PDB Short entry for 1YRY HEADER TRANSFERASE 05-FEB-05 1YRY TITLE CRYSTAL STRUCTURE OF HUMAN PNP COMPLEXED WITH MESG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: INOSINE PHOSPHORYLASE, PNP; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PURINE NUCLEOSIDE PHOSPHORYLASE, DRUG DESIGN, SYNCHROTRON, MESG, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.G.SILVA,J.H.PEREIRA,F.CANDURI,L.A.BASSO,W.F.DE AZEVEDO JR., AUTHOR 2 D.S.SANTOS REVDAT 4 25-OCT-23 1YRY 1 REMARK REVDAT 3 13-JUL-11 1YRY 1 VERSN REVDAT 2 24-FEB-09 1YRY 1 VERSN REVDAT 1 17-JAN-06 1YRY 0 JRNL AUTH R.G.SILVA,J.H.PEREIRA,F.CANDURI,W.F.DE AZEVEDO JR., JRNL AUTH 2 L.A.BASSO,D.S.SANTOS JRNL TITL KINETICS AND CRYSTAL STRUCTURE OF HUMAN PURINE NUCLEOSIDE JRNL TITL 2 PHOSPHORYLASE IN COMPLEX WITH 7-METHYL-6-THIO-GUANOSINE JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 442 49 2005 JRNL REFN ISSN 0003-9861 JRNL PMID 16154528 JRNL DOI 10.1016/J.ABB.2005.07.021 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.F.DE AZEVEDO JR.,F.CANDURI,D.M.DOS SANTOS,R.G.SILVA, REMARK 1 AUTH 2 J.S.DE OLIVEIRA,L.P.DE CARVALHO,L.A.BASSO,M.A.MENDES, REMARK 1 AUTH 3 M.S.PALMA,D.S.SANTOS REMARK 1 TITL CRYSTAL STRUCTURE OF HUMAN PURINE NUCLEOSIDE PHOSPHORYLASE REMARK 1 TITL 2 AT 2.3A RESOLUTION REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 308 545 2003 REMARK 1 REFN ISSN 0006-291X REMARK 1 PMID 12914785 REMARK 1 DOI 10.1016/S0006-291X(03)01431-1 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 2.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1365 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2251 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 7.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.850 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.15 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.590 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4310 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1PWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CITRATE, PH REMARK 280 5.30, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 69.49500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.12296 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.28333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 69.49500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.12296 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.28333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 69.49500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.12296 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.28333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 69.49500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.12296 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.28333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 69.49500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.12296 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.28333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 69.49500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.12296 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.28333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 80.24591 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 106.56667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 80.24591 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 106.56667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 80.24591 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 106.56667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 80.24591 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.56667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 80.24591 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 106.56667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 80.24591 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 106.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 138.99000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 69.49500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 120.36887 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN E 3 169.18 -37.11 REMARK 500 PRO E 54 -67.66 -20.23 REMARK 500 VAL E 61 -52.99 -144.50 REMARK 500 PRO E 62 23.60 -62.60 REMARK 500 ALA E 65 16.29 157.33 REMARK 500 ASN E 74 45.09 38.29 REMARK 500 ASP E 167 111.28 -32.06 REMARK 500 GLN E 184 -68.23 86.76 REMARK 500 ALA E 196 -156.79 -89.17 REMARK 500 THR E 221 -58.70 79.76 REMARK 500 ILE E 241 84.89 -60.62 REMARK 500 ASN E 243 175.67 178.22 REMARK 500 SER E 251 -92.57 -70.67 REMARK 500 LEU E 252 -83.55 70.39 REMARK 500 GLU E 253 131.71 -27.04 REMARK 500 ALA E 255 58.79 -152.01 REMARK 500 GLU E 259 -88.09 167.37 REMARK 500 VAL E 260 13.92 46.50 REMARK 500 LYS E 287 -53.73 79.61 REMARK 500 ALA E 288 54.96 39.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR E 166 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MSG E 290 DBREF 1YRY E 1 289 UNP P00491 PNPH_HUMAN 1 289 SEQRES 1 E 289 MET GLU ASN GLY TYR THR TYR GLU ASP TYR LYS ASN THR SEQRES 2 E 289 ALA GLU TRP LEU LEU SER HIS THR LYS HIS ARG PRO GLN SEQRES 3 E 289 VAL ALA ILE ILE CYS GLY SER GLY LEU GLY GLY LEU THR SEQRES 4 E 289 ASP LYS LEU THR GLN ALA GLN ILE PHE ASP TYR SER GLU SEQRES 5 E 289 ILE PRO ASN PHE PRO ARG SER THR VAL PRO GLY HIS ALA SEQRES 6 E 289 GLY ARG LEU VAL PHE GLY PHE LEU ASN GLY ARG ALA CYS SEQRES 7 E 289 VAL MET MET GLN GLY ARG PHE HIS MET TYR GLU GLY TYR SEQRES 8 E 289 PRO LEU TRP LYS VAL THR PHE PRO VAL ARG VAL PHE HIS SEQRES 9 E 289 LEU LEU GLY VAL ASP THR LEU VAL VAL THR ASN ALA ALA SEQRES 10 E 289 GLY GLY LEU ASN PRO LYS PHE GLU VAL GLY ASP ILE MET SEQRES 11 E 289 LEU ILE ARG ASP HIS ILE ASN LEU PRO GLY PHE SER GLY SEQRES 12 E 289 GLN ASN PRO LEU ARG GLY PRO ASN ASP GLU ARG PHE GLY SEQRES 13 E 289 ASP ARG PHE PRO ALA MET SER ASP ALA TYR ASP ARG THR SEQRES 14 E 289 MET ARG GLN ARG ALA LEU SER THR TRP LYS GLN MET GLY SEQRES 15 E 289 GLU GLN ARG GLU LEU GLN GLU GLY THR TYR VAL MET VAL SEQRES 16 E 289 ALA GLY PRO SER PHE GLU THR VAL ALA GLU CYS ARG VAL SEQRES 17 E 289 LEU GLN LYS LEU GLY ALA ASP ALA VAL GLY MET SER THR SEQRES 18 E 289 VAL PRO GLU VAL ILE VAL ALA ARG HIS CYS GLY LEU ARG SEQRES 19 E 289 VAL PHE GLY PHE SER LEU ILE THR ASN LYS VAL ILE MET SEQRES 20 E 289 ASP TYR GLU SER LEU GLU LYS ALA ASN HIS GLU GLU VAL SEQRES 21 E 289 LEU ALA ALA GLY LYS GLN ALA ALA GLN LYS LEU GLU GLN SEQRES 22 E 289 PHE VAL SER ILE LEU MET ALA SER ILE PRO LEU PRO ASP SEQRES 23 E 289 LYS ALA SER HET SO4 E 291 5 HET SO4 E 292 5 HET SO4 E 293 5 HET MSG E 290 21 HETNAM SO4 SULFATE ION HETNAM MSG 7-METHYL-6-THIO-GUANOSINE FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 MSG C11 H15 N5 O4 S FORMUL 6 HOH *119(H2 O) HELIX 1 1 THR E 6 SER E 19 1 14 HELIX 2 2 LEU E 35 LYS E 41 5 7 HELIX 3 3 SER E 51 ILE E 53 5 3 HELIX 4 4 HIS E 86 GLY E 90 5 5 HELIX 5 5 PRO E 92 THR E 97 1 6 HELIX 6 6 THR E 97 LEU E 106 1 10 HELIX 7 7 LEU E 138 SER E 142 1 5 HELIX 8 8 ASP E 167 MET E 181 1 15 HELIX 9 9 THR E 202 GLY E 213 1 12 HELIX 10 10 THR E 221 CYS E 231 1 11 HELIX 11 11 GLN E 266 LEU E 278 1 13 HELIX 12 12 MET E 279 ILE E 282 5 4 SHEET 1 A10 THR E 43 ASP E 49 0 SHEET 2 A10 ARG E 67 LEU E 73 -1 O PHE E 70 N GLN E 46 SHEET 3 A10 ARG E 76 GLN E 82 -1 O GLN E 82 N ARG E 67 SHEET 4 A10 VAL E 27 CYS E 31 1 N ILE E 29 O MET E 81 SHEET 5 A10 THR E 110 GLY E 119 1 O THR E 114 N ILE E 30 SHEET 6 A10 ARG E 234 LYS E 244 1 O LEU E 240 N ASN E 115 SHEET 7 A10 ILE E 129 ASN E 137 -1 N ILE E 132 O GLY E 237 SHEET 8 A10 GLN E 188 MET E 194 1 O TYR E 192 N ASP E 134 SHEET 9 A10 ALA E 216 GLY E 218 1 O ALA E 216 N VAL E 193 SHEET 10 A10 THR E 110 GLY E 119 -1 N GLY E 118 O VAL E 217 SITE 1 AC1 4 PRO E 92 GLN E 144 ARG E 148 HOH E 399 SITE 1 AC2 5 GLY E 34 LEU E 35 GLY E 36 GLN E 82 SITE 2 AC2 5 HOH E 317 SITE 1 AC3 8 GLY E 32 SER E 33 ARG E 84 HIS E 86 SITE 2 AC3 8 ASN E 115 ALA E 116 SER E 220 MSG E 290 SITE 1 AC4 18 SER E 33 HIS E 86 TYR E 88 ALA E 116 SITE 2 AC4 18 ALA E 117 GLY E 118 PHE E 159 PHE E 200 SITE 3 AC4 18 GLU E 201 VAL E 217 GLY E 218 MET E 219 SITE 4 AC4 18 THR E 242 ASN E 243 VAL E 245 HIS E 257 SITE 5 AC4 18 SO4 E 293 HOH E 370 CRYST1 138.990 138.990 159.850 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007190 0.004150 0.000000 0.00000 SCALE2 0.000000 0.008310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006260 0.00000