PDB Short entry for 1YMM HEADER IMMUNE SYSTEM 21-JAN-05 1YMM TITLE TCR/HLA-DR2B/MBP-PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HLA-DR2B ALPHA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HLA-DR2B BETA; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: MBP PEPTIDE; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: T CELL RECEPTOR ALPHA CHAIN; COMPND 17 CHAIN: D; COMPND 18 SYNONYM: TCR OB.1A12 ALPHA; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: T-CELL RECEPTOR BETA CHAIN; COMPND 22 CHAIN: E; COMPND 23 SYNONYM: TCR OB.1A12 BETA; COMPND 24 ENGINEERED: YES; COMPND 25 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACDB3; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 17 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PACDB3; SOURCE 22 MOL_ID: 3; SOURCE 23 SYNTHETIC: YES; SOURCE 24 MOL_ID: 4; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 29 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PACDB3; SOURCE 34 MOL_ID: 5; SOURCE 35 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 36 ORGANISM_COMMON: HUMAN; SOURCE 37 ORGANISM_TAXID: 9606; SOURCE 38 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 39 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 40 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 41 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 42 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 43 EXPRESSION_SYSTEM_PLASMID: PACDB3 KEYWDS PROTEIN-PROTEIN COMPLEX, T CELL REPERTOIRE, AUTO-IMMUNITY, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.HAHN,M.J.NICHOLSON,J.PYRDOL,K.W.WUCHERPFENNIG REVDAT 6 20-OCT-21 1YMM 1 REMARK SEQADV HETSYN REVDAT 5 29-JUL-20 1YMM 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 13-JUL-11 1YMM 1 VERSN REVDAT 3 24-FEB-09 1YMM 1 VERSN REVDAT 2 19-JUL-05 1YMM 1 SOURCE REVDAT 1 03-MAY-05 1YMM 0 JRNL AUTH M.HAHN,M.J.NICHOLSON,J.PYRDOL,K.W.WUCHERPFENNIG JRNL TITL UNCONVENTIONAL TOPOLOGY OF SELF PEPTIDE-MAJOR JRNL TITL 2 HISTOCOMPATIBILITY COMPLEX BINDING BY A HUMAN AUTOIMMUNE T JRNL TITL 3 CELL RECEPTOR. JRNL REF NAT.IMMUNOL. V. 6 490 2005 JRNL REFN ISSN 1529-2908 JRNL PMID 15821740 JRNL DOI 10.1038/NI1187 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3765203.500 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 24725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1236 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3899 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 221 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.28000 REMARK 3 B22 (A**2) : 2.19000 REMARK 3 B33 (A**2) : -15.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.04 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.190 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.23 REMARK 3 BSOL : 33.86 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35129 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-TARTRATE, AMMONIUM FORMATE, HEPES, REMARK 280 PH 7.0, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 106.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 139.11000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 106.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 139.11000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 106.31000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 139.11000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 106.31000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 139.11000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 139.11000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 139.11000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 139.11000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 139.11000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 106.31000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 106.31000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 106.31000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 68.67000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 106.31000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 SER A 184 REMARK 465 PRO A 185 REMARK 465 LEU A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 GLU A 191 REMARK 465 GLY B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 105 REMARK 465 THR B 106 REMARK 465 GLN B 107 REMARK 465 PRO B 108 REMARK 465 LEU B 109 REMARK 465 GLN B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 ASN B 113 REMARK 465 ALA B 190 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 GLU B 193 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 GLN B 196 REMARK 465 SER B 197 REMARK 465 LYS B 198 REMARK 465 ARG C 99 REMARK 465 GLY C 100 REMARK 465 GLY C 101 REMARK 465 SER C 102 REMARK 465 GLY C 103 REMARK 465 GLY C 104 REMARK 465 GLY C 105 REMARK 465 GLY C 106 REMARK 465 GLY C 107 REMARK 465 SER D 1 REMARK 465 GLN D 2 REMARK 465 GLN D 3 REMARK 465 GLY D 4 REMARK 465 GLU D 5 REMARK 465 GLU D 6 REMARK 465 ASP D 7 REMARK 465 PRO D 8 REMARK 465 GLY D 105 REMARK 465 THR D 106 REMARK 465 ARG D 107 REMARK 465 LEU D 108 REMARK 465 LYS D 109 REMARK 465 VAL D 110 REMARK 465 LEU D 111 REMARK 465 ALA D 112 REMARK 465 ASN D 113 REMARK 465 ILE D 114 REMARK 465 GLN D 115 REMARK 465 ASN D 116 REMARK 465 PRO D 117 REMARK 465 ASP D 118 REMARK 465 PRO D 119 REMARK 465 ALA D 120 REMARK 465 VAL D 121 REMARK 465 TYR D 122 REMARK 465 GLN D 123 REMARK 465 LEU D 124 REMARK 465 ARG D 125 REMARK 465 ASP D 126 REMARK 465 SER D 127 REMARK 465 LYS D 128 REMARK 465 SER D 129 REMARK 465 SER D 130 REMARK 465 ASP D 131 REMARK 465 LYS D 132 REMARK 465 SER D 133 REMARK 465 VAL D 134 REMARK 465 CYS D 135 REMARK 465 LEU D 136 REMARK 465 PHE D 137 REMARK 465 THR D 138 REMARK 465 ASP D 139 REMARK 465 PHE D 140 REMARK 465 ASP D 141 REMARK 465 SER D 142 REMARK 465 GLN D 143 REMARK 465 THR D 144 REMARK 465 ASN D 145 REMARK 465 VAL D 146 REMARK 465 SER D 147 REMARK 465 GLN D 148 REMARK 465 SER D 149 REMARK 465 LYS D 150 REMARK 465 ASP D 151 REMARK 465 SER D 152 REMARK 465 ASP D 153 REMARK 465 VAL D 154 REMARK 465 TYR D 155 REMARK 465 ILE D 156 REMARK 465 THR D 157 REMARK 465 ASP D 158 REMARK 465 LYS D 159 REMARK 465 THR D 160 REMARK 465 VAL D 161 REMARK 465 LEU D 162 REMARK 465 ASP D 163 REMARK 465 MET D 164 REMARK 465 ARG D 165 REMARK 465 SER D 166 REMARK 465 MET D 167 REMARK 465 ASP D 168 REMARK 465 PHE D 169 REMARK 465 LYS D 170 REMARK 465 SER D 171 REMARK 465 ASN D 172 REMARK 465 SER D 173 REMARK 465 ALA D 174 REMARK 465 VAL D 175 REMARK 465 ALA D 176 REMARK 465 TRP D 177 REMARK 465 SER D 178 REMARK 465 ASN D 179 REMARK 465 LYS D 180 REMARK 465 SER D 181 REMARK 465 ASP D 182 REMARK 465 PHE D 183 REMARK 465 ALA D 184 REMARK 465 CYS D 185 REMARK 465 ALA D 186 REMARK 465 ASN D 187 REMARK 465 ALA D 188 REMARK 465 PHE D 189 REMARK 465 ASN D 190 REMARK 465 ASN D 191 REMARK 465 SER D 192 REMARK 465 ILE D 193 REMARK 465 ILE D 194 REMARK 465 PRO D 195 REMARK 465 GLU D 196 REMARK 465 ASP D 197 REMARK 465 THR D 198 REMARK 465 PHE D 199 REMARK 465 PHE D 200 REMARK 465 PRO D 201 REMARK 465 SER D 202 REMARK 465 PRO D 203 REMARK 465 GLU D 204 REMARK 465 SER D 205 REMARK 465 SER D 206 REMARK 465 CYS D 207 REMARK 465 ALA E 247 REMARK 465 ASP E 248 REMARK 465 CYS E 249 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 2 CG CD CE NZ REMARK 480 GLU A 4 CG CD OE1 OE2 REMARK 480 GLN A 18 CG CD OE1 NE2 REMARK 480 ASP A 35 CG OD1 OD2 REMARK 480 MET A 36 CG SD CE REMARK 480 LYS A 38 CG CD CE NZ REMARK 480 LYS A 39 CG CD CE NZ REMARK 480 GLU A 40 CG CD OE1 OE2 REMARK 480 GLU A 55 CG CD OE1 OE2 REMARK 480 LYS A 67 CG CD CE NZ REMARK 480 GLU A 71 OE2 REMARK 480 GLU A 101 CG CD OE1 OE2 REMARK 480 LYS A 111 CG CD CE NZ REMARK 480 LYS A 126 CG CD CE NZ REMARK 480 LEU A 138 CG CD1 CD2 REMARK 480 GLU A 141 CG CD OE1 OE2 REMARK 480 GLU A 158 CG CD OE1 OE2 REMARK 480 VAL A 165 CG1 CG2 REMARK 480 GLU A 166 CG CD OE1 OE2 REMARK 480 ASP A 171 CG OD1 OD2 REMARK 480 GLU A 172 CG CD OE1 OE2 REMARK 480 GLU A 179 CG CD OE1 OE2 REMARK 480 ASN B 19 CG OD1 ND2 REMARK 480 GLU B 22 CG CD OE1 OE2 REMARK 480 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 35 CG CD OE1 OE2 REMARK 480 GLU B 52 CG CD OE1 OE2 REMARK 480 LEU B 53 CG CD1 CD2 REMARK 480 GLU B 59 CG CD OE1 OE2 REMARK 480 LYS B 65 CG CD CE NZ REMARK 480 LEU B 68 CG CD1 CD2 REMARK 480 GLU B 69 CG CD OE1 OE2 REMARK 480 GLU B 87 CG CD OE1 OE2 REMARK 480 LYS B 98 CG CD CE NZ REMARK 480 LYS B 139 CG CD CE NZ REMARK 480 VAL B 143 CG1 CG2 REMARK 480 LEU B 158 CG CD1 CD2 REMARK 480 GLU B 162 CG CD OE1 OE2 REMARK 480 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 480 SER B 167 OG REMARK 480 SER B 182 OG REMARK 480 GLN D 9 CG CD OE1 NE2 REMARK 480 LEU D 11 CG CD1 CD2 REMARK 480 SER D 12 OG REMARK 480 ILE D 13 CG1 CG2 CD1 REMARK 480 GLN D 14 CG CD OE1 NE2 REMARK 480 GLU D 15 CG CD OE1 OE2 REMARK 480 GLU D 17 CG CD OE1 OE2 REMARK 480 ASN D 18 CG OD1 ND2 REMARK 480 ASN D 22 CG OD1 ND2 REMARK 480 SER D 24 OG REMARK 480 THR D 27 OG1 CG2 REMARK 480 ILE D 29 CG1 CG2 CD1 REMARK 480 GLN D 37 CG CD OE1 NE2 REMARK 480 SER D 39 OG REMARK 480 LEU D 43 CG CD1 CD2 REMARK 480 VAL D 44 CG1 CG2 REMARK 480 LEU D 46 CG CD1 CD2 REMARK 480 ILE D 47 CG1 CG2 CD1 REMARK 480 LEU D 48 CG CD1 CD2 REMARK 480 ILE D 49 CG1 CG2 CD1 REMARK 480 ARG D 54 CG CD NE CZ NH1 NH2 REMARK 480 GLU D 55 CG CD OE1 OE2 REMARK 480 LYS D 56 CG CD CE NZ REMARK 480 SER D 58 OG REMARK 480 ARG D 60 CG CD NE CZ NH1 NH2 REMARK 480 LEU D 61 CG CD1 CD2 REMARK 480 ARG D 62 CG CD NE CZ NH1 NH2 REMARK 480 VAL D 63 CG1 CG2 REMARK 480 THR D 64 OG1 CG2 REMARK 480 LEU D 65 CG CD1 CD2 REMARK 480 ASP D 66 CG OD1 OD2 REMARK 480 THR D 67 OG1 CG2 REMARK 480 SER D 68 OG REMARK 480 LYS D 69 CG CD CE NZ REMARK 480 LYS D 70 CG CD CE NZ REMARK 480 SER D 73 OG REMARK 480 LEU D 74 CG CD1 CD2 REMARK 480 LEU D 75 CG CD1 CD2 REMARK 480 ILE D 76 CG1 CG2 CD1 REMARK 480 THR D 77 OG1 CG2 REMARK 480 ASP D 83 CG OD1 OD2 REMARK 480 SER D 86 OG REMARK 480 TYR D 87 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 THR D 104 OG1 CG2 REMARK 480 VAL E 3 CG1 CG2 REMARK 480 VAL E 11 CG1 CG2 REMARK 480 ILE E 12 CG1 CG2 CD1 REMARK 480 SER E 13 OG REMARK 480 LYS E 14 CG CD CE NZ REMARK 480 SER E 15 OG REMARK 480 THR E 17 OG1 CG2 REMARK 480 SER E 18 OG REMARK 480 VAL E 19 CG1 CG2 REMARK 480 LYS E 20 CG CD CE NZ REMARK 480 ARG E 24 CG CD NE CZ NH1 NH2 REMARK 480 LEU E 26 CG CD1 CD2 REMARK 480 ASP E 27 CG OD1 OD2 REMARK 480 LYS E 41 CG CD CE NZ REMARK 480 GLN E 42 CG CD OE1 NE2 REMARK 480 LEU E 44 CG CD1 CD2 REMARK 480 MET E 45 CG SD CE REMARK 480 SER E 50 OG REMARK 480 LYS E 55 CG CD CE NZ REMARK 480 THR E 57 OG1 CG2 REMARK 480 TYR E 58 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLN E 60 CG CD OE1 NE2 REMARK 480 VAL E 62 CG1 CG2 REMARK 480 LYS E 64 CG CD CE NZ REMARK 480 LYS E 66 CG CD CE NZ REMARK 480 PHE E 67 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ASN E 70 CG OD1 ND2 REMARK 480 SER E 73 OG REMARK 480 LEU E 76 CG CD1 CD2 REMARK 480 SER E 77 OG REMARK 480 THR E 78 OG1 CG2 REMARK 480 THR E 80 OG1 CG2 REMARK 480 SER E 83 OG REMARK 480 HIS E 85 CG ND1 CD2 CE1 NE2 REMARK 480 GLU E 87 CG CD OE1 OE2 REMARK 480 ASP E 88 CG OD1 OD2 REMARK 480 SER E 89 OG REMARK 480 ILE E 93 CG1 CG2 CD1 REMARK 480 THR E 113 OG1 CG2 REMARK 480 ARG E 114 CG CD NE CZ NH1 NH2 REMARK 480 LEU E 115 CG CD1 CD2 REMARK 480 THR E 116 OG1 CG2 REMARK 480 VAL E 117 CG1 CG2 REMARK 480 LEU E 118 CG CD1 CD2 REMARK 480 GLU E 119 CG CD OE1 OE2 REMARK 480 ASP E 120 CG OD1 OD2 REMARK 480 LEU E 121 CG CD1 CD2 REMARK 480 LYS E 122 CG CD CE NZ REMARK 480 ASN E 123 CG OD1 ND2 REMARK 480 VAL E 124 CG1 CG2 REMARK 480 PHE E 125 CG CD1 CD2 CE1 CE2 CZ REMARK 480 VAL E 129 CG1 CG2 REMARK 480 VAL E 131 CG1 CG2 REMARK 480 PHE E 132 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU E 133 CG CD OE1 OE2 REMARK 480 SER E 135 OG REMARK 480 GLU E 136 CG CD OE1 OE2 REMARK 480 GLU E 138 CG CD OE1 OE2 REMARK 480 SER E 140 OG REMARK 480 HIS E 141 CG ND1 CD2 CE1 NE2 REMARK 480 LYS E 144 CG CD CE NZ REMARK 480 VAL E 148 CG1 CG2 REMARK 480 THR E 152 OG1 CG2 REMARK 480 HIS E 158 CG ND1 CD2 CE1 NE2 REMARK 480 GLU E 160 CG CD OE1 OE2 REMARK 480 SER E 162 OG REMARK 480 TRP E 164 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP E 164 CZ3 CH2 REMARK 480 VAL E 165 CG1 CG2 REMARK 480 ASN E 166 CG OD1 ND2 REMARK 480 LYS E 168 CG CD CE NZ REMARK 480 GLU E 169 CG CD OE1 OE2 REMARK 480 VAL E 170 CG1 CG2 REMARK 480 HIS E 171 CG ND1 CD2 CE1 NE2 REMARK 480 SER E 172 OG REMARK 480 THR E 176 OG1 CG2 REMARK 480 ASP E 177 CG OD1 OD2 REMARK 480 GLN E 179 CG CD OE1 NE2 REMARK 480 LEU E 181 CG CD1 CD2 REMARK 480 LYS E 182 CG CD CE NZ REMARK 480 GLU E 183 CG CD OE1 OE2 REMARK 480 GLN E 184 CG CD OE1 NE2 REMARK 480 LEU E 187 CG CD1 CD2 REMARK 480 ASN E 188 CG OD1 ND2 REMARK 480 ASP E 189 CG OD1 OD2 REMARK 480 SER E 190 OG REMARK 480 ARG E 191 CG CD NE CZ NH1 NH2 REMARK 480 TYR E 192 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 SER E 193 OG REMARK 480 LEU E 194 CG CD1 CD2 REMARK 480 SER E 196 OG REMARK 480 ARG E 197 CG CD NE CZ NH1 NH2 REMARK 480 LEU E 198 CG CD1 CD2 REMARK 480 ARG E 199 CG CD NE CZ NH1 NH2 REMARK 480 VAL E 200 CG1 CG2 REMARK 480 SER E 201 OG REMARK 480 THR E 203 OG1 CG2 REMARK 480 PHE E 204 CG CD1 CD2 CE1 CE2 CZ REMARK 480 TRP E 205 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP E 205 CZ3 CH2 REMARK 480 GLN E 206 CG CD OE1 NE2 REMARK 480 ASN E 207 CG OD1 ND2 REMARK 480 ARG E 209 CG CD NE CZ NH1 NH2 REMARK 480 ASN E 210 CG OD1 ND2 REMARK 480 GLN E 217 CG CD OE1 NE2 REMARK 480 TYR E 219 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 LEU E 221 CG CD1 CD2 REMARK 480 SER E 222 OG REMARK 480 GLU E 223 CG CD OE1 OE2 REMARK 480 ASN E 224 CG OD1 ND2 REMARK 480 ASP E 225 CG OD1 OD2 REMARK 480 GLU E 226 CG CD OE1 OE2 REMARK 480 THR E 228 OG1 CG2 REMARK 480 GLN E 229 CG CD OE1 NE2 REMARK 480 ASP E 230 CG OD1 OD2 REMARK 480 ARG E 231 CG CD NE CZ NH1 NH2 REMARK 480 LYS E 233 CG CD CE NZ REMARK 480 VAL E 235 CG1 CG2 REMARK 480 THR E 236 OG1 CG2 REMARK 480 GLN E 237 CG CD OE1 NE2 REMARK 480 ILE E 238 CG1 CG2 CD1 REMARK 480 VAL E 239 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLN D 37 NH1 ARG D 41 1.69 REMARK 500 OG SER E 73 N LEU E 76 1.71 REMARK 500 O PHE B 18 CZ ARG B 23 1.77 REMARK 500 CE1 HIS E 158 O TYR E 219 1.81 REMARK 500 O PHE B 18 NH2 ARG B 23 1.90 REMARK 500 O PHE B 18 NE ARG B 23 1.91 REMARK 500 ND1 HIS E 158 N TYR E 219 1.94 REMARK 500 O ARG D 36 CG2 VAL D 44 1.99 REMARK 500 OG SER E 5 CD ARG E 24 2.00 REMARK 500 N SER E 5 CZ ARG E 24 2.12 REMARK 500 NE1 TRP A 168 O6 NAG A 192 2.14 REMARK 500 ND2 ASN E 210 N GLY E 245 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C LYS E 168 OE1 GLU E 169 4555 0.53 REMARK 500 CA LYS E 168 OE1 GLU E 169 4555 1.16 REMARK 500 N GLU E 169 OE1 GLU E 169 4555 1.37 REMARK 500 OE1 GLU D 15 O THR D 77 3455 1.38 REMARK 500 OE1 GLU E 223 CB ALA E 232 4555 1.42 REMARK 500 CA LYS E 168 CD GLU E 169 4555 1.54 REMARK 500 N GLU E 169 CD GLU E 169 4555 1.56 REMARK 500 CD GLU D 15 O THR D 77 3455 1.67 REMARK 500 C LYS E 168 CD GLU E 169 4555 1.71 REMARK 500 O LYS E 168 OE1 GLU E 169 4555 1.71 REMARK 500 N GLU E 169 CG GLU E 169 4555 1.72 REMARK 500 CA LYS E 168 OE2 GLU E 169 4555 1.74 REMARK 500 OE2 GLU D 15 O THR D 77 3455 1.89 REMARK 500 NE2 GLN B 174 NE2 GLN B 174 8554 2.01 REMARK 500 CD GLU E 223 CB ALA E 232 4555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN C 86 C ASN C 86 O 0.116 REMARK 500 GLY D 59 CA GLY D 59 C -0.151 REMARK 500 ARG D 62 CA ARG D 62 CB 0.200 REMARK 500 SER D 86 CA SER D 86 CB -0.144 REMARK 500 SER D 86 CA SER D 86 C 0.172 REMARK 500 ASP E 27 CA ASP E 27 CB 0.140 REMARK 500 LYS E 55 CA LYS E 55 C 0.186 REMARK 500 ALA E 202 CA ALA E 202 CB 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 53 CA - CB - CG ANGL. DEV. = 21.3 DEGREES REMARK 500 LEU D 43 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 LEU D 61 CA - C - N ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU D 61 O - C - N ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG D 62 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU D 74 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 SER E 54 CA - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 SER E 54 O - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 LYS E 55 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 LYS E 55 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 LEU E 68 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 LEU E 74 CA - C - N ANGL. DEV. = -25.0 DEGREES REMARK 500 LEU E 74 O - C - N ANGL. DEV. = 17.9 DEGREES REMARK 500 THR E 75 C - N - CA ANGL. DEV. = 25.6 DEGREES REMARK 500 PRO E 126 C - N - CA ANGL. DEV. = -12.3 DEGREES REMARK 500 TRP E 205 CA - CB - CG ANGL. DEV. = -12.9 DEGREES REMARK 500 ASN E 210 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 -58.79 -23.85 REMARK 500 PHE A 48 -33.31 -39.98 REMARK 500 PHE A 54 100.69 -161.02 REMARK 500 ARG A 76 -17.51 -41.71 REMARK 500 THR A 90 134.55 -170.46 REMARK 500 PRO A 102 137.19 -37.22 REMARK 500 ASN A 103 -159.84 -149.48 REMARK 500 LYS A 111 62.99 64.48 REMARK 500 THR A 113 150.44 158.62 REMARK 500 PRO A 115 61.27 -65.64 REMARK 500 ASN A 124 56.33 76.40 REMARK 500 VAL A 136 -153.72 -81.41 REMARK 500 LEU A 144 -159.38 -88.42 REMARK 500 TRP A 168 39.46 -67.13 REMARK 500 PHE A 180 83.55 -27.87 REMARK 500 ASP A 181 167.44 166.74 REMARK 500 ALA A 182 144.31 -173.10 REMARK 500 LEU B 27 86.02 -171.36 REMARK 500 ASN B 33 -166.44 54.32 REMARK 500 GLN B 34 32.22 -64.28 REMARK 500 LEU B 53 -19.48 -38.24 REMARK 500 ILE B 67 -4.28 -48.45 REMARK 500 VAL B 75 -10.63 -41.01 REMARK 500 TYR B 78 -57.82 -135.99 REMARK 500 SER B 88 -52.53 -23.38 REMARK 500 THR B 90 -65.89 -125.67 REMARK 500 PRO B 165 86.97 -60.78 REMARK 500 PRO B 183 145.08 -29.08 REMARK 500 ASN C 86 117.25 98.16 REMARK 500 ILE D 13 142.88 178.86 REMARK 500 GLU D 15 -65.08 -138.32 REMARK 500 GLU D 17 175.01 175.29 REMARK 500 LYS D 26 -71.27 -90.85 REMARK 500 ASN D 30 -61.88 -133.33 REMARK 500 ASN D 38 -140.32 -101.90 REMARK 500 LEU D 43 -151.82 -166.12 REMARK 500 VAL D 44 56.76 -173.63 REMARK 500 HIS D 45 83.78 -64.06 REMARK 500 LEU D 46 -91.93 -61.03 REMARK 500 SER D 51 99.72 -24.25 REMARK 500 ASN D 52 -169.51 167.31 REMARK 500 ARG D 54 94.01 61.61 REMARK 500 GLU D 55 105.95 -161.36 REMARK 500 LYS D 56 104.32 -162.27 REMARK 500 ARG D 60 95.54 -29.52 REMARK 500 LEU D 61 112.12 173.29 REMARK 500 SER D 72 -164.37 -113.65 REMARK 500 SER D 73 121.53 -178.68 REMARK 500 SER D 79 -173.54 -56.81 REMARK 500 ARG D 80 -174.00 -177.95 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 87 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN C 86 -14.18 REMARK 500 LEU E 74 11.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG A 192 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE MUTATIONS ARE LOCATED IN THE HYPERVARIABLE REGION OF THE REMARK 999 CHAIN AND ARE UNIQUE TO SPECIFIC T CELL RECEPTOR. DBREF 1YMM A 1 191 UNP P01903 2DRA_HUMAN 26 216 DBREF 1YMM B 1 198 UNP Q29790 Q29790_HUMAN 1 198 DBREF 1YMM C 85 106 UNP P02686 MBP_HUMAN 217 238 DBREF 1YMM D 1 207 GB 29293741 AAO72258 21 229 DBREF 1YMM E 1 249 UNP P01850 TCB_HUMAN 16 264 SEQADV 1YMM ASP D 92 GB 29293741 ALA 112 SEE REMARK 999 SEQADV 1YMM THR D 93 GB 29293741 ASN 113 SEE REMARK 999 SEQADV 1YMM THR D 94 GB 29293741 ALA 114 SEE REMARK 999 SEQADV 1YMM SER D 95 GB 29293741 GLY 115 SEE REMARK 999 SEQADV 1YMM D GB 29293741 SER 118 SEE REMARK 999 SEQADV 1YMM D GB 29293741 GLY 120 SEE REMARK 999 SEQADV 1YMM TYR D 100 GB 29293741 LEU 122 SEE REMARK 999 SEQADV 1YMM ILE D 101 GB 29293741 THR 123 SEE REMARK 999 SEQADV 1YMM THR D 104 GB 29293741 GLN 126 SEE REMARK 999 SEQADV 1YMM ARG D 107 GB 29293741 ILE 129 SEE REMARK 999 SEQADV 1YMM LYS D 109 GB 29293741 THR 131 SEE REMARK 999 SEQADV 1YMM LEU D 111 GB 29293741 HIS 133 SEE REMARK 999 SEQADV 1YMM ALA D 112 GB 29293741 PRO 134 SEE REMARK 999 SEQADV 1YMM SER E 13 UNP P01850 CYS 28 ENGINEERED MUTATION SEQADV 1YMM ASP E 98 UNP P01850 GLU 113 SEE REMARK 999 SEQADV 1YMM LEU E 99 UNP P01850 SER 114 SEE REMARK 999 SEQADV 1YMM GLY E 102 UNP P01850 ASP 117 SEE REMARK 999 SEQADV 1YMM ALA E 103 UNP P01850 PRO 118 SEE REMARK 999 SEQADV 1YMM ASN E 104 UNP P01850 LYS 119 SEE REMARK 999 SEQADV 1YMM SER E 193 UNP P01850 CYS 208 ENGINEERED MUTATION SEQRES 1 A 191 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 191 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 191 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 191 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 191 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 191 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 191 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 191 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 191 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 191 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 191 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 191 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 191 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 191 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 15 A 191 PRO SER PRO LEU PRO GLU THR THR GLU SEQRES 1 B 198 GLY ASP THR ARG PRO ARG PHE LEU TRP GLN PRO LYS ARG SEQRES 2 B 198 GLU CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG PHE SEQRES 3 B 198 LEU ASP ARG TYR PHE TYR ASN GLN GLU GLU SER VAL ARG SEQRES 4 B 198 PHE ASP SER ASP VAL GLY GLU PHE ARG ALA VAL THR GLU SEQRES 5 B 198 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS SEQRES 6 B 198 ASP ILE LEU GLU GLN ALA ARG ALA ALA VAL ASP THR TYR SEQRES 7 B 198 CYS ARG HIS ASN TYR GLY VAL VAL GLU SER PHE THR VAL SEQRES 8 B 198 GLN ARG ARG VAL GLN PRO LYS VAL THR VAL TYR PRO SER SEQRES 9 B 198 LYS THR GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SEQRES 10 B 198 SER VAL SER GLY PHE TYR PRO GLY SER ILE GLU VAL ARG SEQRES 11 B 198 TRP PHE LEU ASN GLY GLN GLU GLU LYS ALA GLY MET VAL SEQRES 12 B 198 SER THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN SEQRES 13 B 198 THR LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU SEQRES 14 B 198 VAL TYR THR CYS GLN VAL GLU HIS PRO SER VAL THR SER SEQRES 15 B 198 PRO LEU THR VAL GLU TRP ARG ALA ARG SER GLU SER ALA SEQRES 16 B 198 GLN SER LYS SEQRES 1 C 23 GLU ASN PRO VAL VAL HIS PHE PHE LYS ASN ILE VAL THR SEQRES 2 C 23 PRO ARG GLY GLY SER GLY GLY GLY GLY GLY SEQRES 1 D 207 SER GLN GLN GLY GLU GLU ASP PRO GLN ALA LEU SER ILE SEQRES 2 D 207 GLN GLU GLY GLU ASN ALA THR MET ASN CYS SER TYR LYS SEQRES 3 D 207 THR SER ILE ASN ASN LEU GLN TRP TYR ARG GLN ASN SER SEQRES 4 D 207 GLY ARG GLY LEU VAL HIS LEU ILE LEU ILE ARG SER ASN SEQRES 5 D 207 GLU ARG GLU LYS HIS SER GLY ARG LEU ARG VAL THR LEU SEQRES 6 D 207 ASP THR SER LYS LYS SER SER SER LEU LEU ILE THR ALA SEQRES 7 D 207 SER ARG ALA ALA ASP THR ALA SER TYR PHE CYS ALA THR SEQRES 8 D 207 ASP THR THR SER GLY THR TYR LYS TYR ILE PHE GLY THR SEQRES 9 D 207 GLY THR ARG LEU LYS VAL LEU ALA ASN ILE GLN ASN PRO SEQRES 10 D 207 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 D 207 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 D 207 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 D 207 THR ASP LYS THR VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 D 207 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 D 207 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO SEQRES 16 D 207 GLU ASP THR PHE PHE PRO SER PRO GLU SER SER CYS SEQRES 1 E 249 GLY ALA VAL VAL SER GLN HIS PRO SER TRP VAL ILE SER SEQRES 2 E 249 LYS SER GLY THR SER VAL LYS ILE GLU CYS ARG SER LEU SEQRES 3 E 249 ASP PHE GLN ALA THR THR MET PHE TRP TYR ARG GLN PHE SEQRES 4 E 249 PRO LYS GLN SER LEU MET LEU MET ALA THR SER ASN GLU SEQRES 5 E 249 GLY SER LYS ALA THR TYR GLU GLN GLY VAL GLU LYS ASP SEQRES 6 E 249 LYS PHE LEU ILE ASN HIS ALA SER LEU THR LEU SER THR SEQRES 7 E 249 LEU THR VAL THR SER ALA HIS PRO GLU ASP SER SER PHE SEQRES 8 E 249 TYR ILE CYS SER ALA ARG ASP LEU THR SER GLY ALA ASN SEQRES 9 E 249 ASN GLU GLN PHE PHE GLY PRO GLY THR ARG LEU THR VAL SEQRES 10 E 249 LEU GLU ASP LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA SEQRES 11 E 249 VAL PHE GLU PRO SER GLU ALA GLU ILE SER HIS THR GLN SEQRES 12 E 249 LYS ALA THR LEU VAL CYS LEU ALA THR GLY PHE TYR PRO SEQRES 13 E 249 ASP HIS VAL GLU LEU SER TRP TRP VAL ASN GLY LYS GLU SEQRES 14 E 249 VAL HIS SER GLY VAL SER THR ASP PRO GLN PRO LEU LYS SEQRES 15 E 249 GLU GLN PRO ALA LEU ASN ASP SER ARG TYR SER LEU SER SEQRES 16 E 249 SER ARG LEU ARG VAL SER ALA THR PHE TRP GLN ASN PRO SEQRES 17 E 249 ARG ASN HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SEQRES 18 E 249 SER GLU ASN ASP GLU TRP THR GLN ASP ARG ALA LYS PRO SEQRES 19 E 249 VAL THR GLN ILE VAL SER ALA GLU ALA TRP GLY ARG ALA SEQRES 20 E 249 ASP CYS MODRES 1YMM ASN A 118 ASN GLYCOSYLATION SITE HET NAG A 192 15 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 6 NAG C8 H15 N O6 HELIX 1 1 LEU A 45 PHE A 51 5 7 HELIX 2 2 ALA A 56 SER A 77 1 22 HELIX 3 3 ASN B 19 GLU B 22 5 4 HELIX 4 4 THR B 51 LEU B 53 5 3 HELIX 5 5 GLY B 54 GLN B 64 1 11 HELIX 6 6 LYS B 65 TYR B 78 1 14 HELIX 7 7 TYR B 78 GLU B 87 1 10 HELIX 8 8 SER B 88 THR B 90 5 3 HELIX 9 9 ASP D 66 LYS D 70 5 5 HELIX 10 10 ASP E 120 VAL E 124 5 5 HELIX 11 11 ALA E 137 THR E 142 1 6 SHEET 1 A 6 VAL A 42 TRP A 43 0 SHEET 2 A 6 ASP A 29 VAL A 34 -1 N HIS A 33 O VAL A 42 SHEET 3 A 6 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 A 6 VAL A 6 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 A 6 LYS B 12 PHE B 18 -1 O ARG B 13 N GLN A 9 SHEET 6 A 6 ARG B 23 ARG B 25 -1 O ARG B 25 N HIS B 16 SHEET 1 B 6 PHE B 7 TRP B 9 0 SHEET 2 B 6 VAL A 6 ASN A 15 -1 N ASN A 15 O PHE B 7 SHEET 3 B 6 LYS B 12 PHE B 18 -1 O ARG B 13 N GLN A 9 SHEET 4 B 6 LEU B 27 TYR B 32 -1 O ARG B 29 N LYS B 12 SHEET 5 B 6 GLU B 35 ASP B 41 -1 O VAL B 38 N TYR B 30 SHEET 6 B 6 ARG B 48 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 C 4 VAL A 91 THR A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 O HIS A 149 N CYS A 107 SHEET 4 C 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 D 4 VAL A 91 THR A 93 0 SHEET 2 D 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 D 4 PHE A 145 PHE A 153 -1 O HIS A 149 N CYS A 107 SHEET 4 D 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 E 4 LYS A 126 VAL A 128 0 SHEET 2 E 4 ASN A 118 ARG A 123 -1 N TRP A 121 O VAL A 128 SHEET 3 E 4 TYR A 161 GLU A 166 -1 O ASP A 162 N LEU A 122 SHEET 4 E 4 LEU A 174 TRP A 178 -1 O LYS A 176 N CYS A 163 SHEET 1 F 4 LYS B 98 TYR B 102 0 SHEET 2 F 4 LEU B 115 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 F 4 PHE B 155 LEU B 161 -1 O LEU B 161 N LEU B 115 SHEET 4 F 4 MET B 142 VAL B 143 -1 N VAL B 143 O MET B 160 SHEET 1 G 4 GLN B 136 GLU B 138 0 SHEET 2 G 4 GLU B 128 LEU B 133 -1 N LEU B 133 O GLN B 136 SHEET 3 G 4 TYR B 171 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 G 4 LEU B 184 TRP B 188 -1 O LEU B 184 N VAL B 175 SHEET 1 H 4 LEU D 48 ARG D 50 0 SHEET 2 H 4 ILE D 29 TYR D 35 -1 N LEU D 32 O ILE D 49 SHEET 3 H 4 PHE D 88 THR D 93 -1 O ALA D 90 N GLN D 33 SHEET 4 H 4 TYR D 100 PHE D 102 -1 O ILE D 101 N THR D 91 SHEET 1 I 2 VAL E 4 GLN E 6 0 SHEET 2 I 2 CYS E 23 SER E 25 -1 O ARG E 24 N SER E 5 SHEET 1 J 2 TRP E 10 ILE E 12 0 SHEET 2 J 2 ARG E 114 THR E 116 1 O THR E 116 N VAL E 11 SHEET 1 K 2 LYS E 20 ILE E 21 0 SHEET 2 K 2 LEU E 79 THR E 80 -1 O LEU E 79 N ILE E 21 SHEET 1 L 4 TYR E 58 GLU E 59 0 SHEET 2 L 4 LEU E 46 ASN E 51 -1 N THR E 49 O TYR E 58 SHEET 3 L 4 THR E 32 GLN E 38 -1 N TRP E 35 O MET E 47 SHEET 4 L 4 PHE E 91 SER E 95 -1 O PHE E 91 N GLN E 38 SHEET 1 M 3 GLU E 128 VAL E 129 0 SHEET 2 M 3 THR E 146 THR E 152 -1 O THR E 152 N GLU E 128 SHEET 3 M 3 SER E 195 ARG E 199 -1 O LEU E 198 N LEU E 147 SHEET 1 N 3 TRP E 163 TRP E 164 0 SHEET 2 N 3 PHE E 212 GLN E 217 -1 O ARG E 213 N TRP E 164 SHEET 3 N 3 ILE E 238 ALA E 243 -1 O ALA E 241 N CYS E 214 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.03 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.02 SSBOND 4 CYS D 23 CYS D 89 1555 1555 2.03 SSBOND 5 CYS E 23 CYS E 94 1555 1555 2.03 SSBOND 6 CYS E 149 CYS E 214 1555 1555 2.03 LINK ND2 ASN A 118 C1 NAG A 192 1555 1555 1.45 CISPEP 1 ASN A 15 PRO A 16 0 -0.42 CISPEP 2 THR A 113 PRO A 114 0 -0.03 CISPEP 3 TYR B 123 PRO B 124 0 -4.88 CISPEP 4 TYR E 155 PRO E 156 0 1.59 CRYST1 137.340 212.620 278.220 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003594 0.00000