PDB Short entry for 1YUC HEADER TRANSCRIPTION REGULATION 13-FEB-05 1YUC TITLE HUMAN NUCLEAR RECEPTOR LIVER RECEPTOR HOMOLOGUE-1, LRH-1, BOUND TO TITLE 2 PHOSPHOLIPID AND A FRAGMENT OF HUMAN SHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORPHAN NUCLEAR RECEPTOR NR5A2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: ALPHA-1-FETOPROTEIN TRANSCRIPTION FACTOR; HEPATOCYTIC COMPND 6 TRANSCRIPTION FACTOR; B1-BINDING FACTOR; HB1F; CYP7A PROMOTER BINDING COMPND 7 FACTOR; LIVER RECEPTOR HOMOLOGUE 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NUCLEAR RECEPTOR 0B2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: NR BOX1; COMPND 13 SYNONYM: ORPHAN NUCLEAR RECEPTOR SHP; SMALL HETERODIMER PARTNER; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR5A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALCH10T; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SEQUENCE OCCURS NATUARLLY IN HOMO SAPIENS KEYWDS LIVER RECEPTOR HOMOLOGUE 1; NUCLEAR RECEPTOR LIGAND BINDING DOMAIN; KEYWDS 2 LRH-1; PHOSPHOLIPID; SHP; SMALL HETERODIMER PARTNER, TRANSCRIPTION KEYWDS 3 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR E.A.ORTLUND,L.YOONKWANG,I.H.SOLOMON,J.M.HAGER,R.SAFI,Y.CHOI,Z.GUAN, AUTHOR 2 A.TRIPATHY,C.R.H.RAETZ,D.P.MCDONNELL,D.D.MOORE,M.R.REDINBO REVDAT 6 14-FEB-24 1YUC 1 REMARK SEQADV REVDAT 5 31-JAN-18 1YUC 1 REMARK REVDAT 4 13-JUL-11 1YUC 1 VERSN REVDAT 3 24-FEB-09 1YUC 1 VERSN REVDAT 2 03-MAY-05 1YUC 1 JRNL REVDAT 1 01-MAR-05 1YUC 0 JRNL AUTH E.A.ORTLUND,Y.LEE,I.H.SOLOMON,J.M.HAGER,R.SAFI,Y.CHOI, JRNL AUTH 2 Z.GUAN,A.TRIPATHY,C.R.H.RAETZ,D.P.MCDONNELL,D.D.MOORE, JRNL AUTH 3 M.R.REDINBO JRNL TITL MODULATION OF HUMAN NUCLEAR RECEPTOR LRH-1 ACTIVITY BY JRNL TITL 2 PHOSPHOLIPIDS AND SHP JRNL REF NAT.STRUCT.MOL.BIOL. V. 12 357 2005 JRNL REFN ISSN 1545-9993 JRNL PMID 15723037 JRNL DOI 10.1038/NSMB910 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 236131.390 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 41458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2082 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6166 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 332 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.92000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 5.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.81000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 45.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PAR REMARK 3 PARAMETER FILE 5 : PTY.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PTY.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : GOL.PAR REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YUC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000031930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9.5%-15% PEG 3350, 5% GLYCEROL, AND 50 REMARK 280 MM BIS-TRIS, PH 6.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.82000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -63.67000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -59.64000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 287 REMARK 465 GLU A 288 REMARK 465 PHE A 289 REMARK 465 MET A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 TYR A 293 REMARK 465 GLN A 294 REMARK 465 THR A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 PRO A 298 REMARK 465 LYS A 539 REMARK 465 ARG A 540 REMARK 465 ALA A 541 REMARK 465 GLY B 287 REMARK 465 GLU B 288 REMARK 465 PHE B 289 REMARK 465 MET B 290 REMARK 465 ASP B 291 REMARK 465 SER B 292 REMARK 465 TYR B 293 REMARK 465 GLN B 294 REMARK 465 THR B 295 REMARK 465 SER B 296 REMARK 465 SER B 297 REMARK 465 PRO B 298 REMARK 465 ALA B 299 REMARK 465 ARG B 540 REMARK 465 ALA B 541 REMARK 465 ALA D 15 REMARK 465 SER D 16 REMARK 465 SER D 28 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 336 O REMARK 480 THR A 423 C O REMARK 480 HIS A 430 C O REMARK 480 LEU A 459 C O REMARK 480 GLU A 515 O REMARK 480 LEU A 522 O REMARK 480 HIS B 336 O REMARK 480 THR B 423 C O REMARK 480 HIS B 430 C O REMARK 480 LEU B 459 C O REMARK 480 GLU B 515 O REMARK 480 LEU B 522 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 365 -61.56 79.58 REMARK 500 ASN A 466 72.51 -106.80 REMARK 500 TYR A 528 -165.32 -109.64 REMARK 500 GLU B 337 23.91 -142.05 REMARK 500 ASN B 466 69.23 -107.49 REMARK 500 TYR B 528 -166.13 -118.29 REMARK 500 SER C 16 36.99 -71.89 REMARK 500 PRO D 18 99.93 -48.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPH A 1001 REMARK 610 EPH B 1002 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 EPH A 1001 REMARK 615 EPH B 1002 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 5002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 5003 DBREF 1YUC A 290 541 UNP O00482 NR5A2_HUMAN 290 541 DBREF 1YUC B 290 541 UNP O00482 NR5A2_HUMAN 290 541 DBREF 1YUC C 15 28 UNP Q15466 SHP_HUMAN 15 28 DBREF 1YUC D 15 28 UNP Q15466 SHP_HUMAN 15 28 SEQADV 1YUC GLY A 287 UNP O00482 CLONING ARTIFACT SEQADV 1YUC GLU A 288 UNP O00482 CLONING ARTIFACT SEQADV 1YUC PHE A 289 UNP O00482 CLONING ARTIFACT SEQADV 1YUC GLY B 287 UNP O00482 CLONING ARTIFACT SEQADV 1YUC GLU B 288 UNP O00482 CLONING ARTIFACT SEQADV 1YUC PHE B 289 UNP O00482 CLONING ARTIFACT SEQRES 1 A 255 GLY GLU PHE MET ASP SER TYR GLN THR SER SER PRO ALA SEQRES 2 A 255 SER ILE PRO HIS LEU ILE LEU GLU LEU LEU LYS CYS GLU SEQRES 3 A 255 PRO ASP GLU PRO GLN VAL GLN ALA LYS ILE MET ALA TYR SEQRES 4 A 255 LEU GLN GLN GLU GLN ALA ASN ARG SER LYS HIS GLU LYS SEQRES 5 A 255 LEU SER THR PHE GLY LEU MET CYS LYS MET ALA ASP GLN SEQRES 6 A 255 THR LEU PHE SER ILE VAL GLU TRP ALA ARG SER SER ILE SEQRES 7 A 255 PHE PHE ARG GLU LEU LYS VAL ASP ASP GLN MET LYS LEU SEQRES 8 A 255 LEU GLN ASN CYS TRP SER GLU LEU LEU ILE LEU ASP HIS SEQRES 9 A 255 ILE TYR ARG GLN VAL VAL HIS GLY LYS GLU GLY SER ILE SEQRES 10 A 255 PHE LEU VAL THR GLY GLN GLN VAL ASP TYR SER ILE ILE SEQRES 11 A 255 ALA SER GLN ALA GLY ALA THR LEU ASN ASN LEU MET SER SEQRES 12 A 255 HIS ALA GLN GLU LEU VAL ALA LYS LEU ARG SER LEU GLN SEQRES 13 A 255 PHE ASP GLN ARG GLU PHE VAL CYS LEU LYS PHE LEU VAL SEQRES 14 A 255 LEU PHE SER LEU ASP VAL LYS ASN LEU GLU ASN PHE GLN SEQRES 15 A 255 LEU VAL GLU GLY VAL GLN GLU GLN VAL ASN ALA ALA LEU SEQRES 16 A 255 LEU ASP TYR THR MET CYS ASN TYR PRO GLN GLN THR GLU SEQRES 17 A 255 LYS PHE GLY GLN LEU LEU LEU ARG LEU PRO GLU ILE ARG SEQRES 18 A 255 ALA ILE SER MET GLN ALA GLU GLU TYR LEU TYR TYR LYS SEQRES 19 A 255 HIS LEU ASN GLY ASP VAL PRO TYR ASN ASN LEU LEU ILE SEQRES 20 A 255 GLU MET LEU HIS ALA LYS ARG ALA SEQRES 1 B 255 GLY GLU PHE MET ASP SER TYR GLN THR SER SER PRO ALA SEQRES 2 B 255 SER ILE PRO HIS LEU ILE LEU GLU LEU LEU LYS CYS GLU SEQRES 3 B 255 PRO ASP GLU PRO GLN VAL GLN ALA LYS ILE MET ALA TYR SEQRES 4 B 255 LEU GLN GLN GLU GLN ALA ASN ARG SER LYS HIS GLU LYS SEQRES 5 B 255 LEU SER THR PHE GLY LEU MET CYS LYS MET ALA ASP GLN SEQRES 6 B 255 THR LEU PHE SER ILE VAL GLU TRP ALA ARG SER SER ILE SEQRES 7 B 255 PHE PHE ARG GLU LEU LYS VAL ASP ASP GLN MET LYS LEU SEQRES 8 B 255 LEU GLN ASN CYS TRP SER GLU LEU LEU ILE LEU ASP HIS SEQRES 9 B 255 ILE TYR ARG GLN VAL VAL HIS GLY LYS GLU GLY SER ILE SEQRES 10 B 255 PHE LEU VAL THR GLY GLN GLN VAL ASP TYR SER ILE ILE SEQRES 11 B 255 ALA SER GLN ALA GLY ALA THR LEU ASN ASN LEU MET SER SEQRES 12 B 255 HIS ALA GLN GLU LEU VAL ALA LYS LEU ARG SER LEU GLN SEQRES 13 B 255 PHE ASP GLN ARG GLU PHE VAL CYS LEU LYS PHE LEU VAL SEQRES 14 B 255 LEU PHE SER LEU ASP VAL LYS ASN LEU GLU ASN PHE GLN SEQRES 15 B 255 LEU VAL GLU GLY VAL GLN GLU GLN VAL ASN ALA ALA LEU SEQRES 16 B 255 LEU ASP TYR THR MET CYS ASN TYR PRO GLN GLN THR GLU SEQRES 17 B 255 LYS PHE GLY GLN LEU LEU LEU ARG LEU PRO GLU ILE ARG SEQRES 18 B 255 ALA ILE SER MET GLN ALA GLU GLU TYR LEU TYR TYR LYS SEQRES 19 B 255 HIS LEU ASN GLY ASP VAL PRO TYR ASN ASN LEU LEU ILE SEQRES 20 B 255 GLU MET LEU HIS ALA LYS ARG ALA SEQRES 1 C 14 ALA SER ARG PRO ALA ILE LEU TYR ALA LEU LEU SER SER SEQRES 2 C 14 SER SEQRES 1 D 14 ALA SER ARG PRO ALA ILE LEU TYR ALA LEU LEU SER SER SEQRES 2 D 14 SER HET EPH A1001 47 HET GOL A5001 6 HET EPH B1002 47 HET GOL B5002 6 HET GOL B5003 6 HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 EPH 2(C39 H68 N O8 P) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 10 HOH *245(H2 O) HELIX 1 1 PRO A 302 LYS A 310 1 9 HELIX 2 2 ASP A 314 ARG A 333 1 20 HELIX 3 3 SER A 340 SER A 363 1 24 HELIX 4 4 PHE A 365 LEU A 369 5 5 HELIX 5 5 LYS A 370 HIS A 397 1 28 HELIX 6 6 TYR A 413 ALA A 420 1 8 HELIX 7 7 GLY A 421 GLN A 442 1 22 HELIX 8 8 ASP A 444 PHE A 457 1 14 HELIX 9 9 ASN A 466 TYR A 489 1 24 HELIX 10 10 GLU A 494 LEU A 501 1 8 HELIX 11 11 LEU A 501 ASN A 523 1 23 HELIX 12 12 ASN A 530 ALA A 538 1 9 HELIX 13 13 PRO B 302 LYS B 310 1 9 HELIX 14 14 ASP B 314 ASN B 332 1 19 HELIX 15 15 SER B 340 SER B 362 1 23 HELIX 16 16 SER B 363 GLU B 368 1 6 HELIX 17 17 LYS B 370 HIS B 397 1 28 HELIX 18 18 TYR B 413 ALA B 420 1 8 HELIX 19 19 GLY B 421 LEU B 441 1 21 HELIX 20 20 ASP B 444 PHE B 457 1 14 HELIX 21 21 ASN B 466 TYR B 489 1 24 HELIX 22 22 GLU B 494 LEU B 501 1 8 HELIX 23 23 ARG B 502 ASN B 523 1 22 HELIX 24 24 ASN B 530 HIS B 537 1 8 HELIX 25 25 PRO C 18 SER C 27 1 10 HELIX 26 26 PRO D 18 SER D 27 1 10 SHEET 1 A 2 SER A 402 PHE A 404 0 SHEET 2 A 2 GLN A 410 ASP A 412 -1 O VAL A 411 N ILE A 403 SHEET 1 B 2 SER B 402 PHE B 404 0 SHEET 2 B 2 GLN B 410 ASP B 412 -1 O VAL B 411 N ILE B 403 SITE 1 AC1 3 GLU A 494 GLY A 497 HOH B 41 SITE 1 AC2 5 GLN A 498 ARG A 502 HOH B 212 LEU B 482 SITE 2 AC2 5 ASP B 483 SITE 1 AC3 7 HOH A 142 HOH B 8 HOH B 34 GLU B 384 SITE 2 AC3 7 SER B 458 ASP B 460 LEU B 503 CRYST1 63.670 59.640 73.240 90.00 100.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015706 0.000000 0.002965 0.00000 SCALE2 0.000000 0.016767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013895 0.00000