PDB Short entry for 1YKB HEADER CYTOKINE 17-JAN-05 1YKB TITLE CRYSTAL STRUCTURE OF INSECT CELL EXPRESSED IL-22 CAVEAT 1YKB NAG H 2 HAS WRONG CHIRALITY AT ATOM C1 MAN I 3 HAS WRONG CAVEAT 2 1YKB CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (INTERLEUKIN-22); COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: IL-22, IL-10-RELATED T-CELL-DERIVED INDUCIBLE FACTOR, IL- COMPND 5 TIF, UNQ3099/PRO10096; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL22, ILTIF; SOURCE 6 EXPRESSION_SYSTEM_COMMON: INSECT KEYWDS INTERLEUKIN, CYTOKINE, IL-22, GLYCOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR T.XU,N.J.LOGSDON,M.R.WALTER REVDAT 4 29-JUL-20 1YKB 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 1YKB 1 VERSN REVDAT 2 24-FEB-09 1YKB 1 VERSN REVDAT 1 12-JUL-05 1YKB 0 JRNL AUTH T.XU,N.J.LOGSDON,M.R.WALTER JRNL TITL STRUCTURE OF INSECT-CELL-DERIVED IL-22. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 942 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15983417 JRNL DOI 10.1107/S0907444905009601 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 32762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1651 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3257 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 175 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 252 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.52000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : -5.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 34.11 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000031612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.255 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33239 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.11350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 150 O HOH A 325 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 50 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 103 -55.39 -125.49 REMARK 500 PRO A 106 -84.85 -67.16 REMARK 500 GLN A 107 29.85 -50.75 REMARK 500 THR A 131 56.32 -91.70 REMARK 500 PRO B 50 -110.73 -14.28 REMARK 500 TYR B 51 40.66 -107.19 REMARK 500 VAL B 103 -54.52 -130.47 REMARK 500 SER B 108 -13.04 -49.49 REMARK 500 ARG C 41 76.69 -170.90 REMARK 500 PRO C 50 -18.97 -20.51 REMARK 500 LEU C 74 -61.58 -97.83 REMARK 500 VAL C 103 -54.28 -128.87 REMARK 500 SER C 108 -16.33 -46.80 REMARK 500 THR C 131 32.00 -87.04 REMARK 500 LEU D 65 4.06 -68.89 REMARK 500 VAL D 103 -56.20 -124.37 REMARK 500 LYS E 44 -19.02 -46.95 REMARK 500 PRO E 50 -101.77 -26.41 REMARK 500 TYR E 51 31.43 -98.68 REMARK 500 ASN E 69 42.95 -90.07 REMARK 500 LEU E 74 -65.29 -94.90 REMARK 500 VAL E 103 -57.42 -126.72 REMARK 500 PRO E 106 -71.09 -90.78 REMARK 500 GLN E 107 15.49 -58.91 REMARK 500 LEU F 65 6.21 -69.33 REMARK 500 THR F 70 45.83 -153.28 REMARK 500 VAL F 72 116.93 -167.02 REMARK 500 SER F 108 -35.71 -27.22 REMARK 500 ARG F 110 -176.29 -67.23 REMARK 500 THR F 131 1.29 -69.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 1YKB A 38 179 UNP Q9GZX6 IL22_HUMAN 38 179 DBREF 1YKB B 38 179 UNP Q9GZX6 IL22_HUMAN 38 179 DBREF 1YKB C 38 179 UNP Q9GZX6 IL22_HUMAN 38 179 DBREF 1YKB D 38 179 UNP Q9GZX6 IL22_HUMAN 38 179 DBREF 1YKB E 38 179 UNP Q9GZX6 IL22_HUMAN 38 179 DBREF 1YKB F 38 179 UNP Q9GZX6 IL22_HUMAN 38 179 SEQRES 1 A 142 SER HIS CYS ARG LEU ASP LYS SER ASN PHE GLN GLN PRO SEQRES 2 A 142 TYR ILE THR ASN ARG THR PHE MET LEU ALA LYS GLU ALA SEQRES 3 A 142 SER LEU ALA ASP ASN ASN THR ASP VAL ARG LEU ILE GLY SEQRES 4 A 142 GLU LYS LEU PHE HIS GLY VAL SER MET SER GLU ARG CYS SEQRES 5 A 142 TYR LEU MET LYS GLN VAL LEU ASN PHE THR LEU GLU GLU SEQRES 6 A 142 VAL LEU PHE PRO GLN SER ASP ARG PHE GLN PRO TYR MET SEQRES 7 A 142 GLN GLU VAL VAL PRO PHE LEU ALA ARG LEU SER ASN ARG SEQRES 8 A 142 LEU SER THR CYS HIS ILE GLU GLY ASP ASP LEU HIS ILE SEQRES 9 A 142 GLN ARG ASN VAL GLN LYS LEU LYS ASP THR VAL LYS LYS SEQRES 10 A 142 LEU GLY GLU SER GLY GLU ILE LYS ALA ILE GLY GLU LEU SEQRES 11 A 142 ASP LEU LEU PHE MET SER LEU ARG ASN ALA CYS ILE SEQRES 1 B 142 SER HIS CYS ARG LEU ASP LYS SER ASN PHE GLN GLN PRO SEQRES 2 B 142 TYR ILE THR ASN ARG THR PHE MET LEU ALA LYS GLU ALA SEQRES 3 B 142 SER LEU ALA ASP ASN ASN THR ASP VAL ARG LEU ILE GLY SEQRES 4 B 142 GLU LYS LEU PHE HIS GLY VAL SER MET SER GLU ARG CYS SEQRES 5 B 142 TYR LEU MET LYS GLN VAL LEU ASN PHE THR LEU GLU GLU SEQRES 6 B 142 VAL LEU PHE PRO GLN SER ASP ARG PHE GLN PRO TYR MET SEQRES 7 B 142 GLN GLU VAL VAL PRO PHE LEU ALA ARG LEU SER ASN ARG SEQRES 8 B 142 LEU SER THR CYS HIS ILE GLU GLY ASP ASP LEU HIS ILE SEQRES 9 B 142 GLN ARG ASN VAL GLN LYS LEU LYS ASP THR VAL LYS LYS SEQRES 10 B 142 LEU GLY GLU SER GLY GLU ILE LYS ALA ILE GLY GLU LEU SEQRES 11 B 142 ASP LEU LEU PHE MET SER LEU ARG ASN ALA CYS ILE SEQRES 1 C 142 SER HIS CYS ARG LEU ASP LYS SER ASN PHE GLN GLN PRO SEQRES 2 C 142 TYR ILE THR ASN ARG THR PHE MET LEU ALA LYS GLU ALA SEQRES 3 C 142 SER LEU ALA ASP ASN ASN THR ASP VAL ARG LEU ILE GLY SEQRES 4 C 142 GLU LYS LEU PHE HIS GLY VAL SER MET SER GLU ARG CYS SEQRES 5 C 142 TYR LEU MET LYS GLN VAL LEU ASN PHE THR LEU GLU GLU SEQRES 6 C 142 VAL LEU PHE PRO GLN SER ASP ARG PHE GLN PRO TYR MET SEQRES 7 C 142 GLN GLU VAL VAL PRO PHE LEU ALA ARG LEU SER ASN ARG SEQRES 8 C 142 LEU SER THR CYS HIS ILE GLU GLY ASP ASP LEU HIS ILE SEQRES 9 C 142 GLN ARG ASN VAL GLN LYS LEU LYS ASP THR VAL LYS LYS SEQRES 10 C 142 LEU GLY GLU SER GLY GLU ILE LYS ALA ILE GLY GLU LEU SEQRES 11 C 142 ASP LEU LEU PHE MET SER LEU ARG ASN ALA CYS ILE SEQRES 1 D 142 SER HIS CYS ARG LEU ASP LYS SER ASN PHE GLN GLN PRO SEQRES 2 D 142 TYR ILE THR ASN ARG THR PHE MET LEU ALA LYS GLU ALA SEQRES 3 D 142 SER LEU ALA ASP ASN ASN THR ASP VAL ARG LEU ILE GLY SEQRES 4 D 142 GLU LYS LEU PHE HIS GLY VAL SER MET SER GLU ARG CYS SEQRES 5 D 142 TYR LEU MET LYS GLN VAL LEU ASN PHE THR LEU GLU GLU SEQRES 6 D 142 VAL LEU PHE PRO GLN SER ASP ARG PHE GLN PRO TYR MET SEQRES 7 D 142 GLN GLU VAL VAL PRO PHE LEU ALA ARG LEU SER ASN ARG SEQRES 8 D 142 LEU SER THR CYS HIS ILE GLU GLY ASP ASP LEU HIS ILE SEQRES 9 D 142 GLN ARG ASN VAL GLN LYS LEU LYS ASP THR VAL LYS LYS SEQRES 10 D 142 LEU GLY GLU SER GLY GLU ILE LYS ALA ILE GLY GLU LEU SEQRES 11 D 142 ASP LEU LEU PHE MET SER LEU ARG ASN ALA CYS ILE SEQRES 1 E 142 SER HIS CYS ARG LEU ASP LYS SER ASN PHE GLN GLN PRO SEQRES 2 E 142 TYR ILE THR ASN ARG THR PHE MET LEU ALA LYS GLU ALA SEQRES 3 E 142 SER LEU ALA ASP ASN ASN THR ASP VAL ARG LEU ILE GLY SEQRES 4 E 142 GLU LYS LEU PHE HIS GLY VAL SER MET SER GLU ARG CYS SEQRES 5 E 142 TYR LEU MET LYS GLN VAL LEU ASN PHE THR LEU GLU GLU SEQRES 6 E 142 VAL LEU PHE PRO GLN SER ASP ARG PHE GLN PRO TYR MET SEQRES 7 E 142 GLN GLU VAL VAL PRO PHE LEU ALA ARG LEU SER ASN ARG SEQRES 8 E 142 LEU SER THR CYS HIS ILE GLU GLY ASP ASP LEU HIS ILE SEQRES 9 E 142 GLN ARG ASN VAL GLN LYS LEU LYS ASP THR VAL LYS LYS SEQRES 10 E 142 LEU GLY GLU SER GLY GLU ILE LYS ALA ILE GLY GLU LEU SEQRES 11 E 142 ASP LEU LEU PHE MET SER LEU ARG ASN ALA CYS ILE SEQRES 1 F 142 SER HIS CYS ARG LEU ASP LYS SER ASN PHE GLN GLN PRO SEQRES 2 F 142 TYR ILE THR ASN ARG THR PHE MET LEU ALA LYS GLU ALA SEQRES 3 F 142 SER LEU ALA ASP ASN ASN THR ASP VAL ARG LEU ILE GLY SEQRES 4 F 142 GLU LYS LEU PHE HIS GLY VAL SER MET SER GLU ARG CYS SEQRES 5 F 142 TYR LEU MET LYS GLN VAL LEU ASN PHE THR LEU GLU GLU SEQRES 6 F 142 VAL LEU PHE PRO GLN SER ASP ARG PHE GLN PRO TYR MET SEQRES 7 F 142 GLN GLU VAL VAL PRO PHE LEU ALA ARG LEU SER ASN ARG SEQRES 8 F 142 LEU SER THR CYS HIS ILE GLU GLY ASP ASP LEU HIS ILE SEQRES 9 F 142 GLN ARG ASN VAL GLN LYS LEU LYS ASP THR VAL LYS LYS SEQRES 10 F 142 LEU GLY GLU SER GLY GLU ILE LYS ALA ILE GLY GLU LEU SEQRES 11 F 142 ASP LEU LEU PHE MET SER LEU ARG ASN ALA CYS ILE MODRES 1YKB ASN A 54 ASN GLYCOSYLATION SITE MODRES 1YKB ASN A 97 ASN GLYCOSYLATION SITE MODRES 1YKB ASN B 97 ASN GLYCOSYLATION SITE MODRES 1YKB ASN C 97 ASN GLYCOSYLATION SITE MODRES 1YKB ASN D 54 ASN GLYCOSYLATION SITE MODRES 1YKB ASN D 97 ASN GLYCOSYLATION SITE MODRES 1YKB ASN E 97 ASN GLYCOSYLATION SITE MODRES 1YKB ASN F 54 ASN GLYCOSYLATION SITE MODRES 1YKB ASN F 97 ASN GLYCOSYLATION SITE HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET MAN I 3 11 HET MAN I 4 11 HET FUC I 5 10 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET NAG L 1 14 HET NAG L 2 14 HET NAG A1131 14 HET NAG B1231 14 HET NAG E1531 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE FORMUL 7 NAG 15(C8 H15 N O6) FORMUL 7 FUC 2(C6 H12 O5) FORMUL 9 MAN 2(C6 H12 O6) FORMUL 16 HOH *51(H2 O) HELIX 1 1 ASP A 43 GLN A 48 5 6 HELIX 2 2 GLN A 49 LEU A 65 1 17 HELIX 3 3 GLY A 76 HIS A 81 1 6 HELIX 4 4 SER A 84 SER A 86 5 3 HELIX 5 5 GLU A 87 VAL A 103 1 17 HELIX 6 6 TYR A 114 LEU A 129 1 16 HELIX 7 7 SER A 130 CYS A 132 5 3 HELIX 8 8 ASP A 138 LEU A 155 1 18 HELIX 9 9 LEU A 155 GLU A 166 1 12 HELIX 10 10 GLU A 166 ILE A 179 1 14 HELIX 11 11 ASP B 43 GLN B 48 5 6 HELIX 12 12 TYR B 51 ALA B 66 1 16 HELIX 13 13 GLY B 76 HIS B 81 5 6 HELIX 14 14 GLU B 87 VAL B 103 1 17 HELIX 15 15 PRO B 113 SER B 130 1 18 HELIX 16 16 ASP B 138 LEU B 155 1 18 HELIX 17 17 LEU B 155 GLY B 165 1 11 HELIX 18 18 GLU B 166 ILE B 179 1 14 HELIX 19 19 ASP C 43 GLN C 48 5 6 HELIX 20 20 PRO C 50 ALA C 66 1 17 HELIX 21 21 GLY C 76 HIS C 81 5 6 HELIX 22 22 SER C 84 VAL C 103 1 20 HELIX 23 23 PRO C 113 SER C 130 1 18 HELIX 24 24 ASP C 138 LEU C 155 1 18 HELIX 25 25 GLY C 156 GLY C 165 1 10 HELIX 26 26 GLU C 166 ILE C 179 1 14 HELIX 27 27 ASP D 43 GLN D 48 5 6 HELIX 28 28 GLN D 49 LEU D 65 1 17 HELIX 29 29 GLY D 76 HIS D 81 1 6 HELIX 30 30 SER D 84 SER D 86 5 3 HELIX 31 31 GLU D 87 VAL D 103 1 17 HELIX 32 32 TYR D 114 LEU D 129 1 16 HELIX 33 33 SER D 130 CYS D 132 5 3 HELIX 34 34 ASP D 138 LEU D 155 1 18 HELIX 35 35 LEU D 155 GLU D 166 1 12 HELIX 36 36 GLU D 166 ILE D 179 1 14 HELIX 37 37 ASP E 43 GLN E 48 5 6 HELIX 38 38 TYR E 51 ALA E 66 1 16 HELIX 39 39 GLY E 76 HIS E 81 5 6 HELIX 40 40 SER E 84 VAL E 103 1 20 HELIX 41 41 PRO E 113 LEU E 129 1 17 HELIX 42 42 SER E 130 CYS E 132 5 3 HELIX 43 43 ASP E 138 LEU E 155 1 18 HELIX 44 44 LEU E 155 GLY E 165 1 11 HELIX 45 45 GLU E 166 ILE E 179 1 14 HELIX 46 46 ASP F 43 GLN F 48 5 6 HELIX 47 47 GLN F 49 LEU F 65 1 17 HELIX 48 48 GLY F 76 HIS F 81 1 6 HELIX 49 49 SER F 84 SER F 86 5 3 HELIX 50 50 GLU F 87 GLU F 102 1 16 HELIX 51 51 VAL F 103 SER F 108 1 6 HELIX 52 52 TYR F 114 LEU F 129 1 16 HELIX 53 53 SER F 130 CYS F 132 5 3 HELIX 54 54 ASP F 138 LEU F 155 1 18 HELIX 55 55 LEU F 155 GLU F 166 1 12 HELIX 56 56 GLU F 166 ILE F 179 1 14 SSBOND 1 CYS A 40 CYS A 132 1555 1555 2.02 SSBOND 2 CYS A 89 CYS A 178 1555 1555 2.05 SSBOND 3 CYS B 40 CYS B 132 1555 1555 2.02 SSBOND 4 CYS B 89 CYS B 178 1555 1555 2.05 SSBOND 5 CYS C 40 CYS C 132 1555 1555 2.04 SSBOND 6 CYS C 89 CYS C 178 1555 1555 2.04 SSBOND 7 CYS D 40 CYS D 132 1555 1555 2.02 SSBOND 8 CYS D 89 CYS D 178 1555 1555 2.05 SSBOND 9 CYS E 40 CYS E 132 1555 1555 2.04 SSBOND 10 CYS E 89 CYS E 178 1555 1555 2.04 SSBOND 11 CYS F 40 CYS F 132 1555 1555 2.02 SSBOND 12 CYS F 89 CYS F 178 1555 1555 2.04 LINK ND2 ASN A 54 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN A 97 C1 NAG A1131 1555 1555 1.45 LINK ND2 ASN B 97 C1 NAG B1231 1555 1555 1.46 LINK ND2 ASN C 97 C1 NAG H 1 1555 1555 1.46 LINK ND2 ASN D 54 C1 NAG I 1 1555 1555 1.45 LINK ND2 ASN D 97 C1 NAG J 1 1555 1555 1.45 LINK ND2 ASN E 97 C1 NAG E1531 1555 1555 1.45 LINK ND2 ASN F 54 C1 NAG K 1 1555 1555 1.45 LINK ND2 ASN F 97 C1 NAG L 1 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.39 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.40 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.40 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.39 LINK O6 NAG I 1 C1 FUC I 5 1555 1555 1.41 LINK O4 NAG I 2 C1 MAN I 3 1555 1555 1.39 LINK O6 MAN I 3 C1 MAN I 4 1555 1555 1.40 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.40 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.39 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.39 CISPEP 1 GLN A 112 PRO A 113 0 -0.03 CISPEP 2 GLN B 112 PRO B 113 0 0.19 CISPEP 3 GLN C 112 PRO C 113 0 0.35 CISPEP 4 GLN D 112 PRO D 113 0 0.07 CISPEP 5 GLN E 112 PRO E 113 0 0.35 CISPEP 6 GLN F 112 PRO F 113 0 -0.22 CRYST1 64.877 62.227 139.524 90.00 91.35 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015414 0.000000 0.000363 0.00000 SCALE2 0.000000 0.016070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007169 0.00000