PDB Short entry for 1YB1 HEADER OXIDOREDUCTASE 18-DEC-04 1YB1 TITLE CRYSTAL STRUCTURE OF HUMAN 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE TITLE 2 XI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE XI; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.62; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHRS8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P11 (PET11 DERIVATIVE) KEYWDS SHORT CHAIN DEHYDROGENASE, HYDROXYSTEROID DEHYDROGENASE, HUMAN, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LUKACIK,G.BUNKOCZI,K.KAVANAGH,S.NG,F.VON DELFT,J.BRAY,A.EDWARDS, AUTHOR 2 C.ARROWSMITH,M.SUNDSTROM,U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 7 03-APR-24 1YB1 1 REMARK REVDAT 6 14-FEB-24 1YB1 1 REMARK SEQADV REVDAT 5 31-JAN-18 1YB1 1 AUTHOR JRNL REVDAT 4 03-JUL-13 1YB1 1 HET HETATM HETNAM REVDAT 3 13-JUL-11 1YB1 1 VERSN REVDAT 2 24-FEB-09 1YB1 1 VERSN REVDAT 1 28-DEC-04 1YB1 0 JRNL AUTH P.LUKACIK,G.BUNKOCZI,K.KAVANAGH,S.NG,F.VON DELFT,J.BRAY, JRNL AUTH 2 A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN 17-BETA-HYDROXYSTEROID JRNL TITL 2 DEHYDROGENASE TYPE XI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3651 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3856 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3620 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5270 ; 1.344 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8416 ; 0.792 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 6.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.691 ;24.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;11.136 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 652 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4188 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 765 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3473 ; 0.158 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1929 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2207 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2603 ; 1.765 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1001 ; 0.420 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3968 ; 2.621 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1532 ; 4.208 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1291 ; 5.858 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4091 -19.7263 11.1586 REMARK 3 T TENSOR REMARK 3 T11: -0.1085 T22: -0.0598 REMARK 3 T33: -0.0478 T12: 0.0279 REMARK 3 T13: -0.0054 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.8286 L22: 0.9428 REMARK 3 L33: 1.2207 L12: -0.0806 REMARK 3 L13: 0.0411 L23: 0.1916 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.1537 S13: 0.1114 REMARK 3 S21: -0.0979 S22: -0.0528 S23: 0.1042 REMARK 3 S31: -0.0207 S32: -0.0687 S33: 0.0410 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2112 -42.9633 29.3189 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: -0.0853 REMARK 3 T33: -0.0118 T12: 0.0122 REMARK 3 T13: 0.0009 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.9079 L22: 0.8754 REMARK 3 L33: 0.8743 L12: 0.3959 REMARK 3 L13: 0.2486 L23: 0.4085 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: -0.0460 S13: -0.1794 REMARK 3 S21: 0.2086 S22: -0.0946 S23: -0.0276 REMARK 3 S31: 0.3428 S32: -0.0141 S33: -0.0362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 RESIDUAL DENSITY THAT IS LIKELY DUE TO AN ALTERNATE MAIN CHAIN REMARK 3 CONFORMATION OF RESIDUES 167-170 WAS NOT MODELLED. REMARK 4 REMARK 4 1YB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000031327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MR MODEL OBTAINED BY AUTOBUILDING INTO A REMARK 200 SELENOMETHIONINE SAD PHASED MAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CITRATE PH5, 2.52M REMARK 280 AMMONIUM SULPHATE , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.00650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.46950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.46950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.50325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.46950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.46950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.50975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.46950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.46950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.50325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.46950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.46950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.50975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.00650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -280.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.00650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ARG A 13 REMARK 465 GLU A 14 REMARK 465 ASN A 15 REMARK 465 LEU A 16 REMARK 465 TYR A 17 REMARK 465 PHE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 HIS A 21 REMARK 465 MET A 22 REMARK 465 PRO A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 170 REMARK 465 PRO A 269 REMARK 465 GLU A 270 REMARK 465 GLY A 271 REMARK 465 SER A 272 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 LEU B 16 REMARK 465 TYR B 17 REMARK 465 PHE B 18 REMARK 465 GLN B 19 REMARK 465 GLY B 20 REMARK 465 HIS B 21 REMARK 465 MET B 22 REMARK 465 PRO B 23 REMARK 465 LYS B 24 REMARK 465 ALA B 169 REMARK 465 GLY B 170 REMARK 465 PRO B 269 REMARK 465 GLU B 270 REMARK 465 GLY B 271 REMARK 465 SER B 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 26 CD NE CZ NH1 NH2 REMARK 470 LYS A 57 CD CE NZ REMARK 470 LYS A 65 CE NZ REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LYS A 81 CE NZ REMARK 470 GLU A 93 CD OE1 OE2 REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 156 CE NZ REMARK 470 LYS A 222 CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 GLU A 265 CD OE1 OE2 REMARK 470 ARG A 266 NE CZ NH1 NH2 REMARK 470 LYS B 57 NZ REMARK 470 LYS B 65 CE NZ REMARK 470 GLU B 69 CD OE1 OE2 REMARK 470 GLU B 70 CD OE1 OE2 REMARK 470 LYS B 81 CE NZ REMARK 470 GLU B 93 CD OE1 OE2 REMARK 470 LYS B 134 CD CE NZ REMARK 470 LYS B 156 CE NZ REMARK 470 LYS B 222 CE NZ REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 ARG B 266 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 133 O HOH A 877 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 106 -54.35 -121.11 REMARK 500 THR A 121 -120.52 -106.00 REMARK 500 VAL A 140 -60.96 -128.93 REMARK 500 LYS B 55 33.92 70.72 REMARK 500 ILE B 106 -52.01 -120.60 REMARK 500 VAL B 140 -61.14 -130.55 REMARK 500 PHE B 220 -61.53 -103.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN AETIOCHOLANOLONE IS ALSO KNOWN AS ANDROSTERONE, 5- REMARK 600 ANDROSTAN-3-OL-17-ONE. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOI B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AOI A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 DBREF 1YB1 A 23 270 UNP Q8NBQ5 DHRS8_HUMAN 28 275 DBREF 1YB1 B 23 270 UNP Q8NBQ5 DHRS8_HUMAN 28 275 SEQADV 1YB1 GLY A 1 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER A 2 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER A 3 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 HIS A 4 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS A 5 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS A 6 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS A 7 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS A 8 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS A 9 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 SER A 10 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER A 11 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY A 12 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 ARG A 13 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLU A 14 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 ASN A 15 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 LEU A 16 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 TYR A 17 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 PHE A 18 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLN A 19 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY A 20 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 HIS A 21 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 MET A 22 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY A 271 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER A 272 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY B 1 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER B 2 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER B 3 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 HIS B 4 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS B 5 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS B 6 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS B 7 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS B 8 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 HIS B 9 UNP Q8NBQ5 EXPRESSION TAG SEQADV 1YB1 SER B 10 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER B 11 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY B 12 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 ARG B 13 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLU B 14 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 ASN B 15 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 LEU B 16 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 TYR B 17 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 PHE B 18 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLN B 19 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY B 20 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 HIS B 21 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 MET B 22 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 GLY B 271 UNP Q8NBQ5 CLONING ARTIFACT SEQADV 1YB1 SER B 272 UNP Q8NBQ5 CLONING ARTIFACT SEQRES 1 A 272 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY ARG SEQRES 2 A 272 GLU ASN LEU TYR PHE GLN GLY HIS MET PRO LYS ARG ARG SEQRES 3 A 272 LYS SER VAL THR GLY GLU ILE VAL LEU ILE THR GLY ALA SEQRES 4 A 272 GLY HIS GLY ILE GLY ARG LEU THR ALA TYR GLU PHE ALA SEQRES 5 A 272 LYS LEU LYS SER LYS LEU VAL LEU TRP ASP ILE ASN LYS SEQRES 6 A 272 HIS GLY LEU GLU GLU THR ALA ALA LYS CYS LYS GLY LEU SEQRES 7 A 272 GLY ALA LYS VAL HIS THR PHE VAL VAL ASP CYS SER ASN SEQRES 8 A 272 ARG GLU ASP ILE TYR SER SER ALA LYS LYS VAL LYS ALA SEQRES 9 A 272 GLU ILE GLY ASP VAL SER ILE LEU VAL ASN ASN ALA GLY SEQRES 10 A 272 VAL VAL TYR THR SER ASP LEU PHE ALA THR GLN ASP PRO SEQRES 11 A 272 GLN ILE GLU LYS THR PHE GLU VAL ASN VAL LEU ALA HIS SEQRES 12 A 272 PHE TRP THR THR LYS ALA PHE LEU PRO ALA MET THR LYS SEQRES 13 A 272 ASN ASN HIS GLY HIS ILE VAL THR VAL ALA SER ALA ALA SEQRES 14 A 272 GLY HIS VAL SER VAL PRO PHE LEU LEU ALA TYR CYS SER SEQRES 15 A 272 SER LYS PHE ALA ALA VAL GLY PHE HIS LYS THR LEU THR SEQRES 16 A 272 ASP GLU LEU ALA ALA LEU GLN ILE THR GLY VAL LYS THR SEQRES 17 A 272 THR CYS LEU CYS PRO ASN PHE VAL ASN THR GLY PHE ILE SEQRES 18 A 272 LYS ASN PRO SER THR SER LEU GLY PRO THR LEU GLU PRO SEQRES 19 A 272 GLU GLU VAL VAL ASN ARG LEU MET HIS GLY ILE LEU THR SEQRES 20 A 272 GLU GLN LYS MET ILE PHE ILE PRO SER SER ILE ALA PHE SEQRES 21 A 272 LEU THR THR LEU GLU ARG ILE LEU PRO GLU GLY SER SEQRES 1 B 272 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY ARG SEQRES 2 B 272 GLU ASN LEU TYR PHE GLN GLY HIS MET PRO LYS ARG ARG SEQRES 3 B 272 LYS SER VAL THR GLY GLU ILE VAL LEU ILE THR GLY ALA SEQRES 4 B 272 GLY HIS GLY ILE GLY ARG LEU THR ALA TYR GLU PHE ALA SEQRES 5 B 272 LYS LEU LYS SER LYS LEU VAL LEU TRP ASP ILE ASN LYS SEQRES 6 B 272 HIS GLY LEU GLU GLU THR ALA ALA LYS CYS LYS GLY LEU SEQRES 7 B 272 GLY ALA LYS VAL HIS THR PHE VAL VAL ASP CYS SER ASN SEQRES 8 B 272 ARG GLU ASP ILE TYR SER SER ALA LYS LYS VAL LYS ALA SEQRES 9 B 272 GLU ILE GLY ASP VAL SER ILE LEU VAL ASN ASN ALA GLY SEQRES 10 B 272 VAL VAL TYR THR SER ASP LEU PHE ALA THR GLN ASP PRO SEQRES 11 B 272 GLN ILE GLU LYS THR PHE GLU VAL ASN VAL LEU ALA HIS SEQRES 12 B 272 PHE TRP THR THR LYS ALA PHE LEU PRO ALA MET THR LYS SEQRES 13 B 272 ASN ASN HIS GLY HIS ILE VAL THR VAL ALA SER ALA ALA SEQRES 14 B 272 GLY HIS VAL SER VAL PRO PHE LEU LEU ALA TYR CYS SER SEQRES 15 B 272 SER LYS PHE ALA ALA VAL GLY PHE HIS LYS THR LEU THR SEQRES 16 B 272 ASP GLU LEU ALA ALA LEU GLN ILE THR GLY VAL LYS THR SEQRES 17 B 272 THR CYS LEU CYS PRO ASN PHE VAL ASN THR GLY PHE ILE SEQRES 18 B 272 LYS ASN PRO SER THR SER LEU GLY PRO THR LEU GLU PRO SEQRES 19 B 272 GLU GLU VAL VAL ASN ARG LEU MET HIS GLY ILE LEU THR SEQRES 20 B 272 GLU GLN LYS MET ILE PHE ILE PRO SER SER ILE ALA PHE SEQRES 21 B 272 LEU THR THR LEU GLU ARG ILE LEU PRO GLU GLY SER HET CL A 401 1 HET CL A 402 1 HET CL A 405 1 HET SO4 A 702 5 HET SO4 A 703 5 HET AOI A 602 21 HET CL B 403 1 HET CL B 404 1 HET CL B 406 1 HET AOI B 601 21 HET GOL B 501 6 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM AOI ANDROSTERONE HETNAM GOL GLYCEROL HETSYN AOI (3ALPHA,5BETA,8ALPHA,10ALPHA,13ALPHA,14BETA)-3- HETSYN 2 AOI HYDROXYANDROSTAN-17-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 6(CL 1-) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 AOI 2(C19 H30 O2) FORMUL 13 GOL C3 H8 O3 FORMUL 14 HOH *335(H2 O) HELIX 1 1 HIS A 41 LEU A 54 1 14 HELIX 2 2 ASN A 64 LEU A 78 1 15 HELIX 3 3 ASN A 91 ILE A 106 1 16 HELIX 4 4 LEU A 124 ALA A 126 5 3 HELIX 5 5 THR A 127 VAL A 140 1 14 HELIX 6 6 VAL A 140 ASN A 157 1 18 HELIX 7 7 SER A 173 LEU A 201 1 29 HELIX 8 8 ASN A 214 GLY A 219 1 6 HELIX 9 9 PRO A 224 GLY A 229 1 6 HELIX 10 10 GLU A 233 THR A 247 1 15 HELIX 11 11 ALA A 259 ARG A 266 1 8 HELIX 12 12 HIS B 41 LEU B 54 1 14 HELIX 13 13 ASN B 64 LEU B 78 1 15 HELIX 14 14 ASN B 91 ILE B 106 1 16 HELIX 15 15 GLN B 128 VAL B 140 1 13 HELIX 16 16 VAL B 140 ASN B 158 1 19 HELIX 17 17 SER B 173 LEU B 201 1 29 HELIX 18 18 ASN B 214 GLY B 219 1 6 HELIX 19 19 PRO B 224 GLY B 229 1 6 HELIX 20 20 GLU B 233 THR B 247 1 15 HELIX 21 21 ALA B 259 ARG B 266 1 8 SHEET 1 A 7 VAL A 82 VAL A 86 0 SHEET 2 A 7 LYS A 57 ASP A 62 1 N LEU A 60 O HIS A 83 SHEET 3 A 7 ILE A 33 THR A 37 1 N VAL A 34 O LYS A 57 SHEET 4 A 7 ILE A 111 ASN A 114 1 O VAL A 113 N LEU A 35 SHEET 5 A 7 GLY A 160 VAL A 165 1 O VAL A 163 N LEU A 112 SHEET 6 A 7 VAL A 206 PRO A 213 1 O LYS A 207 N GLY A 160 SHEET 7 A 7 MET A 251 ILE A 254 1 O ILE A 252 N CYS A 212 SHEET 1 B 7 VAL B 82 VAL B 86 0 SHEET 2 B 7 LYS B 57 ASP B 62 1 N LEU B 60 O HIS B 83 SHEET 3 B 7 ILE B 33 THR B 37 1 N VAL B 34 O VAL B 59 SHEET 4 B 7 ILE B 111 ASN B 114 1 O VAL B 113 N LEU B 35 SHEET 5 B 7 GLY B 160 VAL B 165 1 O VAL B 163 N LEU B 112 SHEET 6 B 7 VAL B 206 PRO B 213 1 O LYS B 207 N GLY B 160 SHEET 7 B 7 MET B 251 ILE B 254 1 O ILE B 252 N CYS B 212 CISPEP 1 GLY A 229 PRO A 230 0 4.08 CISPEP 2 GLY B 229 PRO B 230 0 5.24 SITE 1 AC1 4 ASN A 214 PHE A 215 SER A 256 HOH A 724 SITE 1 AC2 4 ASP A 62 ILE A 63 CL A 405 HOH A 780 SITE 1 AC3 4 ASN B 214 PHE B 215 SER B 256 HOH B 665 SITE 1 AC4 1 ILE B 43 SITE 1 AC5 3 CYS A 89 CL A 402 HOH A 792 SITE 1 AC6 2 HOH A 793 GLN B 128 SITE 1 AC7 7 GLY A 42 ILE A 43 ALA A 168 ALA A 169 SITE 2 AC7 7 HOH A 741 HOH A 748 HOH A 818 SITE 1 AC8 5 ARG A 92 HOH A 793 HOH A 849 THR B 127 SITE 2 AC8 5 PRO B 130 SITE 1 AC9 9 ILE A 267 HOH A 704 SER B 122 LYS B 148 SITE 2 AC9 9 THR B 155 LEU B 194 GLU B 197 HOH B 602 SITE 3 AC9 9 HOH B 641 SITE 1 BC1 3 GLU A 197 LEU B 178 HOH B 618 SITE 1 BC2 8 ILE B 63 VAL B 87 ASP B 88 CYS B 89 SITE 2 BC2 8 SER B 90 GLY B 117 VAL B 138 HOH B 629 CRYST1 110.939 110.939 118.013 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008474 0.00000