PDB Short entry for 1YSA HEADER TRANSCRIPTION/DNA 09-AUG-93 1YSA TITLE THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF TITLE 2 UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE PROTEIN-DNA TITLE 3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*CP*CP*TP*AP*TP*GP*AP*CP*TP*CP*AP*TP*CP*CP*A P*GP*TP*T)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*GP*AP*GP*TP*CP*AP*TP*A P*GP*GP*A)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (GCN4); COMPND 13 CHAIN: C, D SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.E.ELLENBERGER,C.J.BRANDL,K.STRUHL,S.C.HARRISON REVDAT 3 14-FEB-24 1YSA 1 REMARK REVDAT 2 24-FEB-09 1YSA 1 VERSN REVDAT 1 31-OCT-93 1YSA 0 JRNL AUTH T.E.ELLENBERGER,C.J.BRANDL,K.STRUHL,S.C.HARRISON JRNL TITL THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF JRNL TITL 2 UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE JRNL TITL 3 PROTEIN-DNA COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 71 1223 1992 JRNL REFN ISSN 0092-8674 JRNL PMID 1473154 JRNL DOI 10.1016/S0092-8674(05)80070-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.K.O'SHEA,J.D.KLEMM,P.S.KIM,T.ALBER REMARK 1 TITL X-RAY STRUCTURE OF THE GCN4 LEUCINE ZIPPER, A TWO-STRANDED, REMARK 1 TITL 2 PARALLEL COILED COIL REMARK 1 REF SCIENCE V. 254 539 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 5289 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 941 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.023 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 3.300 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YSA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 118.00 REMARK 200 PH : 5.75 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-13 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.75, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295.00K TWO ADENINES, B22 AND B23, WHICH ARE REMARK 280 NEAR THE 5-PRIME END OF DNA CHAIN B ARE LOOPED OUT OF THE DNA REMARK 280 HELIX. THIS CONFORMATION IS PRESENT IN CRYSTALS THAT WERE SOAKED REMARK 280 IN 35% (VOL/VOL) POLYETHYLENE GLYCOL MW 400, FOLLOWED BY RAPID REMARK 280 FREEZING AND X-RAY DATA COLLECTION AT -155 DEG. CENTIGRADE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.56500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 29.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 224 REMARK 465 ARG D 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 1 C5' DT A 1 C4' 0.055 REMARK 500 DT A 1 N1 DT A 1 C2 0.055 REMARK 500 DT A 1 C5 DT A 1 C7 0.055 REMARK 500 DA A 6 C5' DA A 6 C4' 0.046 REMARK 500 DA A 6 N9 DA A 6 C4 -0.040 REMARK 500 DT A 7 N1 DT A 7 C2 -0.060 REMARK 500 DT A 7 C5 DT A 7 C7 0.038 REMARK 500 DG A 8 C5' DG A 8 C4' 0.047 REMARK 500 DG A 8 C8 DG A 8 N9 -0.048 REMARK 500 DA A 9 O3' DA A 9 C3' -0.066 REMARK 500 DC A 10 N1 DC A 10 C6 -0.064 REMARK 500 DT A 11 C5' DT A 11 C4' 0.058 REMARK 500 DT A 14 C5 DT A 14 C7 0.040 REMARK 500 DG A 18 C5' DG A 18 C4' 0.059 REMARK 500 DT A 19 C5 DT A 19 C7 0.036 REMARK 500 DT A 20 P DT A 20 O5' 0.064 REMARK 500 DT A 20 C5' DT A 20 C4' 0.052 REMARK 500 DA B 23 C4' DA B 23 C3' 0.081 REMARK 500 DC B 24 O3' DT B 25 P 0.104 REMARK 500 DT B 25 C5' DT B 25 C4' 0.052 REMARK 500 DT B 25 C5 DT B 25 C6 0.050 REMARK 500 DT B 25 O3' DG B 26 P 0.083 REMARK 500 DG B 26 C5' DG B 26 C4' -0.094 REMARK 500 DG B 27 P DG B 27 O5' 0.066 REMARK 500 DG B 27 C5' DG B 27 C4' 0.051 REMARK 500 DT B 29 O3' DT B 29 C3' -0.050 REMARK 500 DG B 30 O3' DG B 30 C3' -0.037 REMARK 500 DG B 30 O3' DA B 31 P -0.075 REMARK 500 DA B 31 C4 DA B 31 C5 -0.051 REMARK 500 DA B 31 C5 DA B 31 C6 -0.058 REMARK 500 DA B 31 C6 DA B 31 N1 -0.050 REMARK 500 DA B 31 C5 DA B 31 N7 -0.045 REMARK 500 DA B 31 C6 DA B 31 N6 -0.065 REMARK 500 DG B 32 O3' DT B 33 P -0.097 REMARK 500 DA B 35 C5' DA B 35 C4' 0.096 REMARK 500 DA B 35 O3' DT B 36 P 0.078 REMARK 500 DT B 36 O3' DT B 36 C3' -0.039 REMARK 500 DA B 37 N9 DA B 37 C4 -0.047 REMARK 500 DG B 39 P DG B 39 O5' 0.121 REMARK 500 DG B 39 C5' DG B 39 C4' 0.120 REMARK 500 DG B 39 O4' DG B 39 C4' 0.055 REMARK 500 VAL C 278 CA VAL C 278 CB 0.126 REMARK 500 HIS D 266 NE2 HIS D 266 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 1 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT A 1 N3 - C2 - O2 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT A 1 C3' - O3' - P ANGL. DEV. = -11.0 DEGREES REMARK 500 DT A 2 O4' - C1' - C2' ANGL. DEV. = -9.5 DEGREES REMARK 500 DT A 2 O4' - C1' - N1 ANGL. DEV. = -10.2 DEGREES REMARK 500 DT A 2 C4 - C5 - C6 ANGL. DEV. = 4.6 DEGREES REMARK 500 DT A 2 N3 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DT A 2 C6 - C5 - C7 ANGL. DEV. = -5.4 DEGREES REMARK 500 DC A 4 O4' - C4' - C3' ANGL. DEV. = 8.6 DEGREES REMARK 500 DC A 4 C4' - C3' - C2' ANGL. DEV. = -10.4 DEGREES REMARK 500 DC A 4 C3' - C2' - C1' ANGL. DEV. = 8.5 DEGREES REMARK 500 DC A 4 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC A 4 N1 - C2 - O2 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC A 4 C3' - O3' - P ANGL. DEV. = 14.4 DEGREES REMARK 500 DT A 5 O4' - C1' - C2' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT A 5 C4 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT A 5 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 DA A 6 C4' - C3' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT A 7 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DG A 8 O4' - C1' - N9 ANGL. DEV. = 9.1 DEGREES REMARK 500 DG A 8 C4 - C5 - N7 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 8 N9 - C4 - C5 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA A 9 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA A 9 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA A 9 C5 - C6 - N6 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA A 9 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DC A 10 O3' - P - O5' ANGL. DEV. = -22.7 DEGREES REMARK 500 DC A 10 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC A 10 N1 - C2 - O2 ANGL. DEV. = 6.3 DEGREES REMARK 500 DC A 10 N3 - C2 - O2 ANGL. DEV. = -6.4 DEGREES REMARK 500 DC A 10 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 DT A 11 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DT A 11 C1' - O4' - C4' ANGL. DEV. = 5.9 DEGREES REMARK 500 DT A 11 O4' - C1' - C2' ANGL. DEV. = -9.4 DEGREES REMARK 500 DT A 11 N3 - C2 - O2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT A 11 C5 - C4 - O4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT A 11 C6 - C5 - C7 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC A 12 P - O5' - C5' ANGL. DEV. = -9.6 DEGREES REMARK 500 DC A 12 O4' - C4' - C3' ANGL. DEV. = 4.3 DEGREES REMARK 500 DC A 12 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC A 12 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DA A 13 O3' - P - O5' ANGL. DEV. = -12.5 DEGREES REMARK 500 DT A 14 C4' - C3' - C2' ANGL. DEV. = -4.4 DEGREES REMARK 500 DT A 14 C3' - C2' - C1' ANGL. DEV. = 8.6 DEGREES REMARK 500 DT A 14 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC A 15 O4' - C1' - C2' ANGL. DEV. = -11.0 DEGREES REMARK 500 DC A 15 N1 - C2 - O2 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC A 15 N3 - C2 - O2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 160 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 278 -93.20 177.79 REMARK 500 LYS D 225 -154.80 -139.91 REMARK 500 ASP D 226 50.73 -92.16 REMARK 500 VAL D 278 -85.44 -102.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA B 40 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1YSA C 226 281 UNP P03069 GCN4_YEAST 226 281 DBREF 1YSA D 226 281 UNP P03069 GCN4_YEAST 226 281 DBREF 1YSA A 1 20 PDB 1YSA 1YSA 1 20 DBREF 1YSA B 21 40 PDB 1YSA 1YSA 21 40 SEQRES 1 A 20 DT DT DC DC DT DA DT DG DA DC DT DC DA SEQRES 2 A 20 DT DC DC DA DG DT DT SEQRES 1 B 20 DA DA DA DC DT DG DG DA DT DG DA DG DT SEQRES 2 B 20 DC DA DT DA DG DG DA SEQRES 1 C 58 MET LYS ASP PRO ALA ALA LEU LYS ARG ALA ARG ASN THR SEQRES 2 C 58 GLU ALA ALA ARG ARG SER ARG ALA ARG LYS LEU GLN ARG SEQRES 3 C 58 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 4 C 58 LYS ASN TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 5 C 58 LYS LEU VAL GLY GLU ARG SEQRES 1 D 58 MET LYS ASP PRO ALA ALA LEU LYS ARG ALA ARG ASN THR SEQRES 2 D 58 GLU ALA ALA ARG ARG SER ARG ALA ARG LYS LEU GLN ARG SEQRES 3 D 58 MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER SEQRES 4 D 58 LYS ASN TYR HIS LEU GLU ASN GLU VAL ALA ARG LEU LYS SEQRES 5 D 58 LYS LEU VAL GLY GLU ARG FORMUL 5 HOH *17(H2 O) HELIX 1 C1 ALA C 228 GLY C 279 1 52 HELIX 2 D1 ALA D 228 GLY D 279 1 52 CRYST1 49.130 88.540 59.240 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020354 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016880 0.00000