PDB Short entry for 1YTF HEADER TRANSCRIPTION/DNA 05-APR-96 1YTF TITLE YEAST TFIIA/TBP/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*TP*AP*TP*GP*TP*AP*TP*AP*TP*AP*AP*AP*AP*C)- COMPND 3 3'); COMPND 4 CHAIN: E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*TP*TP*TP*TP*AP*TP*AP*TP*AP*CP*AP*TP*AP*CP*A)- COMPND 8 3'); COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (TATA BINDING PROTEIN (TBP)); COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR IIA - TOA1N SUBUNIT); COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR IIA - TOA1C SUBUNIT); COMPND 21 CHAIN: C; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: PROTEIN (TRANSCRIPTION FACTOR IIA - TOA2 SUBUNIT); COMPND 25 CHAIN: D; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 4; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 OTHER_DETAILS: RECONSTITUTED FROM 3 INDIVIDUALLY OVEREXPRESSED SOURCE 18 POLYPEPTIDES; SOURCE 19 MOL_ID: 5; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 21 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 22 ORGANISM_TAXID: 4932; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 6; SOURCE 26 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 27 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 28 ORGANISM_TAXID: 4932; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATION, DNA, COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.TAN,Y.HUNZIKER,D.F.SARGENT,T.J.RICHMOND REVDAT 4 14-FEB-24 1YTF 1 REMARK REVDAT 3 24-FEB-09 1YTF 1 VERSN REVDAT 2 11-MAY-99 1YTF 1 COMPND REVDAT 1 20-JUN-96 1YTF 0 JRNL AUTH S.TAN,Y.HUNZIKER,D.F.SARGENT,T.J.RICHMOND JRNL TITL CRYSTAL STRUCTURE OF A YEAST TFIIA/TBP/DNA COMPLEX. JRNL REF NATURE V. 381 127 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8610010 JRNL DOI 10.1038/381127A0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 20758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2955 REMARK 3 NUCLEIC ACID ATOMS : 650 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.290 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000177434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22476 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 48 REMARK 465 THR B 49 REMARK 465 LYS B 50 REMARK 465 VAL B 51 REMARK 465 THR B 52 REMARK 465 THR B 53 REMARK 465 PHE B 54 REMARK 465 GLY C 208 REMARK 465 SER C 209 REMARK 465 SER C 210 REMARK 465 ALA C 211 REMARK 465 LEU C 212 REMARK 465 LEU C 213 REMARK 465 ASP C 214 REMARK 465 THR C 215 REMARK 465 ASP C 216 REMARK 465 GLU C 217 REMARK 465 VAL C 218 REMARK 465 GLY C 219 REMARK 465 SER C 220 REMARK 465 GLU C 221 REMARK 465 LEU C 222 REMARK 465 ASP C 223 REMARK 465 ASP C 224 REMARK 465 SER C 225 REMARK 465 ASP C 226 REMARK 465 ASP C 227 REMARK 465 ASP C 228 REMARK 465 TYR C 229 REMARK 465 LEU C 230 REMARK 465 ILE C 231 REMARK 465 SER C 232 REMARK 465 GLU C 233 REMARK 465 GLY C 234 REMARK 465 GLU C 235 REMARK 465 GLU C 236 REMARK 465 ASP C 237 REMARK 465 GLY C 238 REMARK 465 PRO C 239 REMARK 465 ASP C 240 REMARK 465 ALA D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 4 REMARK 465 ASP D 89 REMARK 465 SER D 90 REMARK 465 HIS D 91 REMARK 465 ARG D 92 REMARK 465 ASP D 93 REMARK 465 ALA D 94 REMARK 465 SER D 95 REMARK 465 GLN D 96 REMARK 465 ASN D 97 REMARK 465 GLY D 98 REMARK 465 SER D 99 REMARK 465 GLY D 100 REMARK 465 ASP D 101 REMARK 465 SER D 102 REMARK 465 GLN D 103 REMARK 465 LYS D 120 REMARK 465 SER D 121 REMARK 465 GLU D 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 2 C4' - C3' - C2' ANGL. DEV. = 6.0 DEGREES REMARK 500 DG E 2 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DA E 4 C4' - C3' - C2' ANGL. DEV. = 6.1 DEGREES REMARK 500 DT E 5 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 DA E 10 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 DT F 2 C4' - C3' - C2' ANGL. DEV. = 6.2 DEGREES REMARK 500 DA F 12 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO A 200 C - N - CA ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 110 98.80 -61.37 REMARK 500 LYS A 167 37.43 74.84 REMARK 500 LYS A 199 -103.25 -48.21 REMARK 500 LYS A 201 86.14 -62.56 REMARK 500 ILE B 30 -81.81 -80.04 REMARK 500 ASP B 31 127.90 172.01 REMARK 500 ASN C 242 61.96 64.40 REMARK 500 CYS C 246 -166.02 -166.97 REMARK 500 LYS C 255 -131.70 62.51 REMARK 500 ASP C 264 79.98 29.05 REMARK 500 TYR D 6 115.57 61.37 REMARK 500 ARG D 31 24.92 -153.36 REMARK 500 GLU D 33 108.33 -41.52 REMARK 500 SER D 35 -41.30 74.44 REMARK 500 GLN D 57 -36.62 -132.25 REMARK 500 CYS D 72 141.15 -170.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG E 6 0.07 SIDE CHAIN REMARK 500 DA E 13 0.07 SIDE CHAIN REMARK 500 DA E 15 0.08 SIDE CHAIN REMARK 500 DT F 7 0.10 SIDE CHAIN REMARK 500 DA F 12 0.07 SIDE CHAIN REMARK 500 DA F 16 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1YTF A 61 240 UNP P13393 TBP_YEAST 60 239 DBREF 1YTF B 2 54 UNP P32773 TOA1_YEAST 2 54 DBREF 1YTF C 210 286 UNP P32773 TOA1_YEAST 210 286 DBREF 1YTF D 2 122 UNP P32774 TOA2_YEAST 2 122 DBREF 1YTF E 1 16 PDB 1YTF 1YTF 1 16 DBREF 1YTF F 1 16 PDB 1YTF 1YTF 1 16 SEQRES 1 E 16 DT DG DT DA DT DG DT DA DT DA DT DA DA SEQRES 2 E 16 DA DA DC SEQRES 1 F 16 DG DT DT DT DT DA DT DA DT DA DC DA DT SEQRES 2 F 16 DA DC DA SEQRES 1 A 180 SER GLY ILE VAL PRO THR LEU GLN ASN ILE VAL ALA THR SEQRES 2 A 180 VAL THR LEU GLY CYS ARG LEU ASP LEU LYS THR VAL ALA SEQRES 3 A 180 LEU HIS ALA ARG ASN ALA GLU TYR ASN PRO LYS ARG PHE SEQRES 4 A 180 ALA ALA VAL ILE MET ARG ILE ARG GLU PRO LYS THR THR SEQRES 5 A 180 ALA LEU ILE PHE ALA SER GLY LYS MET VAL VAL THR GLY SEQRES 6 A 180 ALA LYS SER GLU ASP ASP SER LYS LEU ALA SER ARG LYS SEQRES 7 A 180 TYR ALA ARG ILE ILE GLN LYS ILE GLY PHE ALA ALA LYS SEQRES 8 A 180 PHE THR ASP PHE LYS ILE GLN ASN ILE VAL GLY SER CYS SEQRES 9 A 180 ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU ALA PHE SEQRES 10 A 180 SER HIS GLY THR PHE SER SER TYR GLU PRO GLU LEU PHE SEQRES 11 A 180 PRO GLY LEU ILE TYR ARG MET VAL LYS PRO LYS ILE VAL SEQRES 12 A 180 LEU LEU ILE PHE VAL SER GLY LYS ILE VAL LEU THR GLY SEQRES 13 A 180 ALA LYS GLN ARG GLU GLU ILE TYR GLN ALA PHE GLU ALA SEQRES 14 A 180 ILE TYR PRO VAL LEU SER GLU PHE ARG LYS MET SEQRES 1 B 53 SER ASN ALA GLU ALA SER ARG VAL TYR GLU ILE ILE VAL SEQRES 2 B 53 GLU SER VAL VAL ASN GLU VAL ARG GLU ASP PHE GLU ASN SEQRES 3 B 53 ALA GLY ILE ASP GLU GLN THR LEU GLN ASP LEU LYS ASN SEQRES 4 B 53 ILE TRP GLN LYS LYS LEU THR GLU THR LYS VAL THR THR SEQRES 5 B 53 PHE SEQRES 1 C 79 GLY SER SER ALA LEU LEU ASP THR ASP GLU VAL GLY SER SEQRES 2 C 79 GLU LEU ASP ASP SER ASP ASP ASP TYR LEU ILE SER GLU SEQRES 3 C 79 GLY GLU GLU ASP GLY PRO ASP GLU ASN LEU MET LEU CYS SEQRES 4 C 79 LEU TYR ASP LYS VAL THR ARG THR LYS ALA ARG TRP LYS SEQRES 5 C 79 CYS SER LEU LYS ASP GLY VAL VAL THR ILE ASN ARG ASN SEQRES 6 C 79 ASP TYR THR PHE GLN LYS ALA GLN VAL GLU ALA GLU TRP SEQRES 7 C 79 VAL SEQRES 1 D 121 ALA VAL PRO GLY TYR TYR GLU LEU TYR ARG ARG SER THR SEQRES 2 D 121 ILE GLY ASN SER LEU VAL ASP ALA LEU ASP THR LEU ILE SEQRES 3 D 121 SER ASP GLY ARG ILE GLU ALA SER LEU ALA MET ARG VAL SEQRES 4 D 121 LEU GLU THR PHE ASP LYS VAL VAL ALA GLU THR LEU LYS SEQRES 5 D 121 ASP ASN THR GLN SER LYS LEU THR VAL LYS GLY ASN LEU SEQRES 6 D 121 ASP THR TYR GLY PHE CYS ASP ASP VAL TRP THR PHE ILE SEQRES 7 D 121 VAL LYS ASN CYS GLN VAL THR VAL GLU ASP SER HIS ARG SEQRES 8 D 121 ASP ALA SER GLN ASN GLY SER GLY ASP SER GLN SER VAL SEQRES 9 D 121 ILE SER VAL ASP LYS LEU ARG ILE VAL ALA CYS ASN SER SEQRES 10 D 121 LYS LYS SER GLU HELIX 1 1 LEU A 82 HIS A 88 1 7 HELIX 2 2 GLU A 129 ILE A 146 1 18 HELIX 3 3 LEU A 172 SER A 178 1 7 HELIX 4 4 ARG A 220 PHE A 237 1 18 HELIX 5 5 ALA B 4 ASN B 27 1 24 HELIX 6 6 GLU B 32 LEU B 46 1 15 HELIX 7 7 LEU D 9 ARG D 12 5 4 HELIX 8 8 THR D 14 SER D 28 1 15 HELIX 9 9 LEU D 36 ASP D 54 1 19 SHEET 1 A11 ALA A 72 THR A 75 0 SHEET 2 A11 LYS A 120 THR A 124 -1 N VAL A 123 O ALA A 72 SHEET 3 A11 THR A 111 ILE A 115 -1 N LEU A 114 O VAL A 122 SHEET 4 A11 VAL A 102 ILE A 106 -1 N ILE A 106 O THR A 111 SHEET 5 A11 ALA A 92 TYR A 94 -1 N GLU A 93 O ILE A 103 SHEET 6 A11 ASN D 65 CYS D 72 1 N PHE D 71 O ALA A 92 SHEET 7 A11 VAL D 75 LYS D 81 -1 N LYS D 81 O ASN D 65 SHEET 8 A11 LYS D 110 ASN D 117 -1 N ALA D 115 O TRP D 76 SHEET 9 A11 LEU C 243 TYR C 248 1 N MET C 244 O ARG D 112 SHEET 10 A11 GLY C 265 ILE C 269 -1 N THR C 268 O LEU C 243 SHEET 11 A11 ASN C 272 PHE C 276 -1 N PHE C 276 O GLY C 265 SHEET 1 B 5 LEU A 193 MET A 197 0 SHEET 2 B 5 ILE A 202 ILE A 206 -1 N ILE A 206 O LEU A 193 SHEET 3 B 5 LYS A 211 THR A 215 -1 N THR A 215 O VAL A 203 SHEET 4 B 5 ASN A 159 ASP A 165 -1 N CYS A 164 O ILE A 212 SHEET 5 B 5 THR A 66 VAL A 71 -1 N VAL A 71 O ASN A 159 SHEET 1 C 6 VAL D 105 VAL D 108 0 SHEET 2 C 6 CYS D 83 VAL D 87 -1 N VAL D 85 O ILE D 106 SHEET 3 C 6 LYS D 59 ASN D 65 -1 N LYS D 63 O GLN D 84 SHEET 4 C 6 LYS C 278 GLU C 284 1 N LYS C 278 O LEU D 60 SHEET 5 C 6 ARG C 257 LYS C 263 -1 N LEU C 262 O ALA C 279 SHEET 6 C 6 LEU C 247 THR C 254 -1 N THR C 254 O ARG C 257 CISPEP 1 GLU A 108 PRO A 109 0 -0.45 CRYST1 59.150 93.050 117.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008487 0.00000