PDB Short entry for 1YIU HEADER LIGASE 13-JAN-05 1YIU TITLE ITCH E3 UBIQUITIN LIGASE WW3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ITCHY E3 UBIQUITIN PROTEIN LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WW3; COMPND 5 EC: 6.3.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ITCH E3 WW3 DOMAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS WW DOMAIN, LIGASE EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR A.Z.SHAW,P.MARTIN-MALPARTIDA,B.MORALES,F.YRAOLA,M.ROYO,M.J.MACIAS REVDAT 3 02-MAR-22 1YIU 1 REMARK SEQADV REVDAT 2 24-FEB-09 1YIU 1 VERSN REVDAT 1 02-AUG-05 1YIU 0 JRNL AUTH A.Z.SHAW,P.MARTIN-MALPARTIDA,B.MORALES,F.YRAOLA,M.ROYO, JRNL AUTH 2 M.J.MACIAS JRNL TITL PHOSPHORYLATION OF EITHER SER16 OR THR30 DOES NOT DISRUPT JRNL TITL 2 THE STRUCTURE OF THE ITCH E3 UBIQUITIN LIGASE THIRD WW JRNL TITL 3 DOMAIN JRNL REF PROTEINS V. 60 558 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15971201 JRNL DOI 10.1002/PROT.20466 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3, ARIA 2.0A, CNS 1.1 REMARK 3 AUTHORS : BRUKER GMBH (XWINNMR), NILGES, M. (ARIA), BRUENGER REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE EMPLOYED REFINEMENT ENGINE WAS CNS REMARK 3 1.1 , BUT USING THE WATER REFINEMENT CNS SCRIPTS SUPPLIED WITH REMARK 3 ARIA 2.0A REMARK 4 REMARK 4 1YIU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031562. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NA2HPO4 20MM NACL 100MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : UNLABELED SAMPLE; UNIFORM REMARK 210 LABELING WITH 15N; UNIFORM REMARK 210 LABELING WITH 15N, 13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, XEASY 1.3, CNS 1.1, REMARK 210 ARIA 2.0A REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 15 H ARG A 19 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 70.05 57.45 REMARK 500 1 PRO A 8 97.07 -40.91 REMARK 500 1 ARG A 36 42.68 -91.81 REMARK 500 2 PRO A 5 -157.09 -69.18 REMARK 500 2 PRO A 8 98.28 -39.68 REMARK 500 3 MET A 3 -84.60 67.04 REMARK 500 3 PRO A 8 106.54 -49.45 REMARK 500 3 ARG A 36 48.29 -81.97 REMARK 500 4 PRO A 5 150.70 -45.75 REMARK 500 4 PRO A 8 98.64 -42.66 REMARK 500 4 ARG A 28 67.88 63.42 REMARK 500 5 PRO A 8 100.61 -54.78 REMARK 500 6 PRO A 8 100.83 -50.14 REMARK 500 6 ARG A 28 63.42 60.96 REMARK 500 7 PRO A 8 98.23 -34.40 REMARK 500 7 ARG A 28 61.14 60.38 REMARK 500 7 ARG A 36 -73.18 -68.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YIU A 4 37 UNP Q8C863 ITCH_MOUSE 399 432 SEQADV 1YIU GLY A 1 UNP Q8C863 CLONING ARTIFACT SEQADV 1YIU ALA A 2 UNP Q8C863 CLONING ARTIFACT SEQADV 1YIU MET A 3 UNP Q8C863 CLONING ARTIFACT SEQRES 1 A 37 GLY ALA MET GLY PRO LEU PRO PRO GLY TRP GLU LYS ARG SEQRES 2 A 37 THR ASP SER ASN GLY ARG VAL TYR PHE VAL ASN HIS ASN SEQRES 3 A 37 THR ARG ILE THR GLN TRP GLU ASP PRO ARG SER SHEET 1 A 3 LYS A 12 THR A 14 0 SHEET 2 A 3 VAL A 20 ASN A 24 -1 O TYR A 21 N ARG A 13 SHEET 3 A 3 ILE A 29 GLN A 31 -1 O GLN A 31 N PHE A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000