PDB Short entry for 1Y24
HEADER    HYDROLASE                               19-NOV-04   1Y24              
TITLE     HOMOLOGY MODEL FOR HUMAN ALPHA-L-IDURONIDASE                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ALPHA-L-IDURONIDASE;                                       
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 36-522;                                           
COMPND   5 EC: 3.2.1.76                                                         
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN                                               
KEYWDS    HOMOLOGY MODEL                                                        
EXPDTA    THEORETICAL MODEL                                                     
AUTHOR    B.P.REMPEL,L.A.CLARKE,S.G.WITHERS                                     
REVDAT   1   10-MAY-05 1Y24    0                                                
JRNL        AUTH   B.P.REMPEL,L.A.CLARKE,S.G.WITHERS                            
JRNL        TITL   A HOMOLOGY MODEL FOR HUMAN ALPHA-L-IDURONIDASE:              
JRNL        TITL 2 INSIGHTS INTO HUMAN DISEASE.                                 
JRNL        REF    MOL.GENET.METAB.              V.  85    28 2005              
JRNL        REFN                US ISSN 1096-7192                               
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : SWISS-PDBVIEWER 3.70B15, HTTP://WWW.EXPASY.ORG/      
REMARK   3                 SPDBV/                                               
REMARK   3   AUTHORS     : N.GUEX,A.DIEMAND,M.C.PEITSCH,T.SCHWEDE               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1Y24 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998                       
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-2004.                
REMARK 100 THE RCSB ID CODE IS RCSB031019.                                      
REMARK 220                                                                      
REMARK 220 EXPERIMENTAL DETAILS                                                 
REMARK 220  EXPERIMENT TYPE                : THEORETICAL MODELLING              
REMARK 220                                                                      
REMARK 220 REMARK: NULL                                                         
REMARK 225                                                                      
REMARK 225 THEORETICAL MODEL                                                    
REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE.           
REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND                
REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE                   
REMARK 225 RECORDS ARE MEANINGLESS.                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    TYR A  64   N   -  CA  -  C   ANGL. DEV. = 14.7 DEGREES           
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A  64      -48.29     58.10                                   
REMARK 500    PHE A 130      145.79     64.31                                   
REMARK 500    HIS A 139      140.73     80.26                                   
REMARK 500    PHE A 143      165.17     68.27                                   
REMARK 500    TRP A 180      146.15     68.58                                   
REMARK 500    HIS A 226      -30.14     79.60                                   
REMARK 500    GLU A 398      -39.75     69.53                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 ARG A   45    PHE A   46                  140.24                     
REMARK 500 PHE A  130    GLU A  131                  149.94                     
DBREF  1Y24 A   36   522  UNP    P35475   IDUA_HUMAN      36    522             
SEQRES   1 A  487  ALA ALA ARG ALA LEU TRP PRO LEU ARG ARG PHE TRP ARG          
SEQRES   2 A  487  SER THR GLY PHE CYS PRO PRO LEU PRO HIS SER GLN ALA          
SEQRES   3 A  487  ASP GLN TYR VAL LEU SER TRP ASP GLN GLN LEU ASN LEU          
SEQRES   4 A  487  ALA TYR VAL GLY ALA VAL PRO HIS ARG GLY ILE LYS GLN          
SEQRES   5 A  487  VAL ARG THR HIS TRP LEU LEU GLU LEU VAL THR THR ARG          
SEQRES   6 A  487  GLY SER THR GLY ARG GLY LEU SER TYR ASN PHE THR HIS          
SEQRES   7 A  487  LEU ASP GLY TYR LEU ASP LEU LEU ARG GLU ASN GLN LEU          
SEQRES   8 A  487  LEU PRO GLY PHE GLU LEU MET GLY SER ALA SER GLY HIS          
SEQRES   9 A  487  PHE THR ASP PHE GLU ASP LYS GLN GLN VAL PHE GLU TRP          
SEQRES  10 A  487  LYS ASP LEU VAL SER SER LEU ALA ARG ARG TYR ILE GLY          
SEQRES  11 A  487  ARG TYR GLY LEU ALA HIS VAL SER LYS TRP ASN PHE GLU          
SEQRES  12 A  487  THR TRP ASN GLU PRO ASP HIS HIS ASP PHE ASP ASN VAL          
SEQRES  13 A  487  SER MET THR MET GLN GLY PHE LEU ASN TYR TYR ASP ALA          
SEQRES  14 A  487  CYS SER GLU GLY LEU ARG ALA ALA SER PRO ALA LEU ARG          
SEQRES  15 A  487  LEU GLY GLY PRO GLY ASP SER PHE HIS THR PRO PRO ARG          
SEQRES  16 A  487  SER PRO LEU SER TRP GLY LEU LEU ARG HIS CYS HIS ASP          
SEQRES  17 A  487  GLY THR ASN PHE PHE THR GLY GLU ALA GLY VAL ARG LEU          
SEQRES  18 A  487  ASP TYR ILE SER LEU HIS ARG LYS GLY ALA ARG SER SER          
SEQRES  19 A  487  ILE SER ILE LEU GLU GLN GLU LYS VAL VAL ALA GLN GLN          
SEQRES  20 A  487  ILE ARG GLN LEU PHE PRO LYS PHE ALA ASP THR PRO ILE          
SEQRES  21 A  487  TYR ASN ASP GLU ALA ASP PRO LEU VAL GLY TRP SER LEU          
SEQRES  22 A  487  PRO GLN PRO TRP ARG ALA ASP VAL THR TYR ALA ALA MET          
SEQRES  23 A  487  VAL VAL LYS VAL ILE ALA GLN HIS GLN ASN LEU LEU LEU          
SEQRES  24 A  487  ALA ASN THR THR SER ALA PHE PRO TYR ALA LEU LEU SER          
SEQRES  25 A  487  ASN ASP ASN ALA PHE LEU SER TYR HIS PRO HIS PRO PHE          
SEQRES  26 A  487  ALA GLN ARG THR LEU THR ALA ARG PHE GLN VAL ASN ASN          
SEQRES  27 A  487  THR ARG PRO PRO HIS VAL GLN LEU LEU ARG LYS PRO VAL          
SEQRES  28 A  487  LEU THR ALA MET GLY LEU LEU ALA LEU LEU ASP GLU GLU          
SEQRES  29 A  487  GLN LEU TRP ALA GLU VAL SER GLN ALA GLY THR VAL LEU          
SEQRES  30 A  487  ASP SER ASN HIS THR VAL GLY VAL LEU ALA SER ALA HIS          
SEQRES  31 A  487  ARG PRO GLN GLY PRO ALA ASP ALA TRP ARG ALA ALA VAL          
SEQRES  32 A  487  LEU ILE TYR ALA SER ASP ASP THR ARG ALA HIS PRO ASN          
SEQRES  33 A  487  ARG SER VAL ALA VAL THR LEU ARG LEU ARG GLY VAL PRO          
SEQRES  34 A  487  PRO GLY PRO GLY LEU VAL TYR VAL THR ARG TYR LEU ASP          
SEQRES  35 A  487  ASN GLY LEU CYS SER PRO ASP GLY GLU TRP ARG ARG LEU          
SEQRES  36 A  487  GLY ARG PRO VAL PHE PRO THR ALA GLU GLN PHE ARG ARG          
SEQRES  37 A  487  MET ARG ALA ALA GLU ASP PRO VAL ALA ALA ALA PRO ARG          
SEQRES  38 A  487  PRO LEU PRO ALA GLY GLY                                      
HELIX    1   1 TYR A   64  VAL A   77  1                                  14    
HELIX    2   2 GLU A   95  THR A   99  5                                   5    
HELIX    3   3 PHE A  111  ASN A  124  1                                  14    
HELIX    4   4 VAL A  156  GLY A  168  1                                  13    
HELIX    5   5 GLY A  168  LYS A  174  1                                   7    
HELIX    6   6 ASP A  189  SER A  192  5                                   4    
HELIX    7   7 MET A  193  ALA A  212  1                                  20    
HELIX    8   8 PRO A  229  CYS A  241  1                                  13    
HELIX    9   9 ILE A  272  GLN A  285  1                                  14    
HELIX   10  10 ALA A  314  VAL A  325  1                                  12    
HELIX   11  11 ILE A  326  ASN A  331  5                                   6    
HELIX   12  12 ARG A  368  ARG A  375  1                                   8    
HELIX   13  13 PRO A  376  VAL A  379  5                                   4    
HELIX   14  14 SER A  443  HIS A  449  1                                   7    
HELIX   15  15 LEU A  458  VAL A  463  1                                   6    
HELIX   16  16 PRO A  464  LEU A  469  1                                   6    
SHEET    1   A 3 ALA A  37  ALA A  39  0                                        
SHEET    2   A 3 THR A 417  ALA A 424  1  O  VAL A 420   N  ALA A  37           
SHEET    3   A 3 ASP A 484  GLY A 491 -1  O  GLY A 491   N  THR A 417           
SHEET    1   B 2 GLN A  87  VAL A  88  0                                        
SHEET    2   B 2 LEU A 127  PRO A 128  1  O  LEU A 127   N  VAL A  88           
SHEET    1   C 2 GLU A 131  LEU A 132  0                                        
SHEET    2   C 2 PHE A 177  GLU A 178  1  O  GLU A 178   N  GLU A 131           
SHEET    1   D 2 THR A 141  ASP A 142  0                                        
SHEET    2   D 2 GLN A 147  GLN A 148 -1  O  GLN A 147   N  ASP A 142           
SHEET    1   E 4 GLY A 220  SER A 224  0                                        
SHEET    2   E 4 PHE A 248  GLY A 253  1  O  GLU A 251   N  ASP A 223           
SHEET    3   E 4 ILE A 295  ASP A 301  1  O  TYR A 296   N  PHE A 248           
SHEET    4   E 4 LEU A 333  ASN A 336  1  O  LEU A 333   N  ASN A 297           
SHEET    1   F 2 SER A 260  LEU A 261  0                                        
SHEET    2   F 2 LYS A 264  GLY A 265 -1  O  LYS A 264   N  LEU A 261           
SHEET    1   G 2 PHE A 360  ALA A 361  0                                        
SHEET    2   G 2 LEU A 365  THR A 366 -1  O  LEU A 365   N  ALA A 361           
SHEET    1   H 6 LEU A 382  LEU A 387  0                                        
SHEET    2   H 6 MET A 390  ALA A 394 -1  O  MET A 390   N  LEU A 387           
SHEET    3   H 6 GLN A 400  VAL A 405 -1  O  ALA A 403   N  GLY A 391           
SHEET    4   H 6 PRO A 496  ARG A 503 -1  O  GLU A 499   N  TRP A 402           
SHEET    5   H 6 PRO A 430  ALA A 436 -1  N  ALA A 431   O  ARG A 502           
SHEET    6   H 6 VAL A 472  LEU A 476 -1  O  ARG A 474   N  TRP A 434           
CISPEP   1 GLN A   63    TYR A   64          0       -14.91                     
CISPEP   2 ILE A   85    LYS A   86          0       -15.50                     
CISPEP   3 LEU A  216    ARG A  217          0        -7.00                     
CISPEP   4 GLY A  220    PRO A  221          0        -7.93                     
CISPEP   5 THR A  337    THR A  338          0        -0.17                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000