.DICKMANNS,A.PREUSSER-KUNZE,B.SCHMIDT,M.MARIAPPAN, JRNL AUTH 2 K.VON FIGURA,R.FICNER,M.G.RUDOLPH JRNL TITL MOLECULAR BASIS FOR MULTIPLE SULFATASE DEFICIENCY AND JRNL TITL 2 MECHANISM FOR FORMYLGLYCINE GENERATION OF THE HUMAN JRNL TITL 3 FORMYLGLYCINE-GENERATING ENZYME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 121 541 2005 JRNL REFN ISSN 0092-8674 JRNL PMID 15907468 JRNL DOI 10.1016/J.CELL.2005.03.001 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 23261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2163 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2311 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1935 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3154 ; 1.412 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4519 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ;14.309 ; 5.110 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.573 ;23.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;13.208 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2575 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 468 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2018 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1129 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1173 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 314 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.097 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1409 ; 0.939 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 549 ; 0.218 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2204 ; 1.326 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 1.938 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 950 ; 2.840 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Y1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000030994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.87700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.87700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU X 73 REMARK 465 ALA X 74 REMARK 465 ASN X 75 REMARK 465 ALA X 76 REMARK 465 PRO X 77 REMARK 465 GLY X 78 REMARK 465 PRO X 79 REMARK 465 VAL X 80 REMARK 465 PRO X 81 REMARK 465 GLY X 82 REMARK 465 GLU X 83 REMARK 465 ARG X 84 REMARK 465 GLN X 85 REMARK 465 SER X 163 REMARK 465 GLU X 164 REMARK 465 GLN X 165 REMARK 465 VAL X 166 REMARK 465 LYS X 167 REMARK 465 THR X 168 REMARK 465 ASN X 169 REMARK 465 ILE X 170 REMARK 465 GLN X 171 REMARK 465 GLN X 172 REMARK 465 ALA X 173 REMARK 465 VAL X 174 REMARK 465 ALA X 175 REMARK 465 ALA X 176 REMARK 465 THR X 372 REMARK 465 MET X 373 REMARK 465 ASP X 374 REMARK 465 ARG X 375 REMARK 465 GLY X 376 REMARK 465 SER X 377 REMARK 465 HIS X 378 REMARK 465 HIS X 379 REMARK 465 HIS X 380 REMARK 465 HIS X 381 REMARK 465 HIS X 382 REMARK 465 HIS X 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU X 86 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD CSO X 336 O HOH X 1038 1.42 REMARK 500 OD1 ASP X 203 O HOH X 1178 1.79 REMARK 500 O HOH X 1154 O HOH X 1288 2.00 REMARK 500 OE1 GLN X 251 O HOH X 1288 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 1233 O HOH X 1272 4557 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET X 335 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE X 260 -159.77 -123.73 REMARK 500 PHE X 284 164.36 71.47 REMARK 500 ASN X 297 -103.50 66.99 REMARK 500 CYS X 341 -70.01 -138.79 REMARK 500 TYR X 344 32.66 -88.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU X 130 OE2 REMARK 620 2 ASN X 293 O 93.2 REMARK 620 3 GLY X 296 O 93.8 86.8 REMARK 620 4 ALA X 298 O 86.9 173.2 86.4 REMARK 620 5 GLU X 300 OE2 95.5 82.1 165.9 104.6 REMARK 620 6 HOH X1012 O 160.8 104.9 80.7 74.4 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN X 259 OD1 REMARK 620 2 ILE X 260 O 99.3 REMARK 620 3 ASP X 273 OD2 87.0 75.7 REMARK 620 4 ASP X 273 OD1 94.6 126.1 53.2 REMARK 620 5 PHE X 275 O 91.3 152.2 130.8 78.0 REMARK 620 6 HOH X1006 O 91.0 72.5 147.4 159.1 81.8 REMARK 620 7 HOH X1016 O 175.0 85.6 95.5 83.5 83.8 89.2 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y1E RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NAG REMARK 900 RELATED ID: 1Y1G RELATED DB: PDB REMARK 900 THE SAME PROTEIN, DOUBLE SULFONIC ACID FORM REMARK 900 RELATED ID: 1Y1H RELATED DB: PDB REMARK 900 THE SAME PROTEIN, OXIDISED CYS REFINED AS HYDROPEROXIDE REMARK 900 RELATED ID: 1Y1I RELATED DB: PDB REMARK 900 THE SAME PROTEIN, REDUCED FORM REMARK 900 RELATED ID: 1Y1J RELATED DB: PDB REMARK 900 THE SAME PROTEIN, SULFONIC ACID/DESULFURATED FORM DBREF 1Y1F X 73 374 GB 30840149 AAO34683 73 374 SEQADV 1Y1F CSO X 336 GB 30840149 CYS 336 MODIFIED RESIDUE SEQADV 1Y1F ARG X 375 GB 30840149 EXPRESSION TAG SEQADV 1Y1F GLY X 376 GB 30840149 EXPRESSION TAG SEQADV 1Y1F SER X 377 GB 30840149 EXPRESSION TAG SEQADV 1Y1F HIS X 378 GB 30840149 EXPRESSION TAG SEQADV 1Y1F HIS X 379 GB 30840149 EXPRESSION TAG SEQADV 1Y1F HIS X 380 GB 30840149 EXPRESSION TAG SEQADV 1Y1F HIS X 381 GB 30840149 EXPRESSION TAG SEQADV 1Y1F HIS X 382 GB 30840149 EXPRESSION TAG SEQADV 1Y1F HIS X 383 GB 30840149 EXPRESSION TAG SEQRES 1 X 311 GLU ALA ASN ALA PRO GLY PRO VAL PRO GLY GLU ARG GLN SEQRES 2 X 311 LEU ALA HIS SER LYS MET VAL PRO ILE PRO ALA GLY VAL SEQRES 3 X 311 PHE THR MET GLY THR ASP ASP PRO GLN ILE LYS GLN ASP SEQRES 4 X 311 GLY GLU ALA PRO ALA ARG ARG VAL THR ILE ASP ALA PHE SEQRES 5 X 311 TYR MET ASP ALA TYR GLU VAL SER ASN THR GLU PHE GLU SEQRES 6 X 311 LYS PHE VAL ASN SER THR GLY TYR LEU THR GLU ALA GLU SEQRES 7 X 311 LYS PHE GLY ASP SER PHE VAL PHE GLU GLY MET LEU SER SEQRES 8 X 311 GLU GLN VAL LYS THR ASN ILE GLN GLN ALA VAL ALA ALA SEQRES 9 X 311 ALA PRO TRP TRP LEU PRO VAL LYS GLY ALA ASN TRP ARG SEQRES 10 X 311 HIS PRO GLU GLY PRO ASP SER THR ILE LEU HIS ARG PRO SEQRES 11 X 311 ASP HIS PRO VAL LEU HIS VAL SER TRP ASN ASP ALA VAL SEQRES 12 X 311 ALA TYR CYS THR TRP ALA GLY LYS ARG LEU PRO THR GLU SEQRES 13 X 311 ALA GLU TRP GLU TYR SER CYS ARG GLY GLY LEU HIS ASN SEQRES 14 X 311 ARG LEU PHE PRO TRP GLY ASN LYS LEU GLN PRO LYS GLY SEQRES 15 X 311 GLN HIS TYR ALA ASN ILE TRP GLN GLY GLU PHE PRO VAL SEQRES 16 X 311 THR ASN THR GLY GLU ASP GLY PHE GLN GLY THR ALA PRO SEQRES 17 X 311 VAL ASP ALA PHE PRO PRO ASN GLY TYR GLY LEU TYR ASN SEQRES 18 X 311 ILE VAL GLY ASN ALA TRP GLU TRP THR SER ASP TRP TRP SEQRES 19 X 311 THR VAL HIS HIS SER VAL GLU GLU THR LEU ASN PRO LYS SEQRES 20 X 311 GLY PRO PRO SER GLY LYS ASP ARG VAL LYS LYS GLY GLY SEQRES 21 X 311 SER TYR MET CSO HIS ARG SER TYR CYS TYR ARG TYR ARG SEQRES 22 X 311 CYS ALA ALA ARG SER GLN ASN THR PRO ASP SER SER ALA SEQRES 23 X 311 SER ASN LEU GLY PHE ARG CYS ALA ALA ASP ARG LEU PRO SEQRES 24 X 311 THR MET ASP ARG GLY SER HIS HIS HIS HIS HIS HIS MODRES 1Y1F ASN X 141 ASN GLYCOSYLATION SITE MODRES 1Y1F CSO X 336 CYS S-HYDROXYCYSTEINE HET CSO X 336 9 HET NAG A 1 14 HET NAG A 2 14 HET CA X1001 1 HET CA X1002 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *429(H2 O) HELIX 1 1 ILE X 108 GLY X 112 5 5 HELIX 2 2 SER X 132 GLY X 144 1 13 HELIX 3 3 THR X 147 GLY X 153 1 7 HELIX 4 4 GLY X 160 LEU X 162 5 3 HELIX 5 5 SER X 210 ALA X 221 1 12 HELIX 6 6 THR X 227 GLY X 237 1 11 HELIX 7 7 GLN X 251 GLN X 255 5 5 SHEET 1 A 3 MET X 91 ILE X 94 0 SHEET 2 A 3 PHE X 124 ASP X 127 -1 O PHE X 124 N ILE X 94 SHEET 3 A 3 ALA X 366 ALA X 367 -1 O ALA X 367 N TYR X 125 SHEET 1 B 3 GLY X 97 MET X 101 0 SHEET 2 B 3 ARG X 117 ILE X 121 -1 O VAL X 119 N PHE X 99 SHEET 3 B 3 THR X 315 LEU X 316 1 O THR X 315 N THR X 120 SHEET 1 C 2 ASP X 154 PHE X 158 0 SHEET 2 C 2 TRP X 180 LYS X 184 -1 O LEU X 181 N VAL X 157 SHEET 1 D 4 SER X 350 ASN X 352 0 SHEET 2 D 4 ARG X 327 LYS X 330 -1 N ARG X 327 O ASN X 352 SHEET 3 D 4 TRP X 299 TRP X 305 -1 N THR X 302 O VAL X 328 SHEET 4 D 4 LEU X 361 GLY X 362 1 O GLY X 362 N TRP X 299 SSBOND 1 CYS X 218 CYS X 365 1555 1555 2.06 SSBOND 2 CYS X 235 CYS X 346 1555 1555 2.06 LINK ND2 ASN X 141 C1 NAG A 1 1555 1555 1.46 LINK C MET X 335 N CSO X 336 1555 1555 1.32 LINK C CSO X 336 N HIS X 337 1555 1555 1.33 LINK SG ACSO X 336 SG CYS X 341 1555 1555 2.04 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK OE2 GLU X 130 CA CA X1001 1555 1555 2.26 LINK OD1 ASN X 259 CA CA X1002 1555 1555 2.33 LINK O ILE X 260 CA CA X1002 1555 1555 2.31 LINK OD2 ASP X 273 CA CA X1002 1555 1555 2.41 LINK OD1 ASP X 273 CA CA X1002 1555 1555 2.49 LINK O PHE X 275 CA CA X1002 1555 1555 2.27 LINK O ASN X 293 CA CA X1001 1555 1555 2.30 LINK O GLY X 296 CA CA X1001 1555 1555 2.44 LINK O ALA X 298 CA CA X1001 1555 1555 2.38 LINK OE2 GLU X 300 CA CA X1001 1555 1555 2.34 LINK CA CA X1001 O HOH X1012 1555 1555 2.38 LINK CA CA X1002 O HOH X1006 1555 1555 2.47 LINK CA CA X1002 O HOH X1016 1555 1555 2.40 CISPEP 1 ALA X 114 PRO X 115 0 -3.33 CISPEP 2 PHE X 265 PRO X 266 0 -2.40 CRYST1 61.754 109.692 43.411 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023036 0.00000