PDB Short entry for 1YA5 HEADER STRUCTURAL PROTEIN 17-DEC-04 1YA5 TITLE CRYSTAL STRUCTURE OF THE TITIN DOMAINS Z1Z2 IN COMPLEX WITH TELETHONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: N2B-TITIN ISOFORM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAINS Z1Z2, RESIDUES 1-196; COMPND 5 SYNONYM: TTN PROTEIN; TITIN ISOFORM NOVEX-2; TITIN ISOFORM NOVEX-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TELETHONIN; COMPND 9 CHAIN: T; COMPND 10 FRAGMENT: RESIDUES 1-90; COMPND 11 SYNONYM: TITIN CAP PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET6D (MODIFIED PET3A); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS TELETHONIN; T-CAP; IG-LIKE DOMAINS; Z1; Z2; TITIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.PINOTSIS,A.POPOV,P.ZOU,M.WILMANNS REVDAT 6 14-FEB-24 1YA5 1 REMARK REVDAT 5 20-OCT-21 1YA5 1 REMARK SEQADV REVDAT 4 13-JUL-11 1YA5 1 VERSN REVDAT 3 24-FEB-09 1YA5 1 VERSN REVDAT 2 24-JAN-06 1YA5 1 JRNL REVDAT 1 20-DEC-05 1YA5 0 JRNL AUTH P.ZOU,N.PINOTSIS,S.LANGE,Y.H.SONG,A.POPOV,I.MAVRIDIS, JRNL AUTH 2 O.M.MAYANS,M.GAUTEL,M.WILMANNS JRNL TITL PALINDROMIC ASSEMBLY OF THE GIANT MUSCLE PROTEIN TITIN IN JRNL TITL 2 THE SARCOMERIC Z-DISK JRNL REF NATURE V. 439 229 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16407954 JRNL DOI 10.1038/NATURE04343 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.PINOTSIS REMARK 1 TITL CRYSTAL STRUCTURE OF THE TITIN DOMAINS Z1Z2 IN COMPLEX WITH REMARK 1 TITL 2 TELETHONIN REMARK 1 REF THESIS 2003 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.39000 REMARK 3 B22 (A**2) : 9.26000 REMARK 3 B33 (A**2) : -5.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.384 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3805 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5182 ; 1.370 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 7.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.391 ;24.458 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;23.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;22.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2873 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1788 ; 0.291 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2564 ; 0.337 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 227 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.354 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2453 ; 3.017 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3925 ; 3.741 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1479 ; 4.409 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1257 ; 5.608 ; 7.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1117 16.4224 53.7891 REMARK 3 T TENSOR REMARK 3 T11: -0.0928 T22: -0.2291 REMARK 3 T33: -0.0494 T12: 0.0404 REMARK 3 T13: 0.0029 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.5495 L22: 1.1252 REMARK 3 L33: 6.7431 L12: 0.0077 REMARK 3 L13: -0.1498 L23: -2.1291 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.0100 S13: -0.0565 REMARK 3 S21: 0.2705 S22: 0.0750 S23: -0.0441 REMARK 3 S31: -0.7208 S32: -0.6105 S33: 0.0578 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2560 18.9306 36.1653 REMARK 3 T TENSOR REMARK 3 T11: -0.2038 T22: -0.1972 REMARK 3 T33: 0.0091 T12: 0.0092 REMARK 3 T13: 0.0216 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.7819 L22: 0.6551 REMARK 3 L33: 12.2502 L12: 0.1606 REMARK 3 L13: -0.3354 L23: 0.0607 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.0955 S13: -0.0240 REMARK 3 S21: 0.0589 S22: 0.0176 S23: -0.0561 REMARK 3 S31: -0.3114 S32: 0.9718 S33: -0.0514 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 1 T 89 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7901 17.7215 43.1079 REMARK 3 T TENSOR REMARK 3 T11: -0.1005 T22: -0.3096 REMARK 3 T33: -0.0075 T12: 0.0065 REMARK 3 T13: -0.0006 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.0305 L22: 0.5410 REMARK 3 L33: 9.7425 L12: 0.0192 REMARK 3 L13: -0.2533 L23: -0.7263 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: -0.1735 S13: -0.0492 REMARK 3 S21: 0.0987 S22: 0.0428 S23: -0.0819 REMARK 3 S31: 0.1669 S32: -0.0083 S33: -0.1200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.45 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8117 REMARK 200 MONOCHROMATOR : GE SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.445 REMARK 200 RESOLUTION RANGE LOW (A) : 14.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.45, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.16300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.29200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 121.29200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.16300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 199 REMARK 465 GLU A 200 REMARK 465 PHE A 201 REMARK 465 ARG B 198 REMARK 465 GLU B 199 REMARK 465 GLU B 200 REMARK 465 PHE B 201 REMARK 465 PRO T 90 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 77 NE CZ NH1 NH2 REMARK 480 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 56 127.26 -173.20 REMARK 500 THR B 2 152.49 157.02 REMARK 500 VAL B 34 132.51 -34.78 REMARK 500 ASP B 42 57.15 38.76 REMARK 500 LEU B 51 71.06 -156.09 REMARK 500 ASP B 140 43.90 35.55 REMARK 500 GLN B 145 41.65 -89.82 REMARK 500 SER B 146 82.58 42.85 REMARK 500 LEU B 148 -148.12 48.49 REMARK 500 ASP B 149 19.06 -56.26 REMARK 500 GLU B 196 -127.91 -117.45 REMARK 500 THR T 3 140.29 -37.46 REMARK 500 ARG T 76 -134.36 -113.89 REMARK 500 ARG T 76 -131.81 -110.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 145 SER B 146 147.15 REMARK 500 GLU B 196 THR B 197 -133.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 T 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 T 605 DBREF 1YA5 A 1 196 UNP Q6PJP0 Q6PJP0_HUMAN 1 196 DBREF 1YA5 B 1 196 UNP Q6PJP0 Q6PJP0_HUMAN 1 196 DBREF 1YA5 T 1 90 UNP O15273 TELT_HUMAN 1 90 SEQADV 1YA5 THR A 197 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 ARG A 198 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 GLU A 199 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 GLU A 200 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 PHE A 201 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 THR B 197 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 ARG B 198 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 GLU B 199 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 GLU B 200 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 PHE B 201 UNP Q6PJP0 CLONING ARTIFACT SEQADV 1YA5 SER T 8 UNP O15273 CYS 8 ENGINEERED MUTATION SEQADV 1YA5 SER T 15 UNP O15273 CYS 15 ENGINEERED MUTATION SEQADV 1YA5 SER T 38 UNP O15273 CYS 38 ENGINEERED MUTATION SEQADV 1YA5 SER T 57 UNP O15273 CYS 57 ENGINEERED MUTATION SEQRES 1 A 201 MET THR THR GLN ALA PRO THR PHE THR GLN PRO LEU GLN SEQRES 2 A 201 SER VAL VAL VAL LEU GLU GLY SER THR ALA THR PHE GLU SEQRES 3 A 201 ALA HIS ILE SER GLY PHE PRO VAL PRO GLU VAL SER TRP SEQRES 4 A 201 PHE ARG ASP GLY GLN VAL ILE SER THR SER THR LEU PRO SEQRES 5 A 201 GLY VAL GLN ILE SER PHE SER ASP GLY ARG ALA LYS LEU SEQRES 6 A 201 THR ILE PRO ALA VAL THR LYS ALA ASN SER GLY ARG TYR SEQRES 7 A 201 SER LEU LYS ALA THR ASN GLY SER GLY GLN ALA THR SER SEQRES 8 A 201 THR ALA GLU LEU LEU VAL LYS ALA GLU THR ALA PRO PRO SEQRES 9 A 201 ASN PHE VAL GLN ARG LEU GLN SER MET THR VAL ARG GLN SEQRES 10 A 201 GLY SER GLN VAL ARG LEU GLN VAL ARG VAL THR GLY ILE SEQRES 11 A 201 PRO THR PRO VAL VAL LYS PHE TYR ARG ASP GLY ALA GLU SEQRES 12 A 201 ILE GLN SER SER LEU ASP PHE GLN ILE SER GLN GLU GLY SEQRES 13 A 201 ASP LEU TYR SER LEU LEU ILE ALA GLU ALA TYR PRO GLU SEQRES 14 A 201 ASP SER GLY THR TYR SER VAL ASN ALA THR ASN SER VAL SEQRES 15 A 201 GLY ARG ALA THR SER THR ALA GLU LEU LEU VAL GLN GLY SEQRES 16 A 201 GLU THR ARG GLU GLU PHE SEQRES 1 B 201 MET THR THR GLN ALA PRO THR PHE THR GLN PRO LEU GLN SEQRES 2 B 201 SER VAL VAL VAL LEU GLU GLY SER THR ALA THR PHE GLU SEQRES 3 B 201 ALA HIS ILE SER GLY PHE PRO VAL PRO GLU VAL SER TRP SEQRES 4 B 201 PHE ARG ASP GLY GLN VAL ILE SER THR SER THR LEU PRO SEQRES 5 B 201 GLY VAL GLN ILE SER PHE SER ASP GLY ARG ALA LYS LEU SEQRES 6 B 201 THR ILE PRO ALA VAL THR LYS ALA ASN SER GLY ARG TYR SEQRES 7 B 201 SER LEU LYS ALA THR ASN GLY SER GLY GLN ALA THR SER SEQRES 8 B 201 THR ALA GLU LEU LEU VAL LYS ALA GLU THR ALA PRO PRO SEQRES 9 B 201 ASN PHE VAL GLN ARG LEU GLN SER MET THR VAL ARG GLN SEQRES 10 B 201 GLY SER GLN VAL ARG LEU GLN VAL ARG VAL THR GLY ILE SEQRES 11 B 201 PRO THR PRO VAL VAL LYS PHE TYR ARG ASP GLY ALA GLU SEQRES 12 B 201 ILE GLN SER SER LEU ASP PHE GLN ILE SER GLN GLU GLY SEQRES 13 B 201 ASP LEU TYR SER LEU LEU ILE ALA GLU ALA TYR PRO GLU SEQRES 14 B 201 ASP SER GLY THR TYR SER VAL ASN ALA THR ASN SER VAL SEQRES 15 B 201 GLY ARG ALA THR SER THR ALA GLU LEU LEU VAL GLN GLY SEQRES 16 B 201 GLU THR ARG GLU GLU PHE SEQRES 1 T 90 MET ALA THR SER GLU LEU SER SER GLU VAL SER GLU GLU SEQRES 2 T 90 ASN SER GLU ARG ARG GLU ALA PHE TRP ALA GLU TRP LYS SEQRES 3 T 90 ASP LEU THR LEU SER THR ARG PRO GLU GLU GLY SER SER SEQRES 4 T 90 LEU HIS GLU GLU ASP THR GLN ARG HIS GLU THR TYR HIS SEQRES 5 T 90 GLN GLN GLY GLN SER GLN VAL LEU VAL GLN ARG SER PRO SEQRES 6 T 90 TRP LEU MET MET ARG MET GLY ILE LEU GLY ARG GLY LEU SEQRES 7 T 90 GLN GLU TYR GLN LEU PRO TYR GLN ARG VAL LEU PRO HET SO4 A 601 5 HET SO4 B 602 5 HET SO4 B 604 5 HET SO4 T 603 5 HET SO4 T 605 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *179(H2 O) HELIX 1 1 THR A 71 SER A 75 5 5 HELIX 2 2 TYR A 167 SER A 171 5 5 HELIX 3 3 THR B 71 SER B 75 5 5 HELIX 4 4 TYR B 167 SER B 171 5 5 HELIX 5 5 PRO T 34 GLY T 37 5 4 SHEET 1 A 4 GLN A 4 GLN A 10 0 SHEET 2 A 4 ALA A 23 PHE A 32 -1 N HIS A 28 O GLN A 10 SHEET 3 A 4 ARG A 62 ILE A 67 -1 N ALA A 63 O ALA A 27 SHEET 4 A 4 GLN A 55 SER A 59 -1 O GLN A 55 N THR A 66 SHEET 1 B20 GLN A 44 VAL A 45 0 SHEET 2 B20 GLU A 36 ARG A 41 -1 N ARG A 41 O GLN A 44 SHEET 3 B20 GLY A 76 ASN A 84 1 O SER A 79 N PHE A 40 SHEET 4 B20 GLY A 87 LYS A 98 -1 O GLY A 87 N ASN A 84 SHEET 5 B20 VAL A 15 LEU A 18 1 O VAL A 15 N LEU A 96 SHEET 6 B20 GLY A 87 LYS A 98 1 O GLU A 94 N VAL A 15 SHEET 7 B20 SER T 4 ASN T 14 -1 O GLU T 9 N THR A 92 SHEET 8 B20 GLU T 19 ARG T 33 -1 O GLU T 19 N ASN T 14 SHEET 9 B20 SER T 57 GLN T 62 -1 O SER T 57 N ARG T 33 SHEET 10 B20 MET T 68 ILE T 73 -1 O ARG T 70 N GLN T 62 SHEET 11 B20 LEU T 78 GLN T 82 -1 N GLN T 79 O MET T 71 SHEET 12 B20 MET T 68 ILE T 73 -1 O MET T 69 N TYR T 81 SHEET 13 B20 SER T 57 GLN T 62 -1 N LEU T 60 O GLY T 72 SHEET 14 B20 GLU T 19 ARG T 33 -1 N THR T 29 O VAL T 61 SHEET 15 B20 GLY B 183 GLN B 194 -1 N ARG B 184 O GLU T 24 SHEET 16 B20 MET B 113 ARG B 116 1 O MET B 113 N LEU B 192 SHEET 17 B20 GLY B 183 GLN B 194 1 O GLU B 190 N MET B 113 SHEET 18 B20 GLY B 172 ASN B 180 -1 O GLY B 172 N LEU B 191 SHEET 19 B20 VAL B 134 ARG B 139 -1 N VAL B 134 O THR B 179 SHEET 20 B20 ALA B 142 GLU B 143 -1 O ALA B 142 N ARG B 139 SHEET 1 C 4 ALA A 102 GLN A 108 0 SHEET 2 C 4 VAL A 121 ILE A 130 -1 O ARG A 126 N VAL A 107 SHEET 3 C 4 LEU A 158 ILE A 163 -1 N TYR A 159 O VAL A 125 SHEET 4 C 4 PHE A 150 GLU A 155 -1 O GLN A 151 N LEU A 162 SHEET 1 D14 ALA A 142 ILE A 144 0 SHEET 2 D14 VAL A 134 ARG A 139 -1 O PHE A 137 N ILE A 144 SHEET 3 D14 GLY A 172 ASN A 180 -1 O SER A 175 N TYR A 138 SHEET 4 D14 GLY A 183 VAL A 193 -1 O GLY A 183 N ASN A 180 SHEET 5 D14 MET A 113 VAL A 115 1 O MET A 113 N LEU A 192 SHEET 6 D14 GLY A 183 VAL A 193 1 O GLU A 190 N MET A 113 SHEET 7 D14 GLU T 49 GLY T 55 -1 O THR T 50 N THR A 188 SHEET 8 D14 SER T 39 ASP T 44 -1 O LEU T 40 N GLN T 53 SHEET 9 D14 GLY B 87 LYS B 98 -1 O GLN B 88 N GLU T 43 SHEET 10 D14 VAL B 15 LEU B 18 1 N VAL B 15 O GLU B 94 SHEET 11 D14 GLY B 87 LYS B 98 1 O GLU B 94 N VAL B 15 SHEET 12 D14 GLY B 76 ASN B 84 -1 O GLY B 76 N LEU B 95 SHEET 13 D14 GLU B 36 ARG B 41 -1 O GLU B 36 N THR B 83 SHEET 14 D14 GLN B 44 VAL B 45 -1 O GLN B 44 N ARG B 41 SHEET 1 E 2 PHE B 8 GLN B 10 0 SHEET 2 E 2 HIS B 28 ILE B 29 -1 O HIS B 28 N THR B 9 SHEET 1 F 3 ALA B 23 PHE B 25 0 SHEET 2 F 3 ARG B 62 ILE B 67 -1 O LEU B 65 N PHE B 25 SHEET 3 F 3 GLN B 55 SER B 59 -1 N GLN B 55 O THR B 66 SHEET 1 G 4 ALA B 102 GLN B 108 0 SHEET 2 G 4 VAL B 121 ILE B 130 -1 O ARG B 126 N VAL B 107 SHEET 3 G 4 LEU B 158 ILE B 163 -1 N TYR B 159 O VAL B 125 SHEET 4 G 4 GLN B 151 GLU B 155 -1 O GLN B 151 N LEU B 162 CISPEP 1 PHE A 32 PRO A 33 0 -2.98 CISPEP 2 ILE A 130 PRO A 131 0 0.37 CISPEP 3 PHE B 32 PRO B 33 0 -1.26 CISPEP 4 ILE B 130 PRO B 131 0 -8.37 CISPEP 5 LEU T 83 PRO T 84 0 -11.42 SITE 1 AC1 4 LYS A 72 LYS A 98 ALA A 99 HOH A 666 SITE 1 AC2 6 LYS B 72 VAL B 97 LYS B 98 ALA B 99 SITE 2 AC2 6 HOH B 606 HOH B 676 SITE 1 AC3 1 ARG T 33 SITE 1 AC4 4 GLN B 117 GLY B 118 TYR B 167 ALA T 20 SITE 1 AC5 4 PRO T 34 GLU T 35 GLU T 36 GLN T 56 CRYST1 46.326 63.213 242.584 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004122 0.00000